Glyma14g05160 - SoyBase

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Report for Sequence Feature Glyma14g05160

Feature Type:	gene_model
Chromosome:	Gm14
Start:	3576252
stop:	3579031
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g05160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G55140	AT	Annotation by Michelle Graham. TAIR10: ribosomal protein L30 family protein \| chr5:22381370-22381787 FORWARD LENGTH=109	SoyBase	E_val: 6.00E-48	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0015934	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PF00327	PFAM	Ribosomal protein L30p/L7e	JGI		ISS
UniRef100_B9SH53	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Structural constituent of ribosome, putative n=1 Tax=Ricinus communis RepID=B9SH53_RICCO	SoyBase	E_val: 8.00E-58	ISS
UniRef100_C6T0H3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T0H3_SOYBN	SoyBase	E_val: 6.00E-72	ISS

Expression Patterns of Glyma14g05160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g05160 not represented in the dataset	Glyma14g05160 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g05160

Paralog	Evidence	Comments
Glyma02g43750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g05160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g047100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g05160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g05160

Limit To All Plant Sequences

>Glyma14g05160.4   sequence type=transcript   gene model=Glyma14g05160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACTGTGCGTTTTGTTGGTTGGGTGCGTTAGGGGTTTCTTATTTTTTATCCCAATCACTTCCGTCAGTGGTTCCTGCCCATAACCTTTTCGGGTGATTGTTCTTCTTCGCTCACCCACGCACGCGTTACGGCATGAATGCGTTCAAGGCATATAAGGCCTGTGTGCCAATTGCTTGGAGCCCCAATATCTATATAACTCTAGTTAGGGGTATTCCGGGGACCAGGAGGCTCCATAGGCGCACTTTGGAAGCACTTCGCTTGCGCAAATGCAATCGAACTGTCATGCGATGGAACACACCTACAGTTAGGGGAATGCTCCAACAGGTCAAGAGGTTAGTTGTTATCGAGACAGAGGAAATGTACAAGGCACGCAAGCAGAAGGAGGAAGCACACAGAGCTCTACGGCCTCCGTTGGTCATAAGCCACAAGCCTCCCTCGGTTACTGATGCTTTATAAAGTCTTCTGCGTTCTTAAAGATATTATCTTCTTGCTACTAAAACTATCTAATGCCATTGTTTAAAGCTTTGGTCTCAAATGGACTAAATTTTGCTTTCAAGAACATGTCATAGTTTGATTCTATGATTCTGTAGTGTTTTCTACTGATAACATTAGTCAAATTCAGGCCTCTGCTCATGAAACCTGGCTAGTAGCAAGTGTTCATTTATTTATATTCTTTAGTTTGGGAATATTTATAATTTATTCCATAATTGCCTTTTCTCTTTTGGAAACAACTCACACTGTCGTTTGCCCTTTTTATATCTGTAAATACTTAATAATACATTACAATTGTCCTCGTTAAATGAGGTCGACAAAACACCCAAAAATTAACAAATTTGGAGCACAATGTTTTGTTCTTACACACTATATATTGGGCCACACAAAATGAGATTTTAAGACTATATCTTATGCTTCTTCCTTTCCATCAACTCCAACTTTCACATCATTTGCACTCACAAGCTCTTTTTCTGCATCGTCATTAGGCTTTATGTTGTGCTGAACTTTGTACTGATGCCTCATTGCTAATACAAGAAAAAGTATGAAATTCAGTAGTCCTAGCACTGCGAGCAACCAATAGAAGTAATCTAACCTGCCCTTGTTCAGATTGCTCCTTAGCCATCTTTTCTTACTTGCTTTGTCCACAATTGCCACCAATAAGCTACTGACAAAATAACCCATTGATAGTGTAGATAGGAAAAGTCCAGTGCTCATAGATTTCATTCTCTCTGGTGCCTCCCTAATGAAAAATTCTAGTTGTCCAACATAGGCAAATGCTTCCCCAGCACCCACCAGAAAAAATTGAGGGACCAGCCAAAAGGCGCTTATGGTATTATTTTTTACTGCATTCGCCCTCCTTTCTTTCTCAACAATTGCAGCAACTGCCATGGCAACGCTGGAGAAAACGAGTCCAATTCCAACCCTCTGGAGACTTGTGAGCCCTTGGGCATTGTGGGTCAGTTTCCGAGCTAAGGGCACAGTGAGTTTCTCATTTAGGGAAGTAAAGAGGAGAATGGTAATGATGAGAAAAGCTGATAGAGATCCTGCTGGGACAACTAGAGACCCAACTTTTCGATTCATGAATGTAGCTTGCTCAATGGTGAAGGTATTCATTTGAGAATAGATTGTCCAGAAGAGGATACATGTAGACCAAATAGGAAGGAGCTTGATTACCATTTTAACCTCCTCAACCTGAGTCACTGTGGAAACTATCCAAGGGTTTTCCCTGTTTTCCTCCTTTGAGCAGTTCTCATCTAGGATTGCAGCTTTGTCAAGGAACCTGTC

Coding sequences of Glyma14g05160

Limit To All Plant Sequences

>Glyma14g05160.3   sequence type=CDS   gene model=Glyma14g05160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCGTTCAAGGCATATAAGGCCTGTGTGCCAATTGCTTGGAGCCCCAATATCTATATAACTCTAGTTAGGGGTATTCCGGGGACCAGGAGGCTCCATAGGCGCACTTTGGAAGCACTTCGCTTGCGCAAATGCAATCGAACTGTCATGCGATGGAACACACCTACAGTTAGGGGAATGCTCCAACAGGTCAAGAGGTTAGTTGTTATCGAGACAGAGGAAATGTACAAGGCACGCAAGCAGAAGGAGGAAGCACACAGAGCTCTACGGCCTCCGTTGGTCATAAGCCACAAGCCTCCCTCGGTTACTGATGCTTTATAA

>Glyma14g05160.4   sequence type=CDS   gene model=Glyma14g05160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCGTTCAAGGCATATAAGGCCTGTGTGCCAATTGCTTGGAGCCCCAATATCTATATAACTCTAGTTAGGGGTATTCCGGGGACCAGGAGGCTCCATAGGCGCACTTTGGAAGCACTTCGCTTGCGCAAATGCAATCGAACTGTCATGCGATGGAACACACCTACAGTTAGGGGAATGCTCCAACAGGTCAAGAGGTTAGTTGTTATCGAGACAGAGGAAATGTACAAGGCACGCAAGCAGAAGGAGGAAGCACACAGAGCTCTACGGCCTCCGTTGGTCATAAGCCACAAGCCTCCCTCGGTTACTGATGCTTTATAA

Predicted protein sequences of Glyma14g05160

Limit To All Plant Sequences

>Glyma14g05160.3   sequence type=predicted peptide   gene model=Glyma14g05160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNAFKAYKACVPIAWSPNIYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKQKEEAHRALRPPLVISHKPPSVTDAL*

>Glyma14g05160.4   sequence type=predicted peptide   gene model=Glyma14g05160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNAFKAYKACVPIAWSPNIYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKQKEEAHRALRPPLVISHKPPSVTDAL*

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