Glyma14g05460 - SoyBase

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Report for Sequence Feature Glyma14g05460

Feature Type:	gene_model
Chromosome:	Gm14
Start:	3908460
stop:	3913092
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g05460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04990	AT	Annotation by Michelle Graham. TAIR10: Zinc finger C-x8-C-x5-C-x3-H type family protein \| chr1:1419368-1421454 REVERSE LENGTH=404	SoyBase	E_val: 1.00E-113	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1677	KOG	CCCH-type Zn-finger protein	JGI		ISS
PTHR12506	Panther	PROTEIN PHOSPHATASE RELATED	JGI		ISS
PTHR12506:SF11	Panther	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00642	PFAM	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	JGI		ISS
UniRef100_G7KH86	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KH86_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M7J0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7J0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g05460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g05460 not represented in the dataset	Glyma14g05460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g05460

Paralog	Evidence	Comments
Glyma02g43510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g05460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g050000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g05460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g05460

Limit To All Plant Sequences

>Glyma14g05460.2   sequence type=transcript   gene model=Glyma14g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCCGAAGATTGCAGAACCACAGCCAGGAAACTCTAAGCTAATCTGACGCCAACTTTCATCCAATTGGAATATTATTAAATCTCTTTTTAAGATTTCACATTTTGATTCTTCTCAATTTTATCTGCGATTCTCGCTTGGTACCTTTGTTTTGTTTTTAATATTTTAGTTTTCCTGGATTTTTATTTTTTTTATTTTTTATTGTTTTTAGTCTTTGGTCAATTTTCACTGTCTCCTGATGATCATTTTACCATGTGGGGTGAGTTAATTTGAGATTGTTGTGCGCTGATTTCTTCTTAAAGGCTCAAAGGGTTTTCTGGGTTTGATCGAACAAGCAAAAAAAAAGAGTCTTCTGTTATCCTTTCAACGCTACCAGATGCCGGAAAACAGGCAGGTTCTGAGGAATGCTGATTCTAGTGACAACATTGAAGCAATTCGGCGTTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATATCCAGATCGACCCGGTGAACCTGAGTGCTTGTATTATTTGAGGACTGGAGCGTGTGGTTATGGGAGTAACTGTCGCTACCATCACCCTGCTCATATTTCAATTGGTACTCATTATGGTGAAGAACTCCCTCAGAGGGCAGGGCAACCTGATTGCGAGTATTTTCTTAAGACTGGGATGTGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCTCCCGTGTCATTCAATACTTTAGGTTTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGTATGCTTCCCTCGGAGCATACCCATTGGCTGGTGGACCTCCTACTCCTACCTCAACAATTATTCCTACATCAGGTTTATCATATGCTGGAGGGTTTCCTGCATGGTCAGCAGTACCAAGAATGTCGTATTTATCTGGACAAGGCCTTCAATCATATGTGCCTCCTTTTCTGCCTTCTTCACAAGGTGTTATACCTGTGCAGAGCTGGAACAACTACATGGGAAATATGAACCCTGCAATGCCGAACGGTTTTCTTGGATCTAATCTTGTTTATGACTACATGAATCTGGGCGAGCCACTTTTTGGTGGGCAGGCAATCAATTCAGCTCTCCCGAATAGACCAGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCACCCAAAGGAAAGAATATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTATTACAGAATCTATGGAATGTGCAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTATGAATGTACTTGATACTCCTCTCACCAGGGGGTTATCAAATGTACAACCACCTGAGACATCTCCTTCTAAATTATCAAGTGACAACAAGCTTCAGCATTCTGATGCAAAAGCTGCTACAGAAGATTCATCCAAACAAGATGATACTACATCAAATTCCTTCCCGGCTTCTGCAGAGCCATTACACGACTAAACTACTTGAAGTTTGAATTTTTTTTCTTTCTTTTGGACATTTTATTTTTCCCCACATTTTCAGGAGAAGTATATAATACATACCATCTATTCCCCCCTTTTCACCTGCAATTCTGTGGAGTTGGATAGTTTGTTCAGAGGTTGTTGTGACAACCACTAGCTTGTGGGGAATGGAAGGCATTTTTTGTGGTGAATAAAGTGCAGGTAGAAAGATTATGACCCTTC

>Glyma14g05460.3   sequence type=transcript   gene model=Glyma14g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAACTTGTCGGGTTTCACATTTAAAGATCCAAAATGTTCCGAAGATTGCAGAACCACAGCCAGGAAACTCTAAGCTAATCTGACGCCAACTTTCATCCAATTGGAATATTATTAAATCTCTTTTTAAGATTTCACATTTTGATTCTTCTCAATTTTATCTGCGATTCTCGCTTGGCTCAAAGGGTTTTCTGGGTTTGATCGAACAAGCAAAAAAAAAGAGTCTTCTGTTATCCTTTCAACGCTACCAGATGCCGGAAAACAGGCAGGTTCTGAGGAATGCTGATTCTAGTGACAACATTGAAGAAGCAATTCGGCGTTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATATCCAGATCGACCCGGTGAACCTGAGTGCTTGTATTATTTGAGGACTGGAGCGTGTGGTTATGGGAGTAACTGTCGCTACCATCACCCTGCTCATATTTCAATTGGTACTCATTATGGTGAAGAACTCCCTCAGAGGGCAGGGCAACCTGATTGCGAGTATTTTCTTAAGACTGGGATGTGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCTCCCGTGTCATTCAATACTTTAGGTTTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGTATGCTTCCCTCGGAGCATACCCATTGGCTGGTGGACCTCCTACTCCTACCTCAACAATTATTCCTACATCAGGTTTATCATATGCTGGAGGGTTTCCTGCATGGTCAGCAGTACCAAGAATGTCGTATTTATCTGGACAAGGCCTTCAATCATATGTGCCTCCTTTTCTGCCTTCTTCACAAGGTGTTATACCTGTGCAGAGCTGGAACAACTACATGGGAAATATGAACCCTGCAATGCCGAACGGTTTTCTTGGATCTAATCTTGTTTATGACTACATGAATCTGGGCGAGCCACTTTTTGGTGGGCAGGCAATCAATTCAGCTCTCCCGAATAGACCAGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCACCCAAAGGAAAGAATATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTATTACAGAATCTATGGAATGTGCAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTATGAATGTACTTGATACTCCTCTCACCAGGGGGTTATCAAATGTACAACCACCTGAGACATCTCCTTCTAAATTATCAAGTGACAACAAGCTTCAGCATTCTGATGCAAAAGCTGCTACAGAAGATTCATCCAAACAAGATGATACTACATCAAATTCCTTCCCGGCTTCTGCAGAGCCATTACACGACTAAACTACTTGAAGTTTGAATTTTTTTTCTTTCTTTTGGACATTTTATTTTTCCCCACATTTTCAGGAGAAGTATATAATACATACCATCTATTCCCCCCTTTTCACCTGCAATTCTGTGGAGTTGGATAGTTTGTTCAGAGGTTGTTGTGACAACCACTAGCTTGTGGGGAATGGAAGGCATTTTTTGTGGTGAATAAAGTGCAGGTAGAAAGATTATGACCCTTC

Coding sequences of Glyma14g05460

Limit To All Plant Sequences

>Glyma14g05460.1   sequence type=CDS   gene model=Glyma14g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGAAAACAGGCAGGTTCTGAGGAATGCTGATTCTAGTGACAACATTGAAGAAGCAATTCGGCGTTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATATCCAGATCGACCCGGTGAACCTGAGTGCTTGTATTATTTGAGGACTGGAGCGTGTGGTTATGGGAGTAACTGTCGCTACCATCACCCTGCTCATATTTCAATTGGTACTCATTATGGTGAAGAACTCCCTCAGAGGGCAGGGCAACCTGATTGCGAGTATTTTCTTAAGACTGGGATGTGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCTCCCGTGTCATTCAATACTTTAGGTTTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGTATGCTTCCCTCGGAGCATACCCATTGGCTGGTGGACCTCCTACTCCTACCTCAACAATTATTCCTACATCAGGTTTATCATATGCTGGAGGGTTTCCTGCATGGTCAGCAGTACCAAGAATGTCGTATTTATCTGGACAAGGCCTTCAATCATATGTGCCTCCTTTTCTGCCTTCTTCACAAGGTGTTATACCTGTGCAGAGCTGGAACAACTACATGGGAAATATGAACCCTGCAATGCCGAACGGTTTTCTTGGATCTAATCTTGTTTATGACTACATGAATCTGGGCGAGCCACTTTTTGGTGGGCAGGCAATCAATTCAGCTCTCCCGAATAGACCAGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCACCCAAAGGAAAGAATATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTATTACAGAATCTATGGAATGTGCAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTATGAATGTACTTGATACTCCTCTCACCAGGGGGTTATCAAATGTACAACCACCTGAGACATCTCCTTCTAAATTATCAAGTGACAACAAGCTTCAGCATTCTGATGCAAAAGCTGCTACAGAAGATTCATCCAAACAAGATGATACTACATCAAATTCCTTCCCGGCTTCTGCAGAGCCATTACACGACTAA

>Glyma14g05460.2   sequence type=CDS   gene model=Glyma14g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGAAAACAGGCAGGTTCTGAGGAATGCTGATTCTAGTGACAACATTGAAGCAATTCGGCGTTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATATCCAGATCGACCCGGTGAACCTGAGTGCTTGTATTATTTGAGGACTGGAGCGTGTGGTTATGGGAGTAACTGTCGCTACCATCACCCTGCTCATATTTCAATTGGTACTCATTATGGTGAAGAACTCCCTCAGAGGGCAGGGCAACCTGATTGCGAGTATTTTCTTAAGACTGGGATGTGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCTCCCGTGTCATTCAATACTTTAGGTTTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGTATGCTTCCCTCGGAGCATACCCATTGGCTGGTGGACCTCCTACTCCTACCTCAACAATTATTCCTACATCAGGTTTATCATATGCTGGAGGGTTTCCTGCATGGTCAGCAGTACCAAGAATGTCGTATTTATCTGGACAAGGCCTTCAATCATATGTGCCTCCTTTTCTGCCTTCTTCACAAGGTGTTATACCTGTGCAGAGCTGGAACAACTACATGGGAAATATGAACCCTGCAATGCCGAACGGTTTTCTTGGATCTAATCTTGTTTATGACTACATGAATCTGGGCGAGCCACTTTTTGGTGGGCAGGCAATCAATTCAGCTCTCCCGAATAGACCAGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCACCCAAAGGAAAGAATATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTATTACAGAATCTATGGAATGTGCAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTATGAATGTACTTGATACTCCTCTCACCAGGGGGTTATCAAATGTACAACCACCTGAGACATCTCCTTCTAAATTATCAAGTGACAACAAGCTTCAGCATTCTGATGCAAAAGCTGCTACAGAAGATTCATCCAAACAAGATGATACTACATCAAATTCCTTCCCGGCTTCTGCAGAGCCATTACACGACTAA

>Glyma14g05460.3   sequence type=CDS   gene model=Glyma14g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGAAAACAGGCAGGTTCTGAGGAATGCTGATTCTAGTGACAACATTGAAGAAGCAATTCGGCGTTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATATCCAGATCGACCCGGTGAACCTGAGTGCTTGTATTATTTGAGGACTGGAGCGTGTGGTTATGGGAGTAACTGTCGCTACCATCACCCTGCTCATATTTCAATTGGTACTCATTATGGTGAAGAACTCCCTCAGAGGGCAGGGCAACCTGATTGCGAGTATTTTCTTAAGACTGGGATGTGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCTCCCGTGTCATTCAATACTTTAGGTTTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGTATGCTTCCCTCGGAGCATACCCATTGGCTGGTGGACCTCCTACTCCTACCTCAACAATTATTCCTACATCAGGTTTATCATATGCTGGAGGGTTTCCTGCATGGTCAGCAGTACCAAGAATGTCGTATTTATCTGGACAAGGCCTTCAATCATATGTGCCTCCTTTTCTGCCTTCTTCACAAGGTGTTATACCTGTGCAGAGCTGGAACAACTACATGGGAAATATGAACCCTGCAATGCCGAACGGTTTTCTTGGATCTAATCTTGTTTATGACTACATGAATCTGGGCGAGCCACTTTTTGGTGGGCAGGCAATCAATTCAGCTCTCCCGAATAGACCAGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCACCCAAAGGAAAGAATATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTATTACAGAATCTATGGAATGTGCAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTATGAATGTACTTGATACTCCTCTCACCAGGGGGTTATCAAATGTACAACCACCTGAGACATCTCCTTCTAAATTATCAAGTGACAACAAGCTTCAGCATTCTGATGCAAAAGCTGCTACAGAAGATTCATCCAAACAAGATGATACTACATCAAATTCCTTCCCGGCTTCTGCAGAGCCATTACACGACTAA

Predicted protein sequences of Glyma14g05460

Limit To All Plant Sequences

>Glyma14g05460.1   sequence type=predicted peptide   gene model=Glyma14g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPENRQVLRNADSSDNIEEAIRRLKINDNWDRDAAAQSTQYPDRPGEPECLYYLRTGACGYGSNCRYHHPAHISIGTHYGEELPQRAGQPDCEYFLKTGMCKYGSTCKYHHPKDRRGAAPVSFNTLGFPMRQEEKSCPYYMRTGSCKFGVACKFHHPQYASLGAYPLAGGPPTPTSTIIPTSGLSYAGGFPAWSAVPRMSYLSGQGLQSYVPPFLPSSQGVIPVQSWNNYMGNMNPAMPNGFLGSNLVYDYMNLGEPLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERISQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPAMNVLDTPLTRGLSNVQPPETSPSKLSSDNKLQHSDAKAATEDSSKQDDTTSNSFPASAEPLHD*

>Glyma14g05460.2   sequence type=predicted peptide   gene model=Glyma14g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPENRQVLRNADSSDNIEAIRRLKINDNWDRDAAAQSTQYPDRPGEPECLYYLRTGACGYGSNCRYHHPAHISIGTHYGEELPQRAGQPDCEYFLKTGMCKYGSTCKYHHPKDRRGAAPVSFNTLGFPMRQEEKSCPYYMRTGSCKFGVACKFHHPQYASLGAYPLAGGPPTPTSTIIPTSGLSYAGGFPAWSAVPRMSYLSGQGLQSYVPPFLPSSQGVIPVQSWNNYMGNMNPAMPNGFLGSNLVYDYMNLGEPLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERISQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPAMNVLDTPLTRGLSNVQPPETSPSKLSSDNKLQHSDAKAATEDSSKQDDTTSNSFPASAEPLHD*

>Glyma14g05460.3   sequence type=predicted peptide   gene model=Glyma14g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPENRQVLRNADSSDNIEEAIRRLKINDNWDRDAAAQSTQYPDRPGEPECLYYLRTGACGYGSNCRYHHPAHISIGTHYGEELPQRAGQPDCEYFLKTGMCKYGSTCKYHHPKDRRGAAPVSFNTLGFPMRQEEKSCPYYMRTGSCKFGVACKFHHPQYASLGAYPLAGGPPTPTSTIIPTSGLSYAGGFPAWSAVPRMSYLSGQGLQSYVPPFLPSSQGVIPVQSWNNYMGNMNPAMPNGFLGSNLVYDYMNLGEPLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERISQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPAMNVLDTPLTRGLSNVQPPETSPSKLSSDNKLQHSDAKAATEDSSKQDDTTSNSFPASAEPLHD*

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