SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20420 | AT | Annotation by Michelle Graham. TAIR10: chromatin remodeling 42 | chr5:6899015-6903266 REVERSE LENGTH=1261 | SoyBase | E_val: 0 | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0390 | KOG | DNA repair protein, SNF2 family | JGI | ISS | |
| PTHR10799 | Panther | ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED | JGI | ISS | |
| PTHR10799:SF41 | Panther | gb def: hypothetical protein c16a3.1c [caenorhabditis elegans] | JGI | ISS | |
| PF00176 | PFAM | SNF2 family N-terminal domain | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| UniRef100_G7K775 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA repair and recombination protein RAD54-like protein n=1 Tax=Medicago truncatula RepID=G7K775_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M7Q5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7Q5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g06090 not represented in the dataset |
Glyma14g06090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g42980 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.U027200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g06090.1 sequence type=CDS gene model=Glyma14g06090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACACAGAAAAAGGCGTTTAGATCAACTCAAGCATCCATTCAGTCCTCACCCCTTTGAAGCAGTTGCATTTGGCTCATGGCAAGCCGTGGAGTTCATAAAAATTGAGGGAGGAACTATGTCCATGCATTTTGTAGATAATCATCATATGGTTATGGAGAAAGGACCCTTGTCAGATATACGGATAAGGTCAAGGAATGCTACTTTATCAGATTGCTCCCGTTTTCTACGTCCTGGAATTGATGTATGTGTGCTATCTGCCCCTCAACAATCTGATGATGCAGATGCAATTAATATCGACCCTGTTTGGGCTGATGCCAAAATAAGCTCTGTACAGAGAAAACCTCATGACTCTGAGTGCTCGTGTCAGTTTTATGTCAACTTTTATGTTCATCAAGGTTCACTCGGTGCAGAGCTAAGAACTCTCAGTAGGGAGATCAAAGTGGTTGGAATCAATCAAATATCCATCCTCCAAAAACTTGAAAGTACTCCTTGTGAAAATCAGCACTACCGGTGGGCATCATCTGAGGACTGTTCCATTATATCACACACTAAATTGCTTCTGGGAAAAGTGTTATGTGATCTTTCATGGTTAGTTGTTACCACAGCTTTAAAGAAGGTTTCAATCTGCGTAAGATCTCTACAAGACAAGCTAGTGTATCAAGTTTTGGGAAGGGATACTGTTAGCACTTCATTGAACAATGAATCTCACATTGATGTTGTGAATTTCAAAACAGACAAAGGCATGTTAGTACCCATTGTTTCTCAAGTAGCTACACTTAAAACCAAGAGGGTTGATCCTGAACAGGAATCCCATGAAGATAAAGAATCACCATCTTACAATGTCGAAGGCTTAAGGCGTTCCAAACGTCGGAATGTACAACCTGAGCGTTACCTTGGTTGTGAAAAAGTTTCCCAGATTGATGTTGGTTCTTTTAGAAACTTACCACCAGTTAAGATAGACACTTGGAAAGATAATGATATTGATCATGAAATGTATATACCATTAGCCGGCCTGTTTCGTTGGCAAAAGAAGTGTCTAGAAGGGGATACTGACAATCATCAAAAGGTCAAGAAGGTGAGTACATGCCGGGAGCTTGTGGTGTACAAAAGGAAGAAGACTAAATCCCAGAAAGTGAGGTCAGGAGGTGATGATCAGAATGAACATCAAAATCATCTGGCTATTATTCCTCTTCCTGCTCAACATGATCCGGTAGAAGTTATACATTGTGATGATCTATATGACAAGGTTACTAGAAGTTATGGTAATGAATCCTCTGAAATTTCTTCCAAGTATCATCATCTAACTGGTACCACTTCAAAGAAGAACGATGTTAAATTGTTAACTTTTGAGTCTCATTATCATGCTGCAAAGTCAGATGATGGAGAAAAGAGTGATGATTTGTCATGGAGATATCATTATAGTTATGGCGCCCCTAAGTCACAGAGGAAGGGTTTAAGTGATCTGGATGATATGGTGAATCTTGGAAATAAATGGGAAGGGATTAGTTCCAGTAAAGTAGTTAAAGGGAAAAAACACCGTACAACATATTTTGGAAGTAGAGATCATGGAGAAGAAAAAAGATACAATTATAAAGACAGATCCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCATACTTGAAGAATATTAATACTAGACCAACCAATGAAGAACCAGCTATTGCTGACCAGTGGAAGCAAACGGAAACACCAAGCAGCATTGGGCAAAAGACAGAAACTGAGGTGCTCCGCAAAGAGGAGGCGGAAGAAGAATCTGAAATGGATATGCTGTGGAGAGAACTGGAAGTGTCATTGGCATCATGCTATCTAGAAGAAGACACAGAAGATTCAAATGCTGCTGTTTTCACTGAGACTCTGGAAAATCCGAATGCAGGTTGTCCTCATGATTTCAGAATGAATGAAGAAATTGGAATTTACTGCTATAGATGTGGCTTTGTGAGCACGGAGATCAAATATATTACACCTCCCTTTATTCAACATTCAGTGTGGCACCAAGAGGAGAAGCAGATCCCTGAAGAAGATTCAAAGACCAAGGCTAATGAAGACGATGACATTGATCTCTTGCCAGCTCTAGACTCTCCTGAGAAACCTGTGTCTCAAGAAAATGATAACGTTTGGGTGTTAATTCCCGAACTTAAAGCAAAGTTGCACGCCCACCAGAAGAAAGCATTTGAGTTTCTTTGGCAAAACATTGCAGGGTCCATGGACCCGGGATTGATGGAAGCAGCATCCAAAAGAAGAGGTGGCTGTGTGGTATCTCATACTCCTGGAGCGGGAAAAACTTTTCTCATCATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGAGGCCATTAGTCCTTGCTCCAAAGACAACACTCTATACTTGGTACAAGGAATTTATCAAGTGGGATATTCCTATACCAGTGTATCTGATTCATGGTCGTAGAACCTACCGTGTATTCAAGCAGAAATCCTCGATTGTTATTCCTGGAGTTCCTAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCGCACCCGAGTGTTCTGATCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTGCACATAGGAAATACATGGCTAAGGTATTGAGGGAAAGCCCTGGGGTCATGGTGCTGGATGAAGGGCACAATCCTAGAAGCACCAAATCTAGGCTGAGAAAAGTTTTGATGAAAGTGCAGACAGAACTGAGAATACTGCTTTCTGGCACATTGTTTCAGAACAATTTCTGCGAGTACTTCAACACTTTGTGCTTGGCAAGGCCAAAGTTTATTCATGAAGTACTGAAAGCATTGGACCCGAAATACAAGAGGAAAGGAAAAGTGGCAAAAAAAGCGAGTCATTTATTAGAGTCGCGAGCTAGAAAATTCTTCTTAGACCAAATTGCTAAGAAAATTGACTCAAGTAATGGTAGGGAGAGGCGGAAGGGTCTAAAGATGTTGAGAAATGTGACAAATGGTTTCATTGATGTGTATGAAGGTGGGAGTTCTGATGGTCTACCTGGTTTGCAAATTTATACATTGCTGATGAATTCAACTGATACACAGCACGAGATTTTGCATGAACTGCACAAGAAAATGGCCAAAGTCAATGGATACCCTCTGGAGCTAGAACTTTTGATAACTCTAGGTTCAATACATCCTTGGTTGGTGAAATCAGCAGTATGTGCTGAGAAATTTTTCACTCAAGCGCAATTGATGGAGCTAGAGAAATGCAAGTTTGATCTGAGAATAGGGTCCAAAGTAAAATTTGTTTTGAGTCTTATCTACAGGGTTGTCAAGAAGGAGAAGGTTCTTATATTTTGCCACAACATTGCACCTGTTAAGTTATTTGTGGAATATTTTGAGAAGTACTTTGGATGGACAAAAGGTAGGGAAGTGTTGGTGCTAACTGGGGAACTAGAGCTGTTTGAAAGGGGGAGAGTGATGGACAAGTTTGAGGAGCCTGGTGGAGTAGCAAAGATACTACTTGCTTCAATCACTGCTTGTGCTGAAGGCATTAGTTTAACAGCTGCTTCAAGAGTGATCATGTTGGACTCAGAGTGGAACCCTTCAAAAACAAAGCAAGCCATTGCCCGTGCCTTTCGCCCCGGTCAGCAGAAAGTTGTTTATGTTTATCAGCTCTTGGTGACAGGTTCATTGGAGGAAGATAAGTACAAAAGAACCACTTGGAAAGAGTGGGTTTCAAGCATGATCTTCAGTGAGGCCTTTGTGGAGGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTCAGGGAAATGGTTGCGGAGGACCGGTCTAAATCATTCCATATGATCATGAAGAATGAAAAAGCTTCTACCAACAAATAA
>Glyma14g06090.1 sequence type=predicted peptide gene model=Glyma14g06090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAHRKRRLDQLKHPFSPHPFEAVAFGSWQAVEFIKIEGGTMSMHFVDNHHMVMEKGPLSDIRIRSRNATLSDCSRFLRPGIDVCVLSAPQQSDDADAINIDPVWADAKISSVQRKPHDSECSCQFYVNFYVHQGSLGAELRTLSREIKVVGINQISILQKLESTPCENQHYRWASSEDCSIISHTKLLLGKVLCDLSWLVVTTALKKVSICVRSLQDKLVYQVLGRDTVSTSLNNESHIDVVNFKTDKGMLVPIVSQVATLKTKRVDPEQESHEDKESPSYNVEGLRRSKRRNVQPERYLGCEKVSQIDVGSFRNLPPVKIDTWKDNDIDHEMYIPLAGLFRWQKKCLEGDTDNHQKVKKVSTCRELVVYKRKKTKSQKVRSGGDDQNEHQNHLAIIPLPAQHDPVEVIHCDDLYDKVTRSYGNESSEISSKYHHLTGTTSKKNDVKLLTFESHYHAAKSDDGEKSDDLSWRYHYSYGAPKSQRKGLSDLDDMVNLGNKWEGISSSKVVKGKKHRTTYFGSRDHGEEKRYNYKDRSLNAAAYKDLINSYLKNINTRPTNEEPAIADQWKQTETPSSIGQKTETEVLRKEEAEEESEMDMLWRELEVSLASCYLEEDTEDSNAAVFTETLENPNAGCPHDFRMNEEIGIYCYRCGFVSTEIKYITPPFIQHSVWHQEEKQIPEEDSKTKANEDDDIDLLPALDSPEKPVSQENDNVWVLIPELKAKLHAHQKKAFEFLWQNIAGSMDPGLMEAASKRRGGCVVSHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSSIVIPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGVMVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDPKYKRKGKVAKKASHLLESRARKFFLDQIAKKIDSSNGRERRKGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILHELHKKMAKVNGYPLELELLITLGSIHPWLVKSAVCAEKFFTQAQLMELEKCKFDLRIGSKVKFVLSLIYRVVKKEKVLIFCHNIAPVKLFVEYFEKYFGWTKGREVLVLTGELELFERGRVMDKFEEPGGVAKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYKRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASTNK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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