SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G21040 | AT | Annotation by Michelle Graham. TAIR10: F-box protein 2 | chr5:7145058-7146677 REVERSE LENGTH=539 | SoyBase | E_val: 0 | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0019005 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0271 | KOG | Notchless-like WD40 repeat-containing protein | JGI | ISS | |
| PTHR22844 | Panther | F-BOX AND WD40 DOMAIN PROTEIN | JGI | ISS | |
| PTHR22844:SF13 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF00646 | PFAM | F-box domain | JGI | ISS | |
| UniRef100_G7K2X0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F-box/WD-40 repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7K2X0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M7C9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7C9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g04860 not represented in the dataset |
Glyma14g04860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g44130 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g044300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g04860.1 sequence type=CDS gene model=Glyma14g04860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATTTGAATGCCCTAATGGTACTGAGGTTTCTCAAAGTTTAGCACACTTTGTAGCAAATCCAGGCATAGGCATAGTTGAATCTAATCTCCAGCTTTGTCCCAAATCCTTCACTGAAGGAATAGCAACCTCAAAATTTGTGCCTGATACCAAACCTGAATCTGGGAAGGGTGTGAAGTTAAAGGGAGCATCCAAGATTAATTCCAAGAAAGGCATCAAAGCCCCTGTCAGTGCTTTGAACCAGTCCTCAATACCTGGTGATGTGGTTTTCAATTGTGGTTTGTCCATCACCGACCTTCCTCCAGCATTGATATCCGAGATTCTCAATTGCCTTGATCCCAAGGATCTTGGTGTTGTTTCGTGTGTCTCCCCGATTTTACAAAGAGTTGCGTCCGAGCACCATGCTTGGAAGCAATTCTATTGTGAAAGGTGGGGACTTCCGGCAGCTTCCTTGGCTGTGGGTTCAGGTGTTGTGGATGATGACAAGTCATGGAGGGAACTTTTCGTGGAAAGGGAGTTTAGGAGTAAGACTTTTATGGGACAATATAGTATTGATGTGCTGTATGGACATACTGAAGCAGTTCGGACTATTTTCCTATTGGCTTCTGCGAAGCTCATATTTACCTCTGGGTATGACTCTGTGGTGAGAATGTGGGACATGGAGAATGGGTTGTCAATTGCATCATCACGACCCCTAGGCTGCACCATCCGTGCCGTTGCTGCAGACAGAAAACTATTGGTTGCTGGTGGTACTGATGGATTCATTCATTGTTGGAGGGCTGTTGAAGACCTACCTCACTCATTTGAATTTAGAGCCACACAAAACCAAAATACTGAGGTTCGACTCTGGGGACATGAAGGTCCTATAACTTCACTTGCTTTAGACTTGACAAGGATTTACAGTGGTTCATGGGACACGACTGTTAGAGTGTGGGACCGTCATTCAATGAAGTGTACTGCAGTGTTGAGGCACAGTGATTGGGTCTGGGCACTTGTCCCTCATGATACTACTGTTGCCAGCACATCAGGTTCAGATGTGTATGTTTGGGATACTGATAGTGGGACTTTGGTGACCATTGTCCATAATGCTCATGTTGGTAATACTTATGCTTTGGCACGGAGCCATACAGGGGACTTCCTTTTTACTGGAGGTGAAGACGGTGCAATTCACATGTATGAGATTGTTAATGATGGCTATGAGTCTAAAGCTTGGCATGTTGCTGTTTGGGTTCCTCACTCGGCTGCTGTGTATTCTCTTGCCTTTGAGTTTCCATGGCTTGTTTCCGCATCAAGTGATGGCAAGCTGGCTCTAATTGATGTGAGAAAGCTGTTGAAGATTAGCAAGCGAGCTCTGGGGAAGAGAGTCTCAAAGGTAAAGCATTTGGGTGGAGACATAGTAGAGCCTCCACAGAGGATGTTGCACGGATTTAAGAGCAATCTTTTCTCTGTGGATATAGGAGCTGAACGAATTGTCTGTGGAGGTGAAGAAGGTGTTGTCAGGATCTGGAATTTCACAGAAGCTTTGGAAATTGAACGGAGAGCCCGTGCATTAAGAGGAATACGATTAGACAACAGAATGAGGCGACGGAAACTCCAGACAGAGCTGAGCAATAAAAGTGGTCGGAGTGATCAGTGTTCAGTTGCAGCGAAGAAGAATGCTGTCACTTGTATTTGGCCCAAACGTGGTATGAGTGGAAAGTTGAAAGCATAG
>Glyma14g04860.1 sequence type=predicted peptide gene model=Glyma14g04860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAFECPNGTEVSQSLAHFVANPGIGIVESNLQLCPKSFTEGIATSKFVPDTKPESGKGVKLKGASKINSKKGIKAPVSALNQSSIPGDVVFNCGLSITDLPPALISEILNCLDPKDLGVVSCVSPILQRVASEHHAWKQFYCERWGLPAASLAVGSGVVDDDKSWRELFVEREFRSKTFMGQYSIDVLYGHTEAVRTIFLLASAKLIFTSGYDSVVRMWDMENGLSIASSRPLGCTIRAVAADRKLLVAGGTDGFIHCWRAVEDLPHSFEFRATQNQNTEVRLWGHEGPITSLALDLTRIYSGSWDTTVRVWDRHSMKCTAVLRHSDWVWALVPHDTTVASTSGSDVYVWDTDSGTLVTIVHNAHVGNTYALARSHTGDFLFTGGEDGAIHMYEIVNDGYESKAWHVAVWVPHSAAVYSLAFEFPWLVSASSDGKLALIDVRKLLKISKRALGKRVSKVKHLGGDIVEPPQRMLHGFKSNLFSVDIGAERIVCGGEEGVVRIWNFTEALEIERRARALRGIRLDNRMRRRKLQTELSNKSGRSDQCSVAAKKNAVTCIWPKRGMSGKLKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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