SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05520 | AT | Annotation by Michelle Graham. TAIR10: Outer membrane OMP85 family protein | chr5:1632912-1635104 FORWARD LENGTH=524 | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2602 | KOG | Predicted cell surface protein homologous to bacterial outer membrane proteins | JGI | ISS | |
| PTHR12815 | Panther | SORTING AND ASSEMBLY MACHINERY (SAM50) PROTEIN | JGI | ISS | |
| PF01103 | PFAM | Surface antigen | JGI | ISS | |
| PF07244 | PFAM | Surface antigen variable number repeat | JGI | ISS | |
| UniRef100_G7JBW9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sorting and assembly machinery component-like protein n=1 Tax=Medicago truncatula RepID=G7JBW9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M7R6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7R6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g06250 not represented in the dataset |
Glyma14g06250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g43160 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g057500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g06250.1 sequence type=CDS gene model=Glyma14g06250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAAACACCGAAGAAGAAGAAGCAACTCCTCCGAACCCTAAGAATTACACTCAACACTCCACCAACGACGATGTGGAACCTCGTGACGACGAAGACATCGAAGAAGACCAAGAAAACGATGAAGACGACGTCGTTCAGGAACCGAATCGCGGAATTCCCCAATCTGCAGCGTCCAAGTTGCGGGAACAGCGTTTCAAGGTGGAAACCCTATCGCGGCGCTTGTCGTCGGAGCTGGTTCCGATCCGAGTCCACGACGTGGTCATAAACGGCAACACGAAGACGAAGGATTGGGTGATTGAAGCGGAGCTGAAAGGCATCGAGAACGCCACCAGCATGCAGGAGCTTATGCAAGCTTCGCAAATCGCCATTGCCAAGCTTCAGGGTCTCGAAATCTTCGATTCCTGCATGGTTCGCCTCGAGGCTGGACCACGAGAGCTTCCAAACACTGCCAATGTCATCGTCGACGTTGTCGAAACCGATAACAAAGTTTCCGGCGAATTCGGCATTTATACCAAACCCTCGACTAGTTCGTGGACTGCTGAAGGTGCTCTTAAGTATAAGAACTTGTTGGGTTATGGTGATCTATGTGATGCTTCTTTGGCCTATGGTGCCAACCAAGCGACTGAGGTGAGTGTAGGGGTGTATGCCCCTCGAGTTAAAGGATTTTTGACTCCTATTGTAACACGGATATCCATGCTTTCCCAAGATTGGCAGGAGTCTTCCTCATATAAGGAGCGGTTGTTGGGTGCGTATCTTGGCTTAATCTCGACAAAGCACCATGACTTAGCATACACCCTTGGATGGCGTACCTTAACAGATCCGTCAAAGAAATCATCCAGGTCTATAAGGAGGCAGCTTGGGCATGGTTTAGTGTCATCTTTGAAGTATACATTTAAAATTGATAGGAGAAATTCTACTATTAGGCCAACAAAAGGATATGTTTTTCTTTCCACCACTCATGTTGGTGGCCTTACACTGGACCCCAGGAGCTTGCGGTTTCTGCGTCAGGAGTTTGATGTTCGCTTTTCTGTCCCTTTTGGGTTTTACAATACTGCACTAAACCTTGGGATATCTGCTGGTGCTGTTTTTCCATGGGGGAATGGATTCAAAACCAAGCCATCTCCCCTTCCAGAAAGGTTTTATTTGGGTGGTGATTTTTCTCCAGTTTGCACCCTAGGAGGACCAACAACATTATGGGGATTTAAAACTAGAGGATTAGGTCCTACTGAACCTCGGAGGCAAAATAGAGATGGGTCTAATGATGACAATGTTGATTCCTCTGGATGGGACTTCATTGGTGGTGATTTTGCTGTTACTGCTTTTGCAGATCTCTCTTTTGATCTTCCAATTATGTGGTTGAGAGAACATGGAATCCACGGACATGTTTTTGCAGGTTCTGGGAATGCTGCTAAATTAACTAAGAATGAATATAAGCACTTCTCTCCTCGGAAGTTCTTAGAATCCTTTCGAATGTCAGTAGGATGTGGAGTAGTTATTCCTACTAGACTCTTCCGCTTAGAGGGTAACTACTTTTACATACTCAGAAAGGGTGAGCATGATCGTGGGAAGACTGGGTTTAGGTTTAGCTTCTCAGCGCCTTCATAG
>Glyma14g06250.1 sequence type=predicted peptide gene model=Glyma14g06250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTNTEEEEATPPNPKNYTQHSTNDDVEPRDDEDIEEDQENDEDDVVQEPNRGIPQSAASKLREQRFKVETLSRRLSSELVPIRVHDVVINGNTKTKDWVIEAELKGIENATSMQELMQASQIAIAKLQGLEIFDSCMVRLEAGPRELPNTANVIVDVVETDNKVSGEFGIYTKPSTSSWTAEGALKYKNLLGYGDLCDASLAYGANQATEVSVGVYAPRVKGFLTPIVTRISMLSQDWQESSSYKERLLGAYLGLISTKHHDLAYTLGWRTLTDPSKKSSRSIRRQLGHGLVSSLKYTFKIDRRNSTIRPTKGYVFLSTTHVGGLTLDPRSLRFLRQEFDVRFSVPFGFYNTALNLGISAGAVFPWGNGFKTKPSPLPERFYLGGDFSPVCTLGGPTTLWGFKTRGLGPTEPRRQNRDGSNDDNVDSSGWDFIGGDFAVTAFADLSFDLPIMWLREHGIHGHVFAGSGNAAKLTKNEYKHFSPRKFLESFRMSVGCGVVIPTRLFRLEGNYFYILRKGEHDRGKTGFRFSFSAPS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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