Glyma14g05780 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma14g05780

Feature Type:	gene_model
Chromosome:	Gm14
Start:	4175805
stop:	4176959
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g05780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19875	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:6718412-6718783 F	SoyBase	E_val: 3.00E-30	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_D7LEB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase/ transition metal ion binding protein n=2 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LEB2_ARALL	SoyBase	E_val: 5.00E-20	ISS
UniRef100_I1M7M2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M7M2_SOYBN	SoyBase	E_val: 3.00E-75	ISS

Expression Patterns of Glyma14g05780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g05780

Paralog	Evidence	Comments
Glyma02g42640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g05780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g053000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g05780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g05780

Limit To All Plant Sequences

>Glyma14g05780.1   sequence type=CDS   gene model=Glyma14g05780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAGGTACCACGATCCCTACTACTACTACTTGTGGGAGTACTTCTCTTTCCCACTCCACCTCGTCTTCTTCGTGTTCATCCTTTTCTTCGTGCTAGCGTTCTCGTGGTACATAAACTACGAGTCTTTGTTCGAGGACTTGCTCGTGCAGGTGAAGATCTTCCTCGCCCTCGTGCCTCTGCTCTTGTTGCTCCTCGTTCACTGCCTCTCGAGCGGAGCGTCGTTCCCAATACCCTTGCCGGAGGAGAGGGAGTCGCTGCACAGAGCTGGAGGGTCTCCGTGGGGTGTAGCACTCTTGCTTCTCTTCGTGTTGTTCATGATGGCATACCAATCTTCCTTCCACCAACGTTGGTTTCCTTTGGCTACTAGATGA

Predicted protein sequences of Glyma14g05780

Limit To All Plant Sequences

>Glyma14g05780.1   sequence type=predicted peptide   gene model=Glyma14g05780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARYHDPYYYYLWEYFSFPLHLVFFVFILFFVLAFSWYINYESLFEDLLVQVKIFLALVPLLLLLLVHCLSSGASFPIPLPEERESLHRAGGSPWGVALLLLFVLFMMAYQSSFHQRWFPLATR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain