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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G05440 | AT | Annotation by Michelle Graham. TAIR10: temperature sensing protein-related | chr4:2757274-2758275 FORWARD LENGTH=333 | SoyBase | E_val: 9.00E-157 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0010197 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2983 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR15323 | Panther | D123 PROTEIN | JGI | ISS | |
| PTHR15323:SF6 | Panther | gb def: hypothetical protein, similar to s. cerevisiae cdc123 schizosaccharomyces pombe | JGI | ISS | |
| PF07065 | PFAM | D123 | JGI | ISS | |
| UniRef100_G7IVD7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cell division cycle protein-like protein n=1 Tax=Medicago truncatula RepID=G7IVD7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M7P9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7P9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g06040 not represented in the dataset |
Glyma14g06040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g42905 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g055800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g06040.3 sequence type=transcript gene model=Glyma14g06040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCAAATATCAATTGTCCATCCACGATAGCTCGTTCAGGTTACCTCGTTCTGCGTTCTCCTTCAACACAACCGCGAAAACCTTAACTCAGAGCTCGTTCACCATACCACCCAAATCAATTGTCCAAAATCGCGGCTCAAACCGAACATTCGAACTTGAATCAGGAATTTTGGGGCAAGGTTGCTAGTGTTGGCAGGATTCAGGAGTAACTATAGTTCAAACCTAATAGTAGAAGAAAAGGAACTTCAGCTGGTTTTATTTGATAGAGAAACCACTGTTACAGAAATATGGAAGAGGAAGAGGTGAATCGATGCCAGATTCAGGAATGGTATCCAAAGTTCAAATCTGTATCCTTCAAGACCTTAATTCATCAACTTCCTGAATCATTTATTCAGTACCTTCTTGATGACTCAGGGCCCTTCCTGTTGCCTGATTCTGTCTTAAATGAAGATGCATTACCCAATAGAATTCATAACCCAGATGAGGAAGAAGATTTTCAGGTGTCTGAGGGATCTGGTGATGAAGCAGAAGCTTCTGCACCACCTTCTTTTCCAGAACTTGAATTGAAAATTAAGGACTTCATTGAGTCCCTTGGGGGTGCAGTCTTCCCTAAGCTGAATTGGAGTGCCCCGAAAGATTCAGCTTGGATAAGCACCTCTGGTACCCTTCGATGCATCAGTTTCAGTGAGATTGCACTTTTATTTCGAGCATCTGACTCATTGGTCCATGATTTGTGCCATGCTTATGATTCGTGCCAGGATAAATCTTCAACTAGACCCCAGAATTTCTTTCTTGCTCTCCGTAAATGGTATCCATCCCTTCAGCCAGACATGGAATTTCGATGTTTTGTACGGAATCAGAAATTAATTGGAATTTCTCAACGGGAGGTTACCACTTTTTATCCTGTTTTGCTTGAAAAGAAGAATGATCTCCTTTTTCTGATACAGGCATTTTTCATCAATCATGTGAGGGCTAAATTTGAGTCAGAAAACTACACATTTGATGTTTACATTACAAAGGATGACAGAGTTAAGATTGTGGATTTCAACCCTTGGGGTGCATTTACATTGTCATTGTTGTTTACATGGGATGAATTGGACCATATTCATAGTGAAGGAAATGATGTGGAGTTCAGAATTGTGGAAGATCGTTGTGCTGTTAGGCCAGGCCTTAAAACAGCAGTCCCATTTGACTACTTGGATACCAGCCCGGGGAGTGGTTGGGATCAATTTCTAAGAAATGCAGATGAAGAGTTAAGACGACAATCTACAGGAGCTGGTGCATGATAATCAGATGTTTTTTTTTATTATTTATTTTTAATTTCATTTCGAGAGTTTTGACAAACAAGGTGAAGACACATCTTTGAAAACATTACCCCGTAGAGGATGCAGTTTTCCTTTTAGTCGTAGTCTTTATGGTTTATAAGTTTTTATATTGGACTTCTAGTTGCCATTGTAAGTTGTATCCAAATATCAGGCCTCGGATAATTTAATGCTGAAACATCAGAGGCACATGGAGAGCTGAAGTGGCAATTGTCTATGATGAAACCAAATTATCTTCCCTTTTAAATTTTACATATGGAGAAAATATATCATGTATTGGCTTTTTGTATTATTCATGTGCCTAATTTTGTATGTTTCTTTCACTGCAAACACTTCCTAATGCGCCTTTGTTGCATCTCTTT
>Glyma14g06040.2 sequence type=CDS gene model=Glyma14g06040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAGGAAGAGGTGAATCGATGCCAGATTCAGGAATGGTATCCAAAGTTCAAATCTGTATCCTTCAAGACCTTAATTCATCAACTTCCTGAATCATTTATTCAGTACCTTCTTGATGACTCAGGGCCCTTCCTGTTGCCTGATTCTGTCTTAAATGAAGATGCATTACCCAATAGAATTCATAACCCAGATGAGGAAGAAGATTTTCAGGTGTCTGAGGGATCTGGTGATGAAGCAGAAGCTTCTGCACCACCTTCTTTTCCAGAACTTGAATTGAAAATTAAGGACTTCATTGAGTCCCTTGGGGGTGCAGTCTTCCCTAAGCTGAATTGGAGTGCCCCGAAAGATTCAGCTTGGATAAGCACCTCTGGTACCCTTCGATGCATCAGTTTCAGTGAGATTGCACTTTTATTTCGAGCATCTGACTCATTGGTCCATGATTTGTGCCATGCTTATGATTCGTGCCAGGATAAATCTTCAACTAGACCCCAGAATTTCTTTCTTGCTCTCCGTAAATGGTATCCATCCCTTCAGCCAGACATGGAATTTCGATGTTTTGTACGGAATCAGAAATTAATTGGAATTTCTCAACGGGAGGTTACCACTTTTTATCCTGTTTTGCTTGAAAAGAAGAATGATCTCCTTTTTCTGATACAGGCATTTTTCATCAATCATGTGAGGGCTAAATTTGAGTCAGAAAACTACACATTTGATGTTTACATTACAAAGGATGACAGAGTTAAGATTGTGGATTTCAACCCTTGGGGTGCATTTACATTGTCATTGTTGTTTACATGGGATGAATTGGACCATATTCATAGTGAAGGAAATGATGTGGAGTTCAGAATTGTGGAAGATCGTTGTGCTGTTAGGCCAGGCCTTAAAACAGCAGTCCCATTTGACTACTTGGATACCAGCCCGGGGAGTGGTTGGGATCAATTTCTAAGAAATGCAGATGAAGAGTTAAGACGACAATCTACAGGAGCTGGTGCATGA >Glyma14g06040.3 sequence type=CDS gene model=Glyma14g06040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAGGAAGAGGTGAATCGATGCCAGATTCAGGAATGGTATCCAAAGTTCAAATCTGTATCCTTCAAGACCTTAATTCATCAACTTCCTGAATCATTTATTCAGTACCTTCTTGATGACTCAGGGCCCTTCCTGTTGCCTGATTCTGTCTTAAATGAAGATGCATTACCCAATAGAATTCATAACCCAGATGAGGAAGAAGATTTTCAGGTGTCTGAGGGATCTGGTGATGAAGCAGAAGCTTCTGCACCACCTTCTTTTCCAGAACTTGAATTGAAAATTAAGGACTTCATTGAGTCCCTTGGGGGTGCAGTCTTCCCTAAGCTGAATTGGAGTGCCCCGAAAGATTCAGCTTGGATAAGCACCTCTGGTACCCTTCGATGCATCAGTTTCAGTGAGATTGCACTTTTATTTCGAGCATCTGACTCATTGGTCCATGATTTGTGCCATGCTTATGATTCGTGCCAGGATAAATCTTCAACTAGACCCCAGAATTTCTTTCTTGCTCTCCGTAAATGGTATCCATCCCTTCAGCCAGACATGGAATTTCGATGTTTTGTACGGAATCAGAAATTAATTGGAATTTCTCAACGGGAGGTTACCACTTTTTATCCTGTTTTGCTTGAAAAGAAGAATGATCTCCTTTTTCTGATACAGGCATTTTTCATCAATCATGTGAGGGCTAAATTTGAGTCAGAAAACTACACATTTGATGTTTACATTACAAAGGATGACAGAGTTAAGATTGTGGATTTCAACCCTTGGGGTGCATTTACATTGTCATTGTTGTTTACATGGGATGAATTGGACCATATTCATAGTGAAGGAAATGATGTGGAGTTCAGAATTGTGGAAGATCGTTGTGCTGTTAGGCCAGGCCTTAAAACAGCAGTCCCATTTGACTACTTGGATACCAGCCCGGGGAGTGGTTGGGATCAATTTCTAAGAAATGCAGATGAAGAGTTAAGACGACAATCTACAGGAGCTGGTGCATGA
>Glyma14g06040.2 sequence type=predicted peptide gene model=Glyma14g06040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEEEVNRCQIQEWYPKFKSVSFKTLIHQLPESFIQYLLDDSGPFLLPDSVLNEDALPNRIHNPDEEEDFQVSEGSGDEAEASAPPSFPELELKIKDFIESLGGAVFPKLNWSAPKDSAWISTSGTLRCISFSEIALLFRASDSLVHDLCHAYDSCQDKSSTRPQNFFLALRKWYPSLQPDMEFRCFVRNQKLIGISQREVTTFYPVLLEKKNDLLFLIQAFFINHVRAKFESENYTFDVYITKDDRVKIVDFNPWGAFTLSLLFTWDELDHIHSEGNDVEFRIVEDRCAVRPGLKTAVPFDYLDTSPGSGWDQFLRNADEELRRQSTGAGA* >Glyma14g06040.3 sequence type=predicted peptide gene model=Glyma14g06040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEEEVNRCQIQEWYPKFKSVSFKTLIHQLPESFIQYLLDDSGPFLLPDSVLNEDALPNRIHNPDEEEDFQVSEGSGDEAEASAPPSFPELELKIKDFIESLGGAVFPKLNWSAPKDSAWISTSGTLRCISFSEIALLFRASDSLVHDLCHAYDSCQDKSSTRPQNFFLALRKWYPSLQPDMEFRCFVRNQKLIGISQREVTTFYPVLLEKKNDLLFLIQAFFINHVRAKFESENYTFDVYITKDDRVKIVDFNPWGAFTLSLLFTWDELDHIHSEGNDVEFRIVEDRCAVRPGLKTAVPFDYLDTSPGSGWDQFLRNADEELRRQSTGAGA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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