SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20930 | AT | Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr5:7098213-7102970 FORWARD LENGTH=688 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0042802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: identical protein binding | SoyBase | N/A | ISS |
| KOG1151 | KOG | Tousled-like protein kinase | JGI | ISS | |
| PTHR22974 | Panther | MIXED LINEAGE PROTEIN KINASE | JGI | ISS | |
| PTHR22974:SF1 | Panther | TOUSLED-LIKE KINASE | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_G7KHC0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tousled-like kinase n=1 Tax=Medicago truncatula RepID=G7KHC0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233ACD3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233ACD3 related cluster n=1 Tax=unknown RepID=UPI000233ACD3 | SoyBase | E_val: 0 | ISS |
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Glyma14g04910 not represented in the dataset |
Glyma14g04910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g43950 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g044700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g04910.2 sequence type=transcript gene model=Glyma14g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TACATCTCGAAATGAGAAACCTTTCACTTTCTCACTTAATTAATTGCACCCATCTATTTTCACTATAAAAATATAGGATCCTCAAAGAAATTCAAAGCACCATTCTCATCTCAAAAGCAAATAGGTAAGAAAAAAACTATCATCATTCATCACTATAACACCTCTCTAGATTTAAAAAGCACAAATCTCACATCACATCACATTCAAACACATACTAAATCCAAATCATACAATATGTTTGTACTCCTTTTTTTATCCCCTCCCTTTTAACTTCTCACGTACTCTTCTCCCATGTCCCAAAATTTTTACCCATAGAAGCTTTTCTGAACAAAAACAACCCACAACAATTTCAAAATAACACATGCCCCAAAAGAAAAAAGCAGTCTTTATTACTCTCTTCTGTTATTGTAGTCATGCCTCCCTTCTTTCACAGGTCCAATATTCATTCTTCTTTCCCAAGCTTTTGATTCTTCCACCACTTTCCCAAACAACAAAACCCTAGATTTTCTTTTTCCAATCACTTAATTCTCTGAGTTCTTCACCCAATAGGCAAAAAATACTCAAAATCCCCCCTTTTTATTTTTCCTTTCAATCACTTCCCCTTCTAAATTCTCTGATTACCTGATTTATTCAACTGCTTCTGCCGTTTCCCCTTTGCATAAACAAACCCCAATTTCTTCACGTGGGTCTCTGAAATTTTTTCACCTTATCCTCTCTGATCACGAATGGTTTGCAGTTATAGCAACAATGTCAGATGACATGCTCATTCATTTCTCATCCAACTCATCCAACCAATCAGATCAGTCTCTGCCTACAAAGATTGCAAAGTTGGAAGCTCGCATGGTTGGTAAGGGTTCCTCCACGACTGCTCAGCAATCAGGTTGGTCCTCTGTGTCCGTTCCTTCTGCTGGGAAATTAGGTGGAGCTGCTGAAAATTTGGCTGAACCATCCACTTCCAGTGATTCTGATGATGATAATGGTGGGGAATTCTTAATACAAGCCAACACTCAGAAACGCCAAAAATTTCAAGAAGATGGCAGCGCAAGTGTTTTTGAACGTGTTGAGGTTGTTACTGATGCAAGGCAAATGAGTTTGGAGACCATGGAGACAAAAATTAATGTTGATGCGAATAGAAAGAAACATGGCCGTGGAAGAGGGAGTTCTGGTTCAGGTAGAGGCCGTGGTTCCAGAGTTACTGATCAGACCAAAACACAAATTTCTCCTCCAACAGTTTTGGCTTCAAATGGTCAGATTGAGAGTGTATACCATAAGGAGGACGTTGCATCTTTAGAAGCAAAAGTTGTTGCATTGGAGGAGGAATTGCGTAAATCAAAGCAAGAGACCGCTGATTATCAAAATCTTTATCGACAGCTAGAAAAGGAACTGAAGGAGCTGAATGATCATGAACAGCAAATGAAGCCTAAGAGAATGAAAATAATATCTGACTTACTGATATCTGTTTCAAAGGCTGAGAGACAAGAAGCAAGGTTGAAAGTACGGCAAGACTCATTGAGACTTGGGAATGTTGGTGTAATCAGAGCTGGAACTGTCATATCCGAGACCTGGGAAGATGGTCAAGCTTTAAAGGATCTGAATGCCCAGCTTAAACAACTAATAGAAACAAAGGAGGCAATCGAGCGGCAGCGCAAATTGTTTAAGAAAAAACAATCTGATAAGAGTGATGGAATAGATGCAGAGGCTGGATTACCAGAAGATATTCTAATTCATGATGAGATCTACAAGTCTCGATTAGCTAGCCTTAAAAGAGAAGAAGAAATTATTTTCCGGGAGAGGGAACGATATGAAATAGAGAAGGGGAGGTTAATTCGTGAAATGAAACGTATACGGGATGAAGATGGTTCACGGTTTAACAACTTTCAGATTCTAAATCATCGCTATGCCCTTCTTAACCTTCTTGGAAAGGGAGGATTCAGTGAGGTGTACAAGGCTTTCGACTTGGTAGAGCATAGATATGTTGCATGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGCTACATACGCCATGCAATTCGGGAGTATAATATTCACAAGACTCTTGTACATCGTCACATTGTTCGTTTATGGGACATTTTTGAGATTGATCAAAACACATTCTGCACTGTTCTAGAGCATTGTAGTGGGAAAGATCTTGATGCTGTCCTCAAAGCAACACCTGTATTACCTGAGAGGGAGGCTAAGGTCATCATAGTTCAAATTTTTCAAGGCCTTATTTACATGAATAAAAGAACACAGAAGATTATCCATTATGATTTGAAGCCTGGAAATGTTCTGTTTGATGAGCTTGGTGTTGCCAAAGTGACTGATTTTGGTCTTAGTAAGATAGTGGAGGATGATGTGGGATCCCAAGGTATGGAACTTACATCCCAAGGAGCTGGAACATATTGGTATTTACCTCCTGAATGCTTTGAGCTCAGCAAGACACCTCTTATATCATCAAAGGTTGATGTCTGGTCTGCTGGAATTTTGTATTATCAAATGCTCTTTGGCCGACGTCCTTTTGGGCACGATCAAACACAAGAGAGAATACTTCGCGAAGACACAATTATCAAGGCACGCAAAGTTGAATTTCCTTCTAGACCTACCATTTCTAATGAGGCAAAGGATTTTATTCGACGGTGTCTAACATATAACCAGGCCGAGAGACCAGATGTATTGACCATTGCTCAAGACCCATATCTCACTTTCTCAAAAAAGTAATGGGCTTCATTATCCAGACTCCACAGAGAAAGAATGGAGGATCTCATCTTCTAACTTCAGTTACTGAATCTCTTAAATTTTGTATAGGTTGTAAAGATTTAATCTTGTCAATGAGGCAGAGAGAGGGATTTCCCCATTCTGAAACAGAGTCCAGTTTATTTGCATGCATCACCTTTTGGTTCAAAATATGGGGGAGCAAATGGCATGTGGGTTTGATTTGACCTCAAAAAGGGCCAGGGAGTATAGGTACTCACTGGCAAGTGAGAAAGCTTGTGCTATTTTTTTAATACTCTTGCTCCCAAATATAGGATTTTAATGCATTTTGATTGGCTACTTTATCTTTTTTTTTTTTTCCACCAAGCTATTAATTTGTGGAGGGAGAGCTAATTTATTTTAAGGATGTTTGAAAG
>Glyma14g04910.1 sequence type=CDS gene model=Glyma14g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGATGACATGCTCATTCATTTCTCATCCAACTCATCCAACCAATCAGATCAGTCTCTGCCTACAAAGATTGCAAAGTTGGAAGCTCGCATGGTTGGTAAGGGTTCCTCCACGACTGCTCAGCAATCAGGTTGGTCCTCTGTGTCCGTTCCTTCTGCTGGGAAATTAGGTGGAGCTGCTGAAAATTTGGCTGAACCATCCACTTCCAGTGATTCTGATGATGATAATGGTGGGGAATTCTTAATACAAGCCAACACTCAGAAACGCCAAAAATTTCAAGAAGATGGCAGCGCAAGTGTTTTTGAACGTGTTGAGGTTGTTACTGATGCAAGGCAAATGAGTTTGGAGACCATGGAGACAAAAATTAATGTTGATGCGAATAGAAAGAAACATGGCCGTGGAAGAGGGAGTTCTGGTTCAGGTAGAGGCCGTGGTTCCAGAGTTACTGATCAGACCAAAACACAAATTTCTCCTCCAACAGTTTTGGCTTCAAATGGTCAGATTGAGAGTGTATACCATAAGGATGGTAGACCCAGTGATCAGTTTCATAGGAATAATTCTGCTTCACTAGAGGAGGACGTTGCATCTTTAGAAGCAAAAGTTGTTGCATTGGAGGAGGAATTGCGTAAATCAAAGCAAGAGACCGCTGATTATCAAAATCTTTATCGACAGCTAGAAAAGGAACTGAAGGAGCTGAATGATCATGAACAGCAAATGAAGCCTAAGAGAATGAAAATAATATCTGACTTACTGATATCTGTTTCAAAGGCTGAGAGACAAGAAGCAAGGTTGAAAGTACGGCAAGACTCATTGAGACTTGGGAATGTTGGTGTAATCAGAGCTGGAACTGTCATATCCGAGACCTGGGAAGATGGTCAAGCTTTAAAGGATCTGAATGCCCAGCTTAAACAACTAATAGAAACAAAGGAGGCAATCGAGCGGCAGCGCAAATTGTTTAAGAAAAAACAATCTGATAAGAGTGATGGAATAGATGCAGAGGCTGGATTACCAGAAGATATTCTAATTCATGATGAGATCTACAAGTCTCGATTAGCTAGCCTTAAAAGAGAAGAAGAAATTATTTTCCGGGAGAGGGAACGATATGAAATAGAGAAGGGGAGGTTAATTCGTGAAATGAAACGTATACGGGATGAAGATGGTTCACGGTTTAACAACTTTCAGATTCTAAATCATCGCTATGCCCTTCTTAACCTTCTTGGAAAGGGAGGATTCAGTGAGGTGTACAAGGCTTTCGACTTGGTAGAGCATAGATATGTTGCATGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGCTACATACGCCATGCAATTCGGGAGTATAATATTCACAAGACTCTTGTACATCGTCACATTGTTCGTTTATGGGACATTTTTGAGATTGATCAAAACACATTCTGCACTGTTCTAGAGCATTGTAGTGGGAAAGATCTTGATGCTGTCCTCAAAGCAACACCTGTATTACCTGAGAGGGAGGCTAAGGTCATCATAGTTCAAATTTTTCAAGGCCTTATTTACATGAATAAAAGAACACAGAAGATTATCCATTATGATTTGAAGCCTGGAAATGTTCTGTTTGATGAGCTTGGTGTTGCCAAAGTGACTGATTTTGGTCTTAGTAAGATAGTGGAGGATGATGTGGGATCCCAAGGTATGGAACTTACATCCCAAGGAGCTGGAACATATTGGTATTTACCTCCTGAATGCTTTGAGCTCAGCAAGACACCTCTTATATCATCAAAGGTTGATGTCTGGTCTGCTGGAATTTTGTATTATCAAATGCTCTTTGGCCGACGTCCTTTTGGGCACGATCAAACACAAGAGAGAATACTTCGCGAAGACACAATTATCAAGGCACGCAAAGTTGAATTTCCTTCTAGACCTACCATTTCTAATGAGGCAAAGGATTTTATTCGACGGTGTCTAACATATAACCAGGCCGAGAGACCAGATGTATTGACCATTGCTCAAGACCCATATCTCACTTTCTCAAAAAAGTAA >Glyma14g04910.2 sequence type=CDS gene model=Glyma14g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGATGACATGCTCATTCATTTCTCATCCAACTCATCCAACCAATCAGATCAGTCTCTGCCTACAAAGATTGCAAAGTTGGAAGCTCGCATGGTTGGTAAGGGTTCCTCCACGACTGCTCAGCAATCAGGTTGGTCCTCTGTGTCCGTTCCTTCTGCTGGGAAATTAGGTGGAGCTGCTGAAAATTTGGCTGAACCATCCACTTCCAGTGATTCTGATGATGATAATGGTGGGGAATTCTTAATACAAGCCAACACTCAGAAACGCCAAAAATTTCAAGAAGATGGCAGCGCAAGTGTTTTTGAACGTGTTGAGGTTGTTACTGATGCAAGGCAAATGAGTTTGGAGACCATGGAGACAAAAATTAATGTTGATGCGAATAGAAAGAAACATGGCCGTGGAAGAGGGAGTTCTGGTTCAGGTAGAGGCCGTGGTTCCAGAGTTACTGATCAGACCAAAACACAAATTTCTCCTCCAACAGTTTTGGCTTCAAATGGTCAGATTGAGAGTGTATACCATAAGGAGGACGTTGCATCTTTAGAAGCAAAAGTTGTTGCATTGGAGGAGGAATTGCGTAAATCAAAGCAAGAGACCGCTGATTATCAAAATCTTTATCGACAGCTAGAAAAGGAACTGAAGGAGCTGAATGATCATGAACAGCAAATGAAGCCTAAGAGAATGAAAATAATATCTGACTTACTGATATCTGTTTCAAAGGCTGAGAGACAAGAAGCAAGGTTGAAAGTACGGCAAGACTCATTGAGACTTGGGAATGTTGGTGTAATCAGAGCTGGAACTGTCATATCCGAGACCTGGGAAGATGGTCAAGCTTTAAAGGATCTGAATGCCCAGCTTAAACAACTAATAGAAACAAAGGAGGCAATCGAGCGGCAGCGCAAATTGTTTAAGAAAAAACAATCTGATAAGAGTGATGGAATAGATGCAGAGGCTGGATTACCAGAAGATATTCTAATTCATGATGAGATCTACAAGTCTCGATTAGCTAGCCTTAAAAGAGAAGAAGAAATTATTTTCCGGGAGAGGGAACGATATGAAATAGAGAAGGGGAGGTTAATTCGTGAAATGAAACGTATACGGGATGAAGATGGTTCACGGTTTAACAACTTTCAGATTCTAAATCATCGCTATGCCCTTCTTAACCTTCTTGGAAAGGGAGGATTCAGTGAGGTGTACAAGGCTTTCGACTTGGTAGAGCATAGATATGTTGCATGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGCTACATACGCCATGCAATTCGGGAGTATAATATTCACAAGACTCTTGTACATCGTCACATTGTTCGTTTATGGGACATTTTTGAGATTGATCAAAACACATTCTGCACTGTTCTAGAGCATTGTAGTGGGAAAGATCTTGATGCTGTCCTCAAAGCAACACCTGTATTACCTGAGAGGGAGGCTAAGGTCATCATAGTTCAAATTTTTCAAGGCCTTATTTACATGAATAAAAGAACACAGAAGATTATCCATTATGATTTGAAGCCTGGAAATGTTCTGTTTGATGAGCTTGGTGTTGCCAAAGTGACTGATTTTGGTCTTAGTAAGATAGTGGAGGATGATGTGGGATCCCAAGGTATGGAACTTACATCCCAAGGAGCTGGAACATATTGGTATTTACCTCCTGAATGCTTTGAGCTCAGCAAGACACCTCTTATATCATCAAAGGTTGATGTCTGGTCTGCTGGAATTTTGTATTATCAAATGCTCTTTGGCCGACGTCCTTTTGGGCACGATCAAACACAAGAGAGAATACTTCGCGAAGACACAATTATCAAGGCACGCAAAGTTGAATTTCCTTCTAGACCTACCATTTCTAATGAGGCAAAGGATTTTATTCGACGGTGTCTAACATATAACCAGGCCGAGAGACCAGATGTATTGACCATTGCTCAAGACCCATATCTCACTTTCTCAAAAAAGTAA
>Glyma14g04910.1 sequence type=predicted peptide gene model=Glyma14g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDDMLIHFSSNSSNQSDQSLPTKIAKLEARMVGKGSSTTAQQSGWSSVSVPSAGKLGGAAENLAEPSTSSDSDDDNGGEFLIQANTQKRQKFQEDGSASVFERVEVVTDARQMSLETMETKINVDANRKKHGRGRGSSGSGRGRGSRVTDQTKTQISPPTVLASNGQIESVYHKDGRPSDQFHRNNSASLEEDVASLEAKVVALEEELRKSKQETADYQNLYRQLEKELKELNDHEQQMKPKRMKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNAQLKQLIETKEAIERQRKLFKKKQSDKSDGIDAEAGLPEDILIHDEIYKSRLASLKREEEIIFRERERYEIEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDQNTFCTVLEHCSGKDLDAVLKATPVLPEREAKVIIVQIFQGLIYMNKRTQKIIHYDLKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILYYQMLFGRRPFGHDQTQERILREDTIIKARKVEFPSRPTISNEAKDFIRRCLTYNQAERPDVLTIAQDPYLTFSKK* >Glyma14g04910.2 sequence type=predicted peptide gene model=Glyma14g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDDMLIHFSSNSSNQSDQSLPTKIAKLEARMVGKGSSTTAQQSGWSSVSVPSAGKLGGAAENLAEPSTSSDSDDDNGGEFLIQANTQKRQKFQEDGSASVFERVEVVTDARQMSLETMETKINVDANRKKHGRGRGSSGSGRGRGSRVTDQTKTQISPPTVLASNGQIESVYHKEDVASLEAKVVALEEELRKSKQETADYQNLYRQLEKELKELNDHEQQMKPKRMKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNAQLKQLIETKEAIERQRKLFKKKQSDKSDGIDAEAGLPEDILIHDEIYKSRLASLKREEEIIFRERERYEIEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDQNTFCTVLEHCSGKDLDAVLKATPVLPEREAKVIIVQIFQGLIYMNKRTQKIIHYDLKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILYYQMLFGRRPFGHDQTQERILREDTIIKARKVEFPSRPTISNEAKDFIRRCLTYNQAERPDVLTIAQDPYLTFSKK*
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