Glyma14g05820 - SoyBase

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Report for Sequence Feature Glyma14g05820

Feature Type:	gene_model
Chromosome:	Gm14
Start:	4206868
stop:	4209615
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g05820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40480	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF827) \| chr2:16910425-16912444 FORWARD LENGTH=518	SoyBase	E_val: 1.00E-97	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05701	PFAM	Plant protein of unknown function (DUF827)	JGI		ISS
UniRef100_Q10LQ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q10LQ3_ORYSJ	SoyBase	E_val: 4.00E-41	ISS
UniRef100_UPI000233AE5C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AE5C related cluster n=1 Tax=unknown RepID=UPI000233AE5C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g05820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g05820

Paralog	Evidence	Comments
Glyma02g42696	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g05820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g053400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g05820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g05820

Limit To All Plant Sequences

>Glyma14g05820.2   sequence type=CDS   gene model=Glyma14g05820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAGTCGTCCCCGCCGGAAACGCCGGAACTGACAACCGAGTTCGGTGCCGGATCCGGGTCGGGTCAAAACTGGGGAGTAAGGAGAGTGGGTTTGAGAGCTGAAATTGATACTTCGCCGCCGTTTGGGTCTGTCAAGGAAGCGGTGACCCGTTTTGAAAAAACCGGACCTTGGATACCCCTTTTCAATTTTGGAGAGGCTTATAAAAGTGCTGAAGACTTTGACATAAAGAGAGTGGAGGAGGAAGCGGCGAAGTTGGAAAAGGATTTGATAGTGAAAGAACTCGAAACACTTGACGTGCTTGAAGAACTGGGAGCTACCAAAGCAATTTTGGAGGAATTAAAGCAGCAGCTACAATCAGAAGCATTGAATTGTTTTGCAACTCCGGGTGGAAATTCATATGAACAGGTTGGAGCTGCTGTTCAAAATTGTGTGAATGGTATCAATAATGAAGAGCAGGCATTGCAATGTCAGAGTCCGTGTGCTACTTCATCCCCTGATATGTTCATGATGGAGTTAGGACAAGCTAAAATAAGCCTTGGTAAAACTATAAGTGATCTCGGGGTGATACAGTCTTCTGTTGAAGCTTTAAATAAGAAGATGAAGAAGGAGAAGCTTTTTGTTGAGAGGACGCGCGAGAAGCTAGCATCAAAGTTTGCAACTGTATCTACTCAAGAAGTGGCCAAGAAAGAAACAAGGTTAAATCCACCTGAAGCTACTGTAGGAACAGGTTGCACTTGTCATCATCCCCTAAATATTGCGAGGAGTTTGAAATTTGATACTGGACAGTGCAATCTAATGAGTGAAACAAGAAGCTCTGAAGTTTCAAGGCCATTGCCTGAGTTTGGAGAAAATGGATTTAGTATCAAGACTGCTGAGATGAGGTGGTTTGCCGCTAAGAAGATGGAGGAAGCTGCAATGGCAGCAGAAGCTGTTGCTCTGGCCGAAATTGAGGCTCTATGTAACCCTGAGATATCATTGGAATTTGCTCCTCCACAACATCAGAAAGTGCCATTTGCCTTAGGGGAGCGCTCTCCTCTGCACCCCATAGTTCAAATTCCTCAAGAGTCAACCTTGGAGAAGGTGATTGATTCCAAGTTCCAAGTTGATAAAATAAGTTCTTCTAAACTGAGTATTTTGAAAAAATTGGAGGAAGCAACAGAAGAAGTTACACGCAGCAAACAAATCTTAAATGAGGCATTAAACAGTGTTGAAAGTGCAAACAGAAAGCAACATGCTGCTGAAGAGGCACTTCGGAGATGGATTCCTCAGGATGATCTAAGAGGTCAGCCAGTGTACAACTATATTAAGCCCAAGAAGTTCAATCAAGCTGGAAATTGTCAAGATTCTCCTCTACCAGATGTAACCAGGTCGATTACAGTGAACAATGATCAGAAGCCGATCTTAAAGTCTTCAGTTTCAATGAGAGATGTACTTAGCAAAAAGCAAGTTCCTGAAGAATATACAACTAAGGAGATGGAAGAGCACACTGAAAGAAAGGTAGCATTGAGTCAAATGCTTCGAGCATTGAGGCAGGATCAAACTCTGCCTACAATACCAGAGAAAGATGGGAGCAATCAAAGGCAGTTCATAGCACAGAGGAAAAAGTTTGGATTCATCCAAATATCACTCCCCTTGGGAAAGCGAAGAAAAAGGCATGAATTTAATCCTATTGCCTATGCATGGATCAATATCCAGAATTCATGCATCAGTGTCTTGCCATTCTTTATTGATTCTTATGTTTTGCTGCTTTTTTGTTAA

Predicted protein sequences of Glyma14g05820

Limit To All Plant Sequences

>Glyma14g05820.2   sequence type=predicted peptide   gene model=Glyma14g05820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAESSPPETPELTTEFGAGSGSGQNWGVRRVGLRAEIDTSPPFGSVKEAVTRFEKTGPWIPLFNFGEAYKSAEDFDIKRVEEEAAKLEKDLIVKELETLDVLEELGATKAILEELKQQLQSEALNCFATPGGNSYEQVGAAVQNCVNGINNEEQALQCQSPCATSSPDMFMMELGQAKISLGKTISDLGVIQSSVEALNKKMKKEKLFVERTREKLASKFATVSTQEVAKKETRLNPPEATVGTGCTCHHPLNIARSLKFDTGQCNLMSETRSSEVSRPLPEFGENGFSIKTAEMRWFAAKKMEEAAMAAEAVALAEIEALCNPEISLEFAPPQHQKVPFALGERSPLHPIVQIPQESTLEKVIDSKFQVDKISSSKLSILKKLEEATEEVTRSKQILNEALNSVESANRKQHAAEEALRRWIPQDDLRGQPVYNYIKPKKFNQAGNCQDSPLPDVTRSITVNNDQKPILKSSVSMRDVLSKKQVPEEYTTKEMEEHTERKVALSQMLRALRQDQTLPTIPEKDGSNQRQFIAQRKKFGFIQISLPLGKRRKRHEFNPIAYAWINIQNSCISVLPFFIDSYVLLLFC*

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