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Report for Sequence Feature Glyma14g05485

Feature Type:gene_model
Chromosome:Gm14
Start:3926319
stop:3936543
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g05485
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G55250AT Annotation by Michelle Graham. TAIR10: histone mono-ubiquitination 2 | chr1:20607214-20612302 FORWARD LENGTH=899 SoyBaseE_val: 0ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007346GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010390GO-bp Annotation by Michelle Graham. GO Biological Process: histone monoubiquitination SoyBaseN/AISS
GO:0033523GO-bp Annotation by Michelle Graham. GO Biological Process: histone H2B ubiquitination SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
KOG0978 KOG E3 ubiquitin ligase involved in syntaxin degradation JGI ISS
PTHR23163Panther UNCHARACTERIZED JGI ISS
UniRef100_G7ZZJ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase BRE1-like protein n=1 Tax=Medicago truncatula RepID=G7ZZJ3_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233AE6CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233AE6C related cluster n=1 Tax=unknown RepID=UPI000233AE6C SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g05485
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g05485 not represented in the dataset
Glyma14g05485 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g05485
ParalogEvidenceComments
Glyma02g43493 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g05485 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g050200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g05485
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g05485
>Glyma14g05485.1   sequence type=CDS   gene model=Glyma14g05485   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACTCAGACCACGACGAACCCGAAAAGAAGAGGCCTCATCTCACCTCTGTCTCTTCCCGCACTCCTCGAAACTCCATCAACTCTCCTACCAACAACAAAACTGCTGACGCAGGAGTCTTACAGTTCCAGAATCAGCAGCTTGTTCAACAGATAGACATCCAAAAACATGCTTTGCATGATCTTGAAGAAAAAATTAGAGAATTAAAAGGAAAGCAAAGTTCCTATGACGACTTGTTAATTGCATTGAACCAACTCTGGACTCAGTTGGTTGATGATATGATTCTTCTTGGAATACGAGCTGGGAGAGGCAAAGGCAAAGACACATTGCAACATTTGACTGACATTGATAATCCTCAAGGTTCAGTTCCTTTGTGTCCTGCTGAGGATATGTTTCTATGTAGATTAATCCAGAAAGATTCCATTAAAGGAATCAGTGATGATGAGATCATTAGTTATGTTGAGGAGGCCCTTGCTTTGCGTCAGTCATATACAAGGGAGCTGTTGAAACTCCTGAAAGATACCATTGATGATCAGATGGAAAGAGCAGGCAGTATAGCTCAGGTTTTACATGGAGATTTATCTTCTGAAGATGCTATAATCCAAATGTCTAAGATTGATGATATGACGAAAGAGGAGGTAGATAATTTCCGTGAAGTGGTTGATACTCTCCATGCAAAACATAAAGAGTATACAGTTGCTATTCAAAATTCTATTAATGAGTACTCACAAGATCAATCTGAGATTAAACGCCTTGCAGGTGAGCTTGATGAGATTGTGGCTGAACTAGAAGAGAGTAGAAGAAAACTAGTCAATCTGGAAATGCAAAAGGATGCAGCAATAGGAATGAATTCCCCCAAAGCAGATGCAGTGAATGGAAACCTGTCCCCTGAAAACATTGCTGACAGGACCATGGGTTTGCGTGAGTTGAAGGATTCAATTGAGGAAGCAAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCACAAGAAGACAATCAGACCTTGACGAAGCAGTTCCAAGATCTTCAGAATGAACTGAAAGATGATAAGTATGTGCGCACTTCTCGAATATACTCTTTGGCTAATGATCAGCTTCAACATTGGATGACTGAATTGGCCCGATATAAAACATCGGTAGAATCTCTGCAGGCTGGCAGTGTTCATGTTGCAAAATGGGAGAATGAACTAAATTTGAAATTGGAGTCTGCTGATAGTGCAAGGCAGATCCTTGGCAATTCTGACCATAGGATTGATGACCTAGAGCTTCAGTTGCAGAAGTGTATTATTGAAAAGAATGATCTTGAAATTAAAATGGAAGAAGCTAAACAGGATACTGGGAGAAAAGATATCAAATCTGAGTTTCATGTTATGGCTTCAGCTTTATCTAAAGAAATGGGAATGATGGAAGGTCAATTAAAGCGATGGAAAGATGCAGCTCATGAGGCTGTATCATTACGTGAGAAAGCACATTCACTAAGAGAAGCATTGAGCACGAAGACAAGTGAACTTAAGAGCCTTGCAAACAAATGTGCTGAACAGGTTTTGGAAATCAAGTCTTTAAAAACATTGACTGAAAAGTTACAGAAGGAGAATCAGGAATTAGAGTTTGTTCTGGATATGCATGGCCTGGAGAATTATGATAAAAGATATTCGGAAGTAAGAGAATCTGAAAGTAAAGCTCACTCTCAAGCTGAAATGCTGAAAAATGCTTTAGATGAGCATAGCCTAGAGTTGAGAGTAAAAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCCGCAGAAGCTGAAATAGAGGACTTGAGGTCCAAGCTGGATGCATCTGAGAGGGATATTTTGGAGCTGACTGAGGCTGTTAAAGTTAAAGATGCTGAGGCAGAGGCATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTTGAACCAGGTGATCGAGAGGGATGACTATAATATTAAGCTTGTATCAGATAGTGTGAAGACAAAACAGGCGCACAACACTTTAATGTCCCAGAAGCAGGCCTTAGCTAAGCAACTTCAACAAATCAATACATCAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAGATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACACCTTGCAGTCACCCTGGAATTTGCAAAATGGGAATTGGCTGATGCCGAGAAGGAATTGAAGTTGCTCAAGTCTGCTGTTTCCTCTTCAGAGAAAGAATACGATCAAATTCAGAAAGATACGGAAGCTATTGAAATGGAATTGGAGAGTGAAAGGAGTTTACGGAAGAAGCTTGAGGAAGAACTAAGAGAATTGAACTGCAAAATTGATGAGCTGACTTCTGAAACTGGAGAAACCACGATACAAAAACTCGAAAAAGAAATAAGGATTTGCAAGAACATGATCAAGTGTACTGTCTGTACTGATCGTCCAAAGGAGGTTGTGATTGTCAAGTGCTATCATCTGTTCTGCAATCCATGCATTCAGAGAAATCTAGAGCTTCGGCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAGAGTGATGTCCGCTTTGTAAAAATATGA
Predicted protein sequences of Glyma14g05485
>Glyma14g05485.1   sequence type=predicted peptide   gene model=Glyma14g05485   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENSDHDEPEKKRPHLTSVSSRTPRNSINSPTNNKTADAGVLQFQNQQLVQQIDIQKHALHDLEEKIRELKGKQSSYDDLLIALNQLWTQLVDDMILLGIRAGRGKGKDTLQHLTDIDNPQGSVPLCPAEDMFLCRLIQKDSIKGISDDEIISYVEEALALRQSYTRELLKLLKDTIDDQMERAGSIAQVLHGDLSSEDAIIQMSKIDDMTKEEVDNFREVVDTLHAKHKEYTVAIQNSINEYSQDQSEIKRLAGELDEIVAELEESRRKLVNLEMQKDAAIGMNSPKADAVNGNLSPENIADRTMGLRELKDSIEEAKIVDADRLSELQDAQEDNQTLTKQFQDLQNELKDDKYVRTSRIYSLANDQLQHWMTELARYKTSVESLQAGSVHVAKWENELNLKLESADSARQILGNSDHRIDDLELQLQKCIIEKNDLEIKMEEAKQDTGRKDIKSEFHVMASALSKEMGMMEGQLKRWKDAAHEAVSLREKAHSLREALSTKTSELKSLANKCAEQVLEIKSLKTLTEKLQKENQELEFVLDMHGLENYDKRYSEVRESESKAHSQAEMLKNALDEHSLELRVKAANEAEAACEQRLSAAEAEIEDLRSKLDASERDILELTEAVKVKDAEAEAYISEIETIGQAYEDMQTQNQNLLNQVIERDDYNIKLVSDSVKTKQAHNTLMSQKQALAKQLQQINTSIENSKTRITHSEEQMKAILSDAIKCNQEEKHLAVTLEFAKWELADAEKELKLLKSAVSSSEKEYDQIQKDTEAIEMELESERSLRKKLEEELRELNCKIDELTSETGETTIQKLEKEIRICKNMIKCTVCTDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI*






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