SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04970 | AT | Annotation by Michelle Graham. TAIR10: lipid-binding serum glycoprotein family protein | chr1:1411216-1413431 FORWARD LENGTH=488 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0008289 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lipid binding | SoyBase | N/A | ISS |
| KOG4160 | KOG | BPI/LBP/CETP family protein | JGI | ISS | |
| PTHR10504 | Panther | BACTERICIDAL PERMEABILITY-INCREASING (BPI) PROTEIN | JGI | ISS | |
| PTHR10504:SF15 | Panther | BACTERICIDAL /PERMEABILITY-INCREASING PROTEIN-RELATED | JGI | ISS | |
| PF01273 | PFAM | LBP / BPI / CETP family, N-terminal domain | JGI | ISS | |
| PF02886 | PFAM | LBP / BPI / CETP family, C-terminal domain | JGI | ISS | |
| UniRef100_B9SSH9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lipopolysaccharide-binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSH9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M7K3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7K3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g05590 not represented in the dataset |
Glyma14g05590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g051400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g05590.1 sequence type=CDS gene model=Glyma14g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACCTTTCTTTGTTCTGTTTCTATTAGCCTCTTCATTGACTCAAGGGTATGCTCAATTTCAACCAAAAAACGAAGCTTTTATATCCTTGTTGATTACCCAAAATGGCCTTGACTTTGTGAAGGAGTTGCTGGTGAACAAGGCAATTTCCTCACTGGTCTCACTTCGATTGCCGAATATTGAAAAGACTGCGAAAATCCCAGTTGTGGGTAATGTCTACATGGTGCTCTCCAACATCACAATTTATCATATTGATGTTCCTTCCTCGCATGTCAAGCCAGGGGAGACAGGAATTTCCATTATAGCTTCTGGGGTTACTTGTAATTTGAGTATGAATTGGTATTACTCTTATAGTACATGGCTTGTGCCTGTTAAGATCTCTGACAGAGGTAGAGCAGAAGTTCAGGTTGAAGGCATGGAAGTAGGACTTACATTGGGTTTGGAGAACCAGGAAGGGTCTTTGAAGCTGAAACTCAAGGACTGCGGGTCTAATGTTAAAGATATTTCAATAAAATTGGATGGAGGTGCATCTTGGCTTTATCAAGGGATAGTTGATGCTTTTGAAGATAAAATTGGTTCAACAGTGGAAAATGCTATCGCCAAGAAACTTACGAAAGGGATTTCAAGCCTTGACTCGTATTTGAAAAGTCTTCCAAGGGAGGTCCCAGTTGATGATCATGCTTCTATGAATGTCACTTTTGTCAATGATGTTTTATTCAGTGATTCATCTGTTGGATTTGAAACCAATGGGTTATTTATAGAAAGAAAGATTTCCTTACCTATTCTTGACCTCGACCACAAGAACTCGAAACTTCCAATTTTATGCACAAATTCATCAAAAATGCTAGGGATCACTTTAGATGAGGCTGTTTTTAACTCCGCAACAGCCTTATATTATGATGCAAAATTTATGCACTGGATTGTTGACCAAATACCAGATCAATCTCTACTGAACACTGCAGGATGGAGATTTATTGTTCCCCAGCTGTACAAGAAATACCCAAATCATGACATGAACTTGAATGTATCTTTATCGTCTCCTCCAGTTGTGGAGATTTCAAATCAGAAAGCTGGTGCCACCATATTTGCAGACATGGCAATCGATGTTTTGGAAGAAGATGAAGTAATACCAGTGGCATGCATATCATTGGTAATTCAAGGTACAGGTCTGGTCAAAATCAAAGGAAACAACCTCGTAGGTTCTATCAGATTGAATGACTTTCAAATGTCATTGAAATGGAGCAACATTGGCAATCTGCGGGTGTACCTCATTCAGCCAGTTGTGTGGACGCTTATTGAAACTGTCTTCTTGCCATATGCAAATGCACGTCTGAGTAAAGGGTTACCTTTGCCCATCATTCATGGTTTCACCTTACAAAATGCAGAGATAATCTTGTCAACTTCAAGAATTGCAGTTTGCAGCGATGTAGCTTTTGCAGATTCAAACAAGCGTTTTCTTCAATTTCATTGA
>Glyma14g05590.1 sequence type=predicted peptide gene model=Glyma14g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPFFVLFLLASSLTQGYAQFQPKNEAFISLLITQNGLDFVKELLVNKAISSLVSLRLPNIEKTAKIPVVGNVYMVLSNITIYHIDVPSSHVKPGETGISIIASGVTCNLSMNWYYSYSTWLVPVKISDRGRAEVQVEGMEVGLTLGLENQEGSLKLKLKDCGSNVKDISIKLDGGASWLYQGIVDAFEDKIGSTVENAIAKKLTKGISSLDSYLKSLPREVPVDDHASMNVTFVNDVLFSDSSVGFETNGLFIERKISLPILDLDHKNSKLPILCTNSSKMLGITLDEAVFNSATALYYDAKFMHWIVDQIPDQSLLNTAGWRFIVPQLYKKYPNHDMNLNVSLSSPPVVEISNQKAGATIFADMAIDVLEEDEVIPVACISLVIQGTGLVKIKGNNLVGSIRLNDFQMSLKWSNIGNLRVYLIQPVVWTLIETVFLPYANARLSKGLPLPIIHGFTLQNAEIILSTSRIAVCSDVAFADSNKRFLQFH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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