Glyma14g05400 - SoyBase

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Report for Sequence Feature Glyma14g05400

Feature Type:	gene_model
Chromosome:	Gm14
Start:	3835413
stop:	3839651
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g05400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05000	AT	Annotation by Michelle Graham. TAIR10: Phosphotyrosine protein phosphatases superfamily protein \| chr1:1425660-1428393 FORWARD LENGTH=215	SoyBase	E_val: 2.00E-100	ISS
GO:0016311	GO-bp	Annotation by Michelle Graham. GO Biological Process: dephosphorylation	SoyBase	N/A	ISS
GO:0043407	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of MAP kinase activity	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004721	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoprotein phosphatase activity	SoyBase	N/A	ISS
GO:0004725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity	SoyBase	N/A	ISS
GO:0016791	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatase activity	SoyBase	N/A	ISS
KOG1572	KOG	Predicted protein tyrosine phosphatase	JGI		ISS
PF03162	PFAM	Tyrosine phosphatase family	JGI		ISS
UniRef100_G7KH96	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tyrosine specific protein phosphatase family protein n=1 Tax=Medicago truncatula RepID=G7KH96_MEDTR	SoyBase	E_val: 6.00E-125	ISS
UniRef100_I1JII4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JII4_SOYBN	SoyBase	E_val: 1.00E-135	ISS

Expression Patterns of Glyma14g05400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g05400 not represented in the dataset	Glyma14g05400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g05400

Paralog	Evidence	Comments
Glyma02g43550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g05400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g049600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g05400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g05400

Limit To All Plant Sequences

>Glyma14g05400.4   sequence type=transcript   gene model=Glyma14g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGCATTTTGGTATTGTTGGGCACCTTTGTGTATAAATATGGGGTATATCACCTTCCTTACATTCACTTCATTTCACTCACCCCTTTAACTGCCATCCATTCTTTCTCTCTTGAGGGGCAGGGGTACCACCTCAAAGAATATCCTCTTTGATCCCTTTCTCTATTTCCTTTTCTTTATTATTATTATATAATAACACCCTCTAAATACTTCCTTTACCCCTCTTTCTCTCTCTCATCTTAAACACAAACAAATATACTACTACTTCAAACTTTGATATGCAACTGGCGGCAGAACTCCAACGCACCCATCACCGCCACCAAAGGCAAAGGCAACAACAGGACACCACCCCCATGTGCCGCCAAATCCAGCTCACTATCTCCGATCACACCGTCGCCGGAGACGCCGTCGCTGACGACGGCGAGGATCTCTTCATTCCGCCCCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTTCGTTCCATCATATATCTGTGTCCTGAGCCGTATCCGGAGGCCAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTTTCAGTTTGGGATTGAGGGCCATAAGGAGCCTTTTGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAGAAGTTGTTCTTGATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGGGGAAAGCACCGAACAGGTTGCTTGGTAGGATGCTATAGAAAATTGCAAAAATGGTGCTTGTCATCCGTCTTTGATGAATACCAACGCTTTGCAGCCGCCAAAGCAAGAGTTTCAGATCAGAGGTTCGTAGAGTTGTTTGATATTTCCAGCATGAAACATTTGCCCATACCCTTTTCATGTTTGAAGAGGTAACATATACCAAGCTATGCTGAGTTGGGTTTACTTTCTTTAGTTTGTGAAAGTGAAGCCAAGGTTCTTCCTTTGAATAAATAGGAAAAGGTGATGAACTCCTTCAATGCATTGCAGCGGCAAAGGAATAATTCTTCTCCCATTTTCAAAATAAGACAAGAAAATTCTAGGAATAGTAGAGCATTACCTGTATTTGTATGTGTTAAAATTCTGCCCTATATTTCCCTTCTCTCCCTACAATTGGCCCTTAGTGTACCTCACCACCTTTTGTCCTATTTTCTTTCTCTTTATTTTTATGTTTTTCTTTGCTGCTCCCCATTCATCAACAATGAGTGTAGATATATCTTGATTTTTTCTCGAGGCTCAGAGAAATTCAAGAAGGCTACAAAAATGACTTGTTTGTCTACCCAAAATCTTGGTGGGTAGTAAAGCAGAGGAACTTATAAAATTTTATTTGCTAGATTAATATTGCTTTTCTTATTTTATGTTGACACTAGCGCAGTTCAGTGAGATGGTTATTCTCTTATGCTAATTGCATGCTGGTGGAAAACGTGGCAGTGTTTTGTAGGGACTTGCATATACTTGCATTTTATTATAAAATATAAATATAAG

>Glyma14g05400.5   sequence type=transcript   gene model=Glyma14g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTGCCATCCATTCTTTCTCTCTTGAGGGGCAGGGGTACCACCTCAAAGAATATCCTCTTTGATCCCTTTCTCTATTTCCTTTTCTTTATTATTATTATATAATAACACCCTCTAAATACTTCCTTTACCCCTCTTTCTCTCTCTCATCTTAAACACAAACAAATATACTACTACTTCAAACTTTGATATGCAACTGGCGGCAGAACTCCAACGCACCCATCACCGCCACCAAAGGCAAAGGCAACAACAGGACACCACCCCCATGTGCCGCCAAATCCAGCTCACTATCTCCGATCACACCGTCGCCGGAGACGCCGTCGCTGACGACGGCGAGGATCTCTTCATTCCGCCCCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTTCGTTCCATCATATATCTGTGTCCTGAGCCGTATCCGGAGGCCAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTTTCAGTTTGGGATTGAGGGCCATAAGGAGCCTTTTGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAGAAGTTGTTCTTGATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGGGGAAAGCACCGAACAGGTTGCTTGGTAGGATGCTATAGAAAATTGCAAAAATGGTGCTTGTCATCCGTCTTTGATGAATACCAACGCTTTGCAGCCGCCAAAGCAAGAGTTTCAGATCAGAGTTTGTGAAAGTGAAGCCAAGGTTCTTCCTTTGAATAAATAGGAAAAGGTGATGAACTCCTTCAATGCATTGCAGCGGCAAAGGAATAATTCTTCTCCCATTTTCAAAATAAGACAAGAAAATTCTAGGAATAGTAGAGCATTACCTGTATTTGTATGTGTTAAAATTCTGCCCTATATTTCCCTTCTCTCCCTACAATTGGCCCTTAGTGTACCTCACCACCTTTTGTCCTATTTTCTTTCTCTTTATTTTTATGTTTTTCTTTGCTGCTCCCCATTCATCAACAATGAGTGTAGATATATCTTGATTTTTTCTCGAGGCTCAGAGAAATTCAAGAAGGCTACAAAAATGACTTGTTTGTCTACCCAAAATCTTGGTGGGTAGTAAAGCAGAGGAACTTATAAAATTTTATTTGCTAGATTAATATTGCTTTTCTTATTTTATGTTGACACTAGCGCAGTTCAGTGAGATGGTTATTCTCTTATGCTAATTGCATGCTGGTGGAAAACGTGGCAGTGTTTTGTAGGGACTTGCATATACTTGCATTTTATTATAAAATATAAATATAAG

Coding sequences of Glyma14g05400

Limit To All Plant Sequences

>Glyma14g05400.3   sequence type=CDS   gene model=Glyma14g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACTGGCGGCAGAACTCCAACGCACCCATCACCGCCACCAAAGGCAAAGGCAACAACAGGACACCACCCCCATGTGCCGCCAAATCCAGCTCACTATCTCCGATCACACCGTCGCCGGAGACGCCGTCGCTGACGACGGCGAGGATCTCTTCATTCCGCCCCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTTCGTTCCATCATATATCTGTGTCCTGAGCCGTATCCGGAGGCCAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTTTCAGTTTGGGATTGAGGGCCATAAGGAGCCTTTTGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAGAAGTTGTTCTTGATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGGGGAAAGCACCGAACAGGTTGCTTGGTAGGATGCTATAGAAAATTGCAAAAATGGTGCTTGTCATCCGTCTTTGATGAATACCAACGCTTTGCAGCCGCCAAAGCAAGAGTTTCAGATCAGAGGTTCGTAGAGTTGTTTGATATTTCCAGCATGAAACATTTGCCCATACCCTTTTCATGTTTGAAGAGGAAAAGGTGA

>Glyma14g05400.4   sequence type=CDS   gene model=Glyma14g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACTGGCGGCAGAACTCCAACGCACCCATCACCGCCACCAAAGGCAAAGGCAACAACAGGACACCACCCCCATGTGCCGCCAAATCCAGCTCACTATCTCCGATCACACCGTCGCCGGAGACGCCGTCGCTGACGACGGCGAGGATCTCTTCATTCCGCCCCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTTCGTTCCATCATATATCTGTGTCCTGAGCCGTATCCGGAGGCCAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTTTCAGTTTGGGATTGAGGGCCATAAGGAGCCTTTTGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAGAAGTTGTTCTTGATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGGGGAAAGCACCGAACAGGTTGCTTGGTAGGATGCTATAGAAAATTGCAAAAATGGTGCTTGTCATCCGTCTTTGATGAATACCAACGCTTTGCAGCCGCCAAAGCAAGAGTTTCAGATCAGAGGTTCGTAGAGTTGTTTGATATTTCCAGCATGAAACATTTGCCCATACCCTTTTCATGTTTGAAGAGGTAA

>Glyma14g05400.5   sequence type=CDS   gene model=Glyma14g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACTGGCGGCAGAACTCCAACGCACCCATCACCGCCACCAAAGGCAAAGGCAACAACAGGACACCACCCCCATGTGCCGCCAAATCCAGCTCACTATCTCCGATCACACCGTCGCCGGAGACGCCGTCGCTGACGACGGCGAGGATCTCTTCATTCCGCCCCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTTCGTTCCATCATATATCTGTGTCCTGAGCCGTATCCGGAGGCCAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTTTCAGTTTGGGATTGAGGGCCATAAGGAGCCTTTTGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAGAAGTTGTTCTTGATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGGGGAAAGCACCGAACAGGTTGCTTGGTAGGATGCTATAGAAAATTGCAAAAATGGTGCTTGTCATCCGTCTTTGATGAATACCAACGCTTTGCAGCCGCCAAAGCAAGAGTTTCAGATCAGAGTTTGTGA

Predicted protein sequences of Glyma14g05400

Limit To All Plant Sequences

>Glyma14g05400.3   sequence type=predicted peptide   gene model=Glyma14g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLAAELQRTHHRHQRQRQQQDTTPMCRQIQLTISDHTVAGDAVADDGEDLFIPPLNFAMVDNGIFRSGFPEPANFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLFQFGIEGHKEPFVNIPEDTIREALEVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSMKHLPIPFSCLKRKR*

>Glyma14g05400.4   sequence type=predicted peptide   gene model=Glyma14g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLAAELQRTHHRHQRQRQQQDTTPMCRQIQLTISDHTVAGDAVADDGEDLFIPPLNFAMVDNGIFRSGFPEPANFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLFQFGIEGHKEPFVNIPEDTIREALEVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSMKHLPIPFSCLKR*

>Glyma14g05400.5   sequence type=predicted peptide   gene model=Glyma14g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLAAELQRTHHRHQRQRQQQDTTPMCRQIQLTISDHTVAGDAVADDGEDLFIPPLNFAMVDNGIFRSGFPEPANFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLFQFGIEGHKEPFVNIPEDTIREALEVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQSL*

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