Glyma14g05340 - SoyBase

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Report for Sequence Feature Glyma14g05340

Feature Type:	gene_model
Chromosome:	Gm14
Start:	3775712
stop:	3779542
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g05340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G47810	AT	Annotation by Michelle Graham. TAIR10: Calcineurin-like metallo-phosphoesterase superfamily protein \| chr3:17637256-17639017 REVERSE LENGTH=190	SoyBase	E_val: 1.00E-122	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0008333	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosome to lysosome transport	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016197	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosomal transport	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005771	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: multivesicular body	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030904	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: retromer complex	SoyBase	N/A	ISS
GO:0043231	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
KOG3325	KOG	Membrane coat complex Retromer, subunit VPS29/PEP11	JGI		ISS
PTHR11124	Panther	VACUOLAR SORTING PROTEIN VPS29	JGI		ISS
UniRef100_C6SYA3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYA3_SOYBN	SoyBase	E_val: 2.00E-136	ISS
UniRef100_G7J7A8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting n=1 Tax=Medicago truncatula RepID=G7J7A8_MEDTR	SoyBase	E_val: 2.00E-131	ISS

Expression Patterns of Glyma14g05340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g05340 not represented in the dataset	Glyma14g05340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g05340

Paralog	Evidence	Comments
Glyma02g43610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g05340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g048800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g05340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g05340

Limit To All Plant Sequences

>Glyma14g05340.2   sequence type=transcript   gene model=Glyma14g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAATGAACAGAATGAAATTGTGAATCGACGACGTATTTTGGTGCGTGCAGGTCCCGGTGTTAGAATTGGGGTTTCCGTTTCGATTGTACCTACCGGCCAACTTAGGGTGCAGTCACTCTCGATCTCACCGATCACCAACGTGCCTTCTTCTCCTCAGGTTCCCTTAGTCAACTTTCGGTTTTTTGATTGTTGAGGATGGTGCTGGTTTTAGCCCTGGGGGATTTGCACATACCCCACAGGGCACCTGATCTTCCTGCAAAGTTCAAATCCATGCTTGTCCCCGGCAAGATCCAACACATTATTTGTACTGGAAATTTGTGTATTAAAACTCTTTGTCCAGACTTGCATATAACTCGTGGTGAGTATGATGAAGAGACGAAATATCCGGAGACCAAAACACTAACCATTGGCCAATTTAAGCTGGGACTATGCCATGGCCATCAGGTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTTGATGTAGACATCCTTGTCACAGGTCACACCCATCAATTTACAGCTTACAAACACGAGGGGGGTGTGGTTATAAATCCAGGTTCTGCAACCGGTGCCTACAGCAGCATCACTTATGATGTGAACCCAAGTTTTGTCCTTATGGACATCGATGGTCTGCGAGTTGTGGTTTATGTATACGAACTTATTGATGGAGAGGTTAAGGTTGACAAGATTGATTTTAAGAAATCATCCACAAGCCACTCTGCTCATTAAACACTGGGATTTTGGTCTACTCTCTTTTCTCTTTCTCTTATTTGGCTGTTCAGTTTTCTTTTTACTCCTTCAAACTTTTCAAGGGTACTGTTTTTAGTTTTATTTTGCTTTGTATGTACACTTGTATTTGGCCATATCATAGGATTCTTAGGATTTGGTTAATATGTGATCTGCGCCAAACGTAACGACTGATTGATCAGCAATGGCTGTGTATTACTACTCCTTTTACAAGTTGCCCAGAGATGATATGCAGCAAAAAGAAAATTTTATTGTAAA

Coding sequences of Glyma14g05340

Limit To All Plant Sequences

>Glyma14g05340.1   sequence type=CDS   gene model=Glyma14g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTGGTTTTAGCCCTGGGGGATTTGCACATACCCCACAGGGCACCTGATCTTCCTGCAAAGTTCAAATCCATGCTTGTCCCCGGCAAGATCCAACACATTATTTGTACTGGAAATTTGTGTATTAAAGAAATTCGTGACTACTTAAAGACTCTTTGTCCAGACTTGCATATAACTCGTGGTGAGTATGATGAAGAGACGAAATATCCGGAGACCAAAACACTAACCATTGGCCAATTTAAGCTGGGACTATGCCATGGCCATCAGGTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTTGATGTAGACATCCTTGTCACAGGTCACACCCATCAATTTACAGCTTACAAACACGAGGGGGGTGTGGTTATAAATCCAGGTTCTGCAACCGGTGCCTACAGCAGCATCACTTATGATGTGAACCCAAGTTTTGTCCTTATGGACATCGATGGTCTGCGAGTTGTGGTTTATGTATACGAACTTATTGATGGAGAGGTTAAGGTTGACAAGATTGATTTTAAGAAATCATCCACAAGCCACTCTGCTCATTAA

>Glyma14g05340.2   sequence type=CDS   gene model=Glyma14g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTGGTTTTAGCCCTGGGGGATTTGCACATACCCCACAGGGCACCTGATCTTCCTGCAAAGTTCAAATCCATGCTTGTCCCCGGCAAGATCCAACACATTATTTGTACTGGAAATTTGTGTATTAAAACTCTTTGTCCAGACTTGCATATAACTCGTGGTGAGTATGATGAAGAGACGAAATATCCGGAGACCAAAACACTAACCATTGGCCAATTTAAGCTGGGACTATGCCATGGCCATCAGGTTATTCCATGGGGAGACCTAGACTCGCTGGCAATGCTACAGAGGCAGCTTGATGTAGACATCCTTGTCACAGGTCACACCCATCAATTTACAGCTTACAAACACGAGGGGGGTGTGGTTATAAATCCAGGTTCTGCAACCGGTGCCTACAGCAGCATCACTTATGATGTGAACCCAAGTTTTGTCCTTATGGACATCGATGGTCTGCGAGTTGTGGTTTATGTATACGAACTTATTGATGGAGAGGTTAAGGTTGACAAGATTGATTTTAAGAAATCATCCACAAGCCACTCTGCTCATTAA

Predicted protein sequences of Glyma14g05340

Limit To All Plant Sequences

>Glyma14g05340.1   sequence type=predicted peptide   gene model=Glyma14g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLVLALGDLHIPHRAPDLPAKFKSMLVPGKIQHIICTGNLCIKEIRDYLKTLCPDLHITRGEYDEETKYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKSSTSHSAH*

>Glyma14g05340.2   sequence type=predicted peptide   gene model=Glyma14g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLVLALGDLHIPHRAPDLPAKFKSMLVPGKIQHIICTGNLCIKTLCPDLHITRGEYDEETKYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKSSTSHSAH*

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