SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05490 | AT | Annotation by Michelle Graham. TAIR10: Rad21/Rec8-like family protein | chr5:1624712-1629144 FORWARD LENGTH=617 | SoyBase | E_val: 6.00E-156 | ISS |
| GO:0006302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair | SoyBase | N/A | ISS |
| GO:0006312 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic recombination | SoyBase | N/A | ISS |
| GO:0006325 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin organization | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0010032 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome condensation | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0051455 | GO-bp | Annotation by Michelle Graham. GO Biological Process: attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation | SoyBase | N/A | ISS |
| GO:0051754 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic sister chromatid cohesion, centromeric | SoyBase | N/A | ISS |
| GO:0000228 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromosome | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005694 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromosome | SoyBase | N/A | ISS |
| GO:0008278 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cohesin complex | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1213 | KOG | Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 | JGI | ISS | |
| PTHR12585 | Panther | SCC1 / RAD21 FAMILY MEMBER | JGI | ISS | |
| PTHR12585:SF5 | Panther | COHESIN SUBUNIT RAD21 | JGI | ISS | |
| PF04824 | PFAM | Conserved region of Rad21 / Rec8 like protein | JGI | ISS | |
| PF04825 | PFAM | N terminus of Rad21 / Rec8 like protein | JGI | ISS | |
| UniRef100_G7K279 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Double-strand-break repair protein rad21-like protein n=1 Tax=Medicago truncatula RepID=G7K279_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337B51 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337B51 related cluster n=1 Tax=unknown RepID=UPI0002337B51 | SoyBase | E_val: 0 | ISS |
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Glyma14g06210 not represented in the dataset |
Glyma14g06210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g43130 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g057200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g06210.2 sequence type=CDS gene model=Glyma14g06210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTTACTCTCACCAGCTTCTTGCTCGAAAGGCACCACTCGGTCAAATATGGATGGCTGCGACAATGCACGCAAAGATTAACCGAAGAAAGCTAGACAAGCTCAACATCATCAAAATTTGCGAAGAGATTCTAAACCCATCGATTCCTATGGCTCTTAGACTTTCTGGAATTCTGATGGGAGGAGTAGTGATTGTCTATGAGAGAAAAGTGAAGCTCCTTTATGAGGACGTGACCCGTTTTCTGGTTGAGATAAACGAAGCCTGGAAAGTAAAGACTGCTCCAGATCCTACATTGCTCCCCAAGTCCAAATCCAAGGCCAAAAAAGAGGCTGTTACTCTGCCAGGGACCGGTGAAACGAACATGGAAGATATTGAACAGTCCCTTCAGTTTTCCAACACAGGCACCACAACAGGATTCCAACATAACGCCTATTTTACTATGCGACTTGATAATGTGGATGAACCCTTCACTAATAATGGAGCAAGAGAGGACCAAGATCAATCAGAACTTCTCCATCAAGTTGACGCAGAGAATATTACCTTATTTGAACGCTTTGAAACGTTCCAAGCTAACACGGATACATACAATCGCTTTGAGAGGTTTGATATTGAAGAAGATGAGGAAACACAGGTAAATGTAACTTCAGGAGATCAAATTCTAACCACGCTTGTACCCTCCCCACCTCATCAAGACGAACCCACCAAAGCTGATACGTTTCAAGACCATCATCCTGGACACCCAGACATTCAGCAACCTAGTGAAGGCATGATACCTAGACAGGAACCTAGAAGGCGAGGACCAAATAAAAGGAAAAGAGGACAACCATCGGCTATTGAAATGGATTATGAGCAAACCATTATTCCTGCTCACATATATCAACACTGGCTTCAGAATGCTTCTGACATTGTCTCGCGAAGGGGAAGAAGGAAAAAGCAAAATGATGTTATGTCTTCAACAAAGATAGCCAGCCTCATGAAGCTGCCACCCGTTGTACAAATTGATGATTTATTTACTGCTGTAAATGACAATATATATTATCCAAAACCTATTCTTGACTTATGGATTAAGAGCATTCAACCACCTCATGATTCACCTTCAGAAAGGATTTCAGCCCACCATCCTCCAGAACCATCATTTTCATCGCCTCCAGGAGTACAAAATGAATATTTCATGCAATTTCCTTCTGAAGATTTTGACGGTAGGCCAGACTACCAGGCACCTCCAATGGAGAAGGCTCGGGAACATATCCTCATGGATGAACTGACAGCTAGCCTTTTGAGAGGGCATGAAGCTACTCCTCAGGTCTCATCTGGGAAAGCTGGAGGCAGTGTACATTCCTTTCCAAGACCGACGTCTGAAAATGGTCCTGCCTCACATTCAGATTTTGATTCGGGAAGATTCAAAAATAAAAGGTATTCATCATCTGCAAACAGCAGTGGAGGCCTTGAGCCACTAGCTGAAGATGTAAATTTCAAGTTAGCTAGACTGTATGAAGATGGTCCCACACCTGATCAAGAACTCCTCGTGGAAACAGGACCCACTCAAACACAAGTAAACATCAATCATCCTAGTGACAAGATAACCGATTCCATCCAAGCGCAGATGAAGGCACATTTTGACACGCCTGGAGCTCCTCCAGTGGAATCCCTTCATATCCTAGCTGCTGGAATGACACGGACATCAGCAGCACAACTTTTCTATCAAATTTGTGTTCTTGCTTCCCGCGATGCGTTGAAGGTTGACCAAAAGGTGCCCTACGGAGAGATTCTCTTCTCTAGAGGATTAAGAATGTGA
>Glyma14g06210.2 sequence type=predicted peptide gene model=Glyma14g06210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFYSHQLLARKAPLGQIWMAATMHAKINRRKLDKLNIIKICEEILNPSIPMALRLSGILMGGVVIVYERKVKLLYEDVTRFLVEINEAWKVKTAPDPTLLPKSKSKAKKEAVTLPGTGETNMEDIEQSLQFSNTGTTTGFQHNAYFTMRLDNVDEPFTNNGAREDQDQSELLHQVDAENITLFERFETFQANTDTYNRFERFDIEEDEETQVNVTSGDQILTTLVPSPPHQDEPTKADTFQDHHPGHPDIQQPSEGMIPRQEPRRRGPNKRKRGQPSAIEMDYEQTIIPAHIYQHWLQNASDIVSRRGRRKKQNDVMSSTKIASLMKLPPVVQIDDLFTAVNDNIYYPKPILDLWIKSIQPPHDSPSERISAHHPPEPSFSSPPGVQNEYFMQFPSEDFDGRPDYQAPPMEKAREHILMDELTASLLRGHEATPQVSSGKAGGSVHSFPRPTSENGPASHSDFDSGRFKNKRYSSSANSSGGLEPLAEDVNFKLARLYEDGPTPDQELLVETGPTQTQVNINHPSDKITDSIQAQMKAHFDTPGAPPVESLHILAAGMTRTSAAQLFYQICVLASRDALKVDQKVPYGEILFSRGLRM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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