SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04580 | AT | Annotation by Michelle Graham. TAIR10: aldehyde oxidase 4 | chr1:1252212-1257510 REVERSE LENGTH=1337 | SoyBase | E_val: 0 | ISS |
| GO:0019760 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004031 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aldehyde oxidase activity | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016614 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors | SoyBase | N/A | ISS |
| GO:0018479 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: benzaldehyde dehydrogenase (NAD+) activity | SoyBase | N/A | ISS |
| GO:0018488 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aryl-aldehyde oxidase activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| GO:0051536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding | SoyBase | N/A | ISS |
| GO:0051537 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding | SoyBase | N/A | ISS |
| KOG0430 | KOG | Xanthine dehydrogenase | JGI | ISS | |
| PTHR11908 | Panther | XANTHINE DEHYDROGENASE | JGI | ISS | |
| PTHR11908:SF15 | Panther | ALDEHYDE OXIDASE | JGI | ISS | |
| PF00111 | PFAM | 2Fe-2S iron-sulfur cluster binding domain | JGI | ISS | |
| PF00941 | PFAM | FAD binding domain in molybdopterin dehydrogenase | JGI | ISS | |
| PF01315 | PFAM | Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain | JGI | ISS | |
| PF01799 | PFAM | [2Fe-2S] binding domain | JGI | ISS | |
| PF02738 | PFAM | Molybdopterin-binding domain of aldehyde dehydrogenase | JGI | ISS | |
| PF03450 | PFAM | CO dehydrogenase flavoprotein C-terminal domain | JGI | ISS | |
| UniRef100_G7KHF8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aldehyde oxidase n=1 Tax=Medicago truncatula RepID=G7KHF8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M7D9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7D9_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma14g04950 not represented in the dataset |
Glyma14g04950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g43993 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g045100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g04950.1 sequence type=CDS gene model=Glyma14g04950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACTGGAGAAGACACCAACAAGTTTGGTTTTTGGTGTTAATGGTGAGAGGTTTGAGCTCTCCCACGTTGACCCATCAACCACTTTGCTCCAATTCTTACGCACTCGCACTCGTTTCAAGAGTGTCAAGCTCGGTTGTGGTGAAGGGGGTTGTGGCGCTTGTGTAGTTTTAATCTCCAAATACGATCCTGTGCTTGACCAAGTTGAGGATTTTACAGCAAGCTCTTGTCTCACACTACTTTGCAGCATACATGGCTGTTCAATAACAACTAGTGAAGGCATTGGAAATTCTAAAGAAGGATTCCACCCAATACATAAAAGATTTGCAGGATTCCATGCCACTCAATGTGGCTTTTGTACTCCTGGAATGTGTGTTTCCCTCTTTGGAACTCTTGTCAATGCTGAAAAGACTACTTGTCCAGAGCCACCTGCTGGGTTCTCAAAAGTAACTGTTGCTGTGGCCGAAAAGGCAATTGCAGGGAATCTTTGTCGCTGTACTGGGTATCGACCGATTGCTGATGTCTGCAAAAGCTTTGCAGCTGACGTTGATATGGAGGATTTGGGGTTCAACTCTTTCTGGAGAAAAGGTGATAACAAGGACTCAAAGCTTAGTAGGTTGCCTCAATATGACCATAATCAAACGAATAGTAGATTTCCCTTGTTTTTGAAGGAAGTCAAGCATGATGTGTTCTTAGCTTCCGAGAAGCACAGTTGGCACAGACCTATTAGTCTAATGGAGCTTCAGAGCTTATTGAAATTAAACCATTGTAATGGAACCCGGATAAAAATTGTTGTTAGTAATACAGGTATGGGATATTACAAAGAAAAGGAAGCCTATGATAAGTACATTGATCTAAGGGGAATTTCTGAGCTTTCAAAGATCAGAAAGGATCAAACAGGGATTGAAATTGGAGCAGCAGTGACAATATCTAAAGCTATTGAAGCACTGAAGGAAGAGAGCAGAAGTGACTTTCTCTCAGATTATGTGATGATACTTGAAAAGATTGCTGACCATATGAGCAAAGTTGCCTCAGGATATATTCGGAACACAGCCAGTGTAGGTGGAAATTTAGTTATGGCACAAAAGAATAATTTTCCCTCGGATATTGCTACAATACTTCTTGCTGTAGATGCAATGGTTCACATAATGACTGGTACACAATTTGAGTGCCTAACATTGGAGGAATTTCTCGAAAGACCGCCATTAGGTTTGGAAAGTGTGCTTTTGAGCATTAAAATTCCTAGTTTGGAACTCAATAAAACTGAATCATCAGAACCAAGAAGTAGATTCCTTTTTGAAACTTACCGAGCTTCTCCTCGACCCCTTGGAAATGCCCTTCCCTACTTAAATGCTGCTTTCCTGGTTAAGGTGTCTCAATGCAAGGATTCTGGTGGAACTGTGATTGACACTTGTAGGTTCTCTTTTGGTGCTTATGGGAGTAAGCATGCAATCAGAGCAAAAAATGTTGAGGAGTTTTTAGCTGGAAAGCTTTTAAGTGCTAGCATTCTATACGATGCTGTCATCTTGGTTACAGCCACTATTGTACCTAAAGATGATACCTCAAAAACCACTTACCGTTCAAGTTTGGCAGCTGGTTTTATTTTTCAGTTCTTTAACCCACTTCTTGATGCTTCCGCAATAAACAATGGTTATTTTAATGGACATATTAATCTTCCTTATGCTAAGGATTTTGAGTTAAAAGAGAATCAGAAGCAGGTTCGTCATGACAAAGTTCCAACTTTACTGTCATCTGGTAAGCAAATCCTTGAAGCAGGCTGTGACTATCATCCTGTTGGTGAGCCAATTATGAAATCTGGAGCTGCACTACAAGCTTCAGGTGAGGTTGTGTTTGTGGATGACATTCCATCACCAGCAAATTGCTTACATGGAGCATATATTTATAGTGCAAAACCTTTAGCAAGGGTTAGGAGTATAAAACTCACACCGGAATTGCAATTGGATGGATTGAGGGATATCATTTCAATTAAAGACATTCCCAATGGTGGGGAAAACATTGGATCTAAGACTATATTTGGGGTTGAACCTCTCTTTGCTGAAGAGATAGCCAGATGTGTTGGTGAACGACTAGCCTTTGTGGTCGCAGATACTCAGAAACTTGCAGATATGGCTGCAAACTCAGCTGTTGTTGATTATGATACCAAAAATCTTGAACCACCTATTCTATCCGTTGAAGATGCTGTTGAAAGATCTAGCTTTTTTGAAGTTCCTCCTTTTCTTTATCCAAAACATGTTGGTGATATATCAAAAGGAATGGCTGAAGCAGATCACAAGATTCTTTCTGCTGAGTTGAAACTTGGGTCTCAATACTATTTCTATATGGAGACACAAACTGCACTTGCTGTTCCAGATGAAGACAATTGCATTACAGTTTACTCCTCAAACCAATGCCCTGAGTTTGCGCATTCTACTATAGCAAGATGCCTAGGAATTCCTGAAAATAATGTTCGTGTAATAACAAGAAGGGTTGGGGGTGGTTTTGGTGGAAAGGCCTTGAAAGCAATATCTGTTGCCACATCATGTGCACTGGCAGCACAGAAATTACAGCGCCCAGTTAGAATGTATCTAAATCGAAAGACAGATATGATAATAGCCGGAGGAAGGCATCCCATGAAGATAACTTACAGTGTTGGGTTTAGGAATGATGGTAAGATTACTGCACTAGAACTTCAGATATTGATCAATGCAGGGATATATGTGGATATAAGTGCAGTTATGCCACATCATATAGTTTGTGCACTTAAAAAGTACGACTGGGGTGCACTATCTTTTGATATAAAGGTATGCAGAACAAATCATCCTAATAGATCTGCAATGAGAGGCCCTGGGGAGGTTCAGGGATCATTTATTGCTGAAGCTATTATAGAAAATGTTGCAGCTACACTTTCAATGGATGTAGATTCTGTCAGAAGCGTTAATCTTCACACATACAAAAGTCTTCAGTCATTCTATGAGTACTATCATGGTGAACCTTATGAGTATACCTTGCCTTCAATATGGAGTAAGTTGGCTGTTTCTGCAAACTATGACCAGAGAACTAAATTGGTGCAAAAGTTCAACAGGATTAACACCTGGAAGAAAAGGGGAATTTCTCGAGTACCAGCTGTGATTGAACTGACTCTAAGACCAACTCCTGGAAAAGTAAGTATTTTTGTAGACGGGTCTGTCGTTGTTGAAGTTGGAGGAATTGAAGTGGGTCAAGGTCTTTGGACAAAGGTGAAACAGATGGCTGCATATGCTCTGGGTGATATTCAATGTGATGGAACTGAAGGTCTTTTGGACAAAGTACGGGTTGTGCAATCTGATACGGTGAGCTTGACTCAAGGAGGCTTCACTGCAGGGAGCACTACATCAGAGTCAAGCTGCGAAGCAGTTAGGCTTTGCTGTAATATCTTGGTAGAGAGGCTAAAGCCTCTTAAGGAAAAGCTGCAGGAGGAAATGGACTCTATCAAATGGGAGACCCTTATTCTCCAGGCATACATGCAAGCTGTGAACTTATCAGCATCTTCATTTTATGTACCTAGTAATGATTCCATGGGTTACCTTAGTTATGGTGCTGCAGTAAGTGAGGTGGAAATAGATCTTCTGAATGGAGAAACCAGATTTTTGCAAACAGATATTATTTACGATTGTGGACAGAGTCTAAACCCTGCTGTGGATTTAGGACAGATTGAAGGAGCTTTTGTCCAGGGGTTGGGATTTTTCATGCTTGAAGAATACGAAACAAATCTTGATGGTTTGGTGTTGCAAGATGGCACTTGGAACTACAAAATCCCAACGATAGACACTATACCTAAACAGTTTAATGTTCAAATCCTCAACAGTGGGCATCACCAGAAACGTGTTCTCTCTTCAAAAGCTTCTGGTGAGCCACCATTACTTCTAGCAGCCTCCATTCACTGTGCCACAAGAGCAGCTGTAAAAGAGGCAAGGAAACAGCTTCTTTCATGGAGCAACCAAGATGAAGAAGATTCAACATTTCAGTTGGGGGTCCCTGCAACCATGCCTGTGGTCAAGGAACTCTGTGGACTGGACATTGTAGAAAGATACTTGAAATGGAAAATGGGGAAGGACATAATGGTGCTCACTTAA
>Glyma14g04950.1 sequence type=predicted peptide gene model=Glyma14g04950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELEKTPTSLVFGVNGERFELSHVDPSTTLLQFLRTRTRFKSVKLGCGEGGCGACVVLISKYDPVLDQVEDFTASSCLTLLCSIHGCSITTSEGIGNSKEGFHPIHKRFAGFHATQCGFCTPGMCVSLFGTLVNAEKTTCPEPPAGFSKVTVAVAEKAIAGNLCRCTGYRPIADVCKSFAADVDMEDLGFNSFWRKGDNKDSKLSRLPQYDHNQTNSRFPLFLKEVKHDVFLASEKHSWHRPISLMELQSLLKLNHCNGTRIKIVVSNTGMGYYKEKEAYDKYIDLRGISELSKIRKDQTGIEIGAAVTISKAIEALKEESRSDFLSDYVMILEKIADHMSKVASGYIRNTASVGGNLVMAQKNNFPSDIATILLAVDAMVHIMTGTQFECLTLEEFLERPPLGLESVLLSIKIPSLELNKTESSEPRSRFLFETYRASPRPLGNALPYLNAAFLVKVSQCKDSGGTVIDTCRFSFGAYGSKHAIRAKNVEEFLAGKLLSASILYDAVILVTATIVPKDDTSKTTYRSSLAAGFIFQFFNPLLDASAINNGYFNGHINLPYAKDFELKENQKQVRHDKVPTLLSSGKQILEAGCDYHPVGEPIMKSGAALQASGEVVFVDDIPSPANCLHGAYIYSAKPLARVRSIKLTPELQLDGLRDIISIKDIPNGGENIGSKTIFGVEPLFAEEIARCVGERLAFVVADTQKLADMAANSAVVDYDTKNLEPPILSVEDAVERSSFFEVPPFLYPKHVGDISKGMAEADHKILSAELKLGSQYYFYMETQTALAVPDEDNCITVYSSNQCPEFAHSTIARCLGIPENNVRVITRRVGGGFGGKALKAISVATSCALAAQKLQRPVRMYLNRKTDMIIAGGRHPMKITYSVGFRNDGKITALELQILINAGIYVDISAVMPHHIVCALKKYDWGALSFDIKVCRTNHPNRSAMRGPGEVQGSFIAEAIIENVAATLSMDVDSVRSVNLHTYKSLQSFYEYYHGEPYEYTLPSIWSKLAVSANYDQRTKLVQKFNRINTWKKRGISRVPAVIELTLRPTPGKVSIFVDGSVVVEVGGIEVGQGLWTKVKQMAAYALGDIQCDGTEGLLDKVRVVQSDTVSLTQGGFTAGSTTSESSCEAVRLCCNILVERLKPLKEKLQEEMDSIKWETLILQAYMQAVNLSASSFYVPSNDSMGYLSYGAAVSEVEIDLLNGETRFLQTDIIYDCGQSLNPAVDLGQIEGAFVQGLGFFMLEEYETNLDGLVLQDGTWNYKIPTIDTIPKQFNVQILNSGHHQKRVLSSKASGEPPLLLAASIHCATRAAVKEARKQLLSWSNQDEEDSTFQLGVPATMPVVKELCGLDIVERYLKWKMGKDIMVLT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
