SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G07090 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal protein S4 (RPS4A) family protein | chr5:2202410-2203805 FORWARD LENGTH=262 | SoyBase | E_val: 0 | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
| GO:0022627 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0378 | KOG | 40S ribosomal protein S4 | JGI | ISS | |
| PTHR11581 | Panther | 30S/40S RIBOSOMAL PROTEIN S4 | JGI | ISS | |
| PF00467 | PFAM | KOW motif | JGI | ISS | |
| PF00900 | PFAM | Ribosomal family S4e | JGI | ISS | |
| PF01479 | PFAM | S4 domain | JGI | ISS | |
| PF08071 | PFAM | RS4NT (NUC023) domain | JGI | ISS | |
| UniRef100_Q8LJW0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal S4 protein n=2 Tax=Glycine max RepID=Q8LJW0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00019AA891 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00019AA891 related cluster n=1 Tax=unknown RepID=UPI00019AA891 | SoyBase | E_val: 0 | ISS |
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Glyma14g06170 not represented in the dataset |
Glyma14g06170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g43080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g056900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g06170.1 sequence type=CDS gene model=Glyma14g06170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTGCGCCTAAACCCTCATCTGGACCACACAAATCGAGGGAGTGCCTCCCCCTCATTCTTATTCTGCGAAACCGGCTGAAGTATGCTCTGACATACCGTGAAGTCATTGCTATTCTGATGCAGCGCCATGTTCTTGTTGATGGCAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGATGTTGTTTCAATCCCAAAAACAAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTTCATTCCATCAGGGATGATGAGGCAAAGTTCAAGCTCTGCAAGGTTAGGTCAGTACAGTTTGGCCAGAAAGGTATCCCATACCTGAACACCTATGATGGTCGCACCATCCGTTACCCAGACCCTCTCATCAGGGCCAATGACACTGTTAAGCTGGATCTGGAGGAAAACAAGATTGTCGATTTTATCAAATTTGATGTTGGGAATGTAGTTATGGTAACAGGTGGAAGAAACAGGGGGCGTGTTGGAGTGATCAAGAACAGGGAGAAGCATAAGGGTAGCTTCGAGACAATTCACGTGCAGGATGCCACTGGGCATGAATTTGCTACTCGTATGGGCAATGTGTTCACTATTGGCAAGGGGACAAAGCCATGGATATCCCTGCCCAAGGGTAAGGGTATTAAGCTATCAATCATTGAAGAAGCTAGGAAAAGGATTGCCGCCCAGCAAGCAACTACTGCTTAA
>Glyma14g06170.1 sequence type=predicted peptide gene model=Glyma14g06170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTVKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKRIAAQQATTA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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