Glyma14g05390 - SoyBase

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Report for Sequence Feature Glyma14g05390

Feature Type:	gene_model
Chromosome:	Gm14
Start:	3825605
stop:	3827583
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g05390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05010	AT	Annotation by Michelle Graham. TAIR10: ethylene-forming enzyme \| chr1:1431419-1432695 REVERSE LENGTH=323	SoyBase	E_val: 0	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009595	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0043900	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0071398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to fatty acid	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009815	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-aminocyclopropane-1-carboxylate oxidase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_I1M7I2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7I2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8W3Y3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylic acid oxidase n=1 Tax=Phaseolus lunatus RepID=Q8W3Y3_PHALU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g05390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g05390 not represented in the dataset	Glyma14g05390 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g05390

Paralog	Evidence	Comments
Glyma02g43560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g05390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g049500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g05390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g05390

Limit To All Plant Sequences

>Glyma14g05390.2   sequence type=transcript   gene model=Glyma14g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCCTAGCAAACTCTAATCTGCACAGAGCAATACTGCAAAAGAGAAAGAGGCAGATAGAAAAAAGAGCTGAGTTTTGAGTTCAAAAGATGACTAACTTCCCAGTGATCAACTTGGAGAAGCTCAATGGTGAGGAGAGAAACGACACCATGGAGAAAATAAAGGATGCTTGTGAAAACTGGGGATTCTTTGAGCTGGTGAATCATGGCATACCCCATGACTTATTGGACACTGTGGAGAGGTTGACCAAAGAGCACTACAGGAAATGCATGGAAGAGAGGTTCAAGGAATTTATGGCAAGCAAAGGTCTAGATGCTGTCCAAACTGAGGTCAAGGACATGGATTGGGAGAGCACCTTCCACTTGCGTCACCTCCCTGAATCAAACATCTCAGAGATCCCTGATCTCATTGATGAGTACAGGAAAGTGATGAAGGATTTTGCTTTGAGGTTAGAGAAACTAGCAGAGCAGCTGTTGGACTTGTTGTGTGAGAATCTTGGCCTAGAGAAAGGGTACCTCAAGAAGGCTTTCTATGGATCAAGAGGACCAACTTTTGGCACCAAGGTTGCCAACTACCCTCCATGCCCCAACCCAGACCTAGTGAAGGGTCTTCGTCCCCACACCGATGCCGGTGGGATTGTCCTTCTCTTCCAGGATGACAAGGTCAGTGGCCTACAGCTTCTCAAAGATGGCCAGTGGGTTGATGTGCCCCCAATGCGCCACTCCATTGTTGTTAACATTGGTGATCAGCTTGAGGTAAATTTATTTCCTATTATTTTTAATATATGAATTTAATTAGACTATAATATAAAAGTTCTTTATTATCATTCAATCATAAATTATCATATATTCAAAAACTATTAACTCTTGTAATAATTGCTTTAAAAACGATAGCTAAGATTATTTTTAATCGGTCGATTTTAATATATATTGCTCGGTAGACATTTCTACAAACAATTTAGATGCAACAAAATTACTCATATCAAACACTACTGGGTGGGAAAACAGGTTATCACCAATGGTAAGTACAGGAGTGTGGAGCACCGTGTGATAGCACAAACTGATGGGACCAGAATGTCCATAGCCTCATTCTATAACCCTGGCAGTGATGCTGTCATCTACCCTGCTCCAGAATTGTTGGAGAAAGAGGCAGAGGAGAAAAGCCAGCTCTACCCTAAATTTGTGTTTGAAGACTACATGAAGCTCTATGCTAAGTTGAAGTTCCAGGCCAAGGAGCCAAGATTTGAAGCCTTTAAAGCATCAAATTTTGGTCCAATTGCAACTGCTTAAATATTTTTACTATACACCATGTTTGCTTTGGGAGGAGTGTAACAAGTACCTGATGCGCATGTGTTTAGTAAAAGAATATAATAGCATTACTACTATTATATTTGTTATGTGTCTATTTGATTTCACATCCATTCTATTAAGAAATTAATTTTGAGTTTAGAATGAATAGTGAGCTAGAAATAGTTTTAAGTCATT

>Glyma14g05390.3   sequence type=transcript   gene model=Glyma14g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTACAAGATTCTAACATGAGGTAATGGTGCAGGAAAGTGATGAAGGATTTTGCTTTGAGGTTAGAGAAACTAGCAGAGCAGCTGTTGGACTTGTTGTGTGAGAATCTTGGCCTAGAGAAAGGGTACCTCAAGAAGGCTTTCTATGGATCAAGAGGACCAACTTTTGGCACCAAGGTTGCCAACTACCCTCCATGCCCCAACCCAGACCTAGTGAAGGGTCTTCGTCCCCACACCGATGCCGGTGGGATTGTCCTTCTCTTCCAGGATGACAAGGTCAGTGGCCTACAGCTTCTCAAAGATGGCCAGTGGGTTGATGTGCCCCCAATGCGCCACTCCATTGTTGTTAACATTGGTGATCAGCTTGAGGTTATCACCAATGGTAAGTACAGGAGTGTGGAGCACCGTGTGATAGCACAAACTGATGGGACCAGAATGTCCATAGCCTCATTCTATAACCCTGGCAGTGATGCTGTCATCTACCCTGCTCCAGAATTGTTGGAGAAAGAGGCAGAGGAGAAAAGCCAGCTCTACCCTAAATTTGTGTTTGAAGACTACATGAAGCTCTATGCTAAGTTGAAGTTCCAGGCCAAGGAGCCAAGATTTGAAGCCTTTAAAGCATCAAATTTTGGTCCAATTGCAACTGCTTAAATATTTTTACTATACACCATGTTTGCTTTGGGAGGAGTGTAACAAGTACCTGATGCGCATGTGTTTAGTAAAAGAATATAATAGCATTACTACTATTATATTTGTTATGTGTCTATTTGATTTCACATCCATTCTATTAAGAAATTAATTTTGAGTTTAGAATGAATAGTGAGCTAGAAATAGTTTTAAGTCATT

>Glyma14g05390.4   sequence type=transcript   gene model=Glyma14g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCACAGAGCAATACTGCAAAAGAGAAAGAGGCAGATAGAAAAAAGAGCTGAGTTTTGAGTTCAAAAGATGACTAACTTCCCAGTGATCAACTTGGAGAAGCTCAATGGTGAGGAGAGAAACGACACCATGGAGAAAATAAAGGATGCTTGTGAAAACTGGGGATTCTTTGAGCTGGTGAATCATGGCATACCCCATGACTTATTGGACACTGTGGAGAGGTTGACCAAAGAGCACTACAGGAAATGCATGGAAGAGAGGTTCAAGGAATTTATGGCAAGCAAAGGTCTAGATGCTGTCCAAACTGAGGTCAAGGACATGGATTGGGAGAGCACCTTCCACTTGCGTCACCTCCCTGAATCAAACATCTCAGAGATCCCTGATCTCATTGATGAGTACAGGTTACAATAAAACAAAACATTTATAACATTACACAATATTGCATGTGATGTGGATGACATGCTGTATTTTACAAATACAAGTTAATTAGCACAAAGTCCCAAATAACTGACACAGAATTTGCCCCTTGATTTTGACTTGACAAAATGGAT

Coding sequences of Glyma14g05390

Limit To All Plant Sequences

>Glyma14g05390.1   sequence type=CDS   gene model=Glyma14g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTAACTTCCCAGTGATCAACTTGGAGAAGCTCAATGGTGAGGAGAGAAACGACACCATGGAGAAAATAAAGGATGCTTGTGAAAACTGGGGATTCTTTGAGCTGGTGAATCATGGCATACCCCATGACTTATTGGACACTGTGGAGAGGTTGACCAAAGAGCACTACAGGAAATGCATGGAAGAGAGGTTCAAGGAATTTATGGCAAGCAAAGGTCTAGATGCTGTCCAAACTGAGGTCAAGGACATGGATTGGGAGAGCACCTTCCACTTGCGTCACCTCCCTGAATCAAACATCTCAGAGATCCCTGATCTCATTGATGAGTACAGGAAAGTGATGAAGGATTTTGCTTTGAGGTTAGAGAAACTAGCAGAGCAGCTGTTGGACTTGTTGTGTGAGAATCTTGGCCTAGAGAAAGGGTACCTCAAGAAGGCTTTCTATGGATCAAGAGGACCAACTTTTGGCACCAAGGTTGCCAACTACCCTCCATGCCCCAACCCAGACCTAGTGAAGGGTCTTCGTCCCCACACCGATGCCGGTGGGATTGTCCTTCTCTTCCAGGATGACAAGGTCAGTGGCCTACAGCTTCTCAAAGATGGCCAGTGGGTTGATGTGCCCCCAATGCGCCACTCCATTGTTGTTAACATTGGTGATCAGCTTGAGGTTATCACCAATGGTAAGTACAGGAGTGTGGAGCACCGTGTGATAGCACAAACTGATGGGACCAGAATGTCCATAGCCTCATTCTATAACCCTGGCAGTGATGCTGTCATCTACCCTGCTCCAGAATTGTTGGAGAAAGAGGCAGAGGAGAAAAGCCAGCTCTACCCTAAATTTGTGTTTGAAGACTACATGAAGCTCTATGCTAAGTTGAAGTTCCAGGCCAAGGAGCCAAGATTTGAAGCCTTTAAAGCATCAAATTTTGGTCCAATTGCAACTGCTTAA

>Glyma14g05390.2   sequence type=CDS   gene model=Glyma14g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTAACTTCCCAGTGATCAACTTGGAGAAGCTCAATGGTGAGGAGAGAAACGACACCATGGAGAAAATAAAGGATGCTTGTGAAAACTGGGGATTCTTTGAGCTGGTGAATCATGGCATACCCCATGACTTATTGGACACTGTGGAGAGGTTGACCAAAGAGCACTACAGGAAATGCATGGAAGAGAGGTTCAAGGAATTTATGGCAAGCAAAGGTCTAGATGCTGTCCAAACTGAGGTCAAGGACATGGATTGGGAGAGCACCTTCCACTTGCGTCACCTCCCTGAATCAAACATCTCAGAGATCCCTGATCTCATTGATGAGTACAGGAAAGTGATGAAGGATTTTGCTTTGAGGTTAGAGAAACTAGCAGAGCAGCTGTTGGACTTGTTGTGTGAGAATCTTGGCCTAGAGAAAGGGTACCTCAAGAAGGCTTTCTATGGATCAAGAGGACCAACTTTTGGCACCAAGGTTGCCAACTACCCTCCATGCCCCAACCCAGACCTAGTGAAGGGTCTTCGTCCCCACACCGATGCCGGTGGGATTGTCCTTCTCTTCCAGGATGACAAGGTCAGTGGCCTACAGCTTCTCAAAGATGGCCAGTGGGTTGATGTGCCCCCAATGCGCCACTCCATTGTTGTTAACATTGGTGATCAGCTTGAGGTAAATTTATTTCCTATTATTTTTAATATATGA

>Glyma14g05390.3   sequence type=CDS   gene model=Glyma14g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGATTTTGCTTTGAGGTTAGAGAAACTAGCAGAGCAGCTGTTGGACTTGTTGTGTGAGAATCTTGGCCTAGAGAAAGGGTACCTCAAGAAGGCTTTCTATGGATCAAGAGGACCAACTTTTGGCACCAAGGTTGCCAACTACCCTCCATGCCCCAACCCAGACCTAGTGAAGGGTCTTCGTCCCCACACCGATGCCGGTGGGATTGTCCTTCTCTTCCAGGATGACAAGGTCAGTGGCCTACAGCTTCTCAAAGATGGCCAGTGGGTTGATGTGCCCCCAATGCGCCACTCCATTGTTGTTAACATTGGTGATCAGCTTGAGGTTATCACCAATGGTAAGTACAGGAGTGTGGAGCACCGTGTGATAGCACAAACTGATGGGACCAGAATGTCCATAGCCTCATTCTATAACCCTGGCAGTGATGCTGTCATCTACCCTGCTCCAGAATTGTTGGAGAAAGAGGCAGAGGAGAAAAGCCAGCTCTACCCTAAATTTGTGTTTGAAGACTACATGAAGCTCTATGCTAAGTTGAAGTTCCAGGCCAAGGAGCCAAGATTTGAAGCCTTTAAAGCATCAAATTTTGGTCCAATTGCAACTGCTTAA

>Glyma14g05390.4   sequence type=CDS   gene model=Glyma14g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTAACTTCCCAGTGATCAACTTGGAGAAGCTCAATGGTGAGGAGAGAAACGACACCATGGAGAAAATAAAGGATGCTTGTGAAAACTGGGGATTCTTTGAGCTGGTGAATCATGGCATACCCCATGACTTATTGGACACTGTGGAGAGGTTGACCAAAGAGCACTACAGGAAATGCATGGAAGAGAGGTTCAAGGAATTTATGGCAAGCAAAGGTCTAGATGCTGTCCAAACTGAGGTCAAGGACATGGATTGGGAGAGCACCTTCCACTTGCGTCACCTCCCTGAATCAAACATCTCAGAGATCCCTGATCTCATTGATGAGTACAGGTTACAATAA

Predicted protein sequences of Glyma14g05390

Limit To All Plant Sequences

>Glyma14g05390.1   sequence type=predicted peptide   gene model=Glyma14g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNFPVINLEKLNGEERNDTMEKIKDACENWGFFELVNHGIPHDLLDTVERLTKEHYRKCMEERFKEFMASKGLDAVQTEVKDMDWESTFHLRHLPESNISEIPDLIDEYRKVMKDFALRLEKLAEQLLDLLCENLGLEKGYLKKAFYGSRGPTFGTKVANYPPCPNPDLVKGLRPHTDAGGIVLLFQDDKVSGLQLLKDGQWVDVPPMRHSIVVNIGDQLEVITNGKYRSVEHRVIAQTDGTRMSIASFYNPGSDAVIYPAPELLEKEAEEKSQLYPKFVFEDYMKLYAKLKFQAKEPRFEAFKASNFGPIATA*

>Glyma14g05390.2   sequence type=predicted peptide   gene model=Glyma14g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNFPVINLEKLNGEERNDTMEKIKDACENWGFFELVNHGIPHDLLDTVERLTKEHYRKCMEERFKEFMASKGLDAVQTEVKDMDWESTFHLRHLPESNISEIPDLIDEYRKVMKDFALRLEKLAEQLLDLLCENLGLEKGYLKKAFYGSRGPTFGTKVANYPPCPNPDLVKGLRPHTDAGGIVLLFQDDKVSGLQLLKDGQWVDVPPMRHSIVVNIGDQLEVNLFPIIFNI*

>Glyma14g05390.3   sequence type=predicted peptide   gene model=Glyma14g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDFALRLEKLAEQLLDLLCENLGLEKGYLKKAFYGSRGPTFGTKVANYPPCPNPDLVKGLRPHTDAGGIVLLFQDDKVSGLQLLKDGQWVDVPPMRHSIVVNIGDQLEVITNGKYRSVEHRVIAQTDGTRMSIASFYNPGSDAVIYPAPELLEKEAEEKSQLYPKFVFEDYMKLYAKLKFQAKEPRFEAFKASNFGPIATA*

>Glyma14g05390.4   sequence type=predicted peptide   gene model=Glyma14g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNFPVINLEKLNGEERNDTMEKIKDACENWGFFELVNHGIPHDLLDTVERLTKEHYRKCMEERFKEFMASKGLDAVQTEVKDMDWESTFHLRHLPESNISEIPDLIDEYRLQ*

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