SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27110 | AT | Annotation by Michelle Graham. TAIR10: FAR1-related sequence 3 | chr2:11576969-11580405 REVERSE LENGTH=851 | SoyBase | E_val: 0 | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0009639 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to red or far red light | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PF03101 | PFAM | FAR1 DNA-binding domain | JGI | ISS | |
| PF04434 | PFAM | SWIM zinc finger | JGI | ISS | |
| PF10551 | PFAM | MULE transposase domain | JGI | ISS | |
| UniRef100_E4MXS3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-24-K11 n=1 Tax=Eutrema halophilum RepID=E4MXS3_THEHA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M7C5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7C5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g04820 not represented in the dataset |
Glyma14g04820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g44110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g043900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g04820.1 sequence type=CDS gene model=Glyma14g04820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGAAGGAAGTGACCATCAAGCTATGGCAGACAATGGAAATGCTGAATCTGGTGAAGGTGGAGTGCGTAGTGCTGAAAACAACTCTGGCTCTCATGTTCGGGTTGGGGTGTCTGAGCCATATGTGGGTAGGGAATTTGATTCTCAAGATGCTGCAAAGACTTTCTACAATGAGTATGGCAAACGAGTGGGTTTCAGCTGCAAAGCTGGCCCACATGGTCGTTCCACAGCTGATGGGGCAAATATGTTCCGGGAGTTTCTGTGTGGCAGGGAAGATTCGAAAAGAAAGCCTCCTGAAAGCTGCAATGCAATGATTAGAATCGAGCAGAATGGTCAAAATAAGTGGGTTGTTACAAAATTTATAAAGGAGCATAGCCATTCCATGGCTAGCGTTAGTAAGGTGCATAATATTCGGCCACGTAAACCCTTTTCTAGTGTTGGAAGAACCATGCCTGAAACTTACCAAGGAGTGGGGCTTGTTCCAAGTGGTATGATGTATGTATCTATGGATAAGAATTGCATTCCCACTAAGAATATTCAGGGAATTAAGAATACTCCCGCAGCTGTTGCTGTTGCTGAAACATATCAGCCGGTTAAAAGTCCTACAATGATGAATTATGCTGTTAGGCCAGCTACACGAAAGAGGACATTAGGGAAGGATGCTCACAACCTGCTGGAGTACTTTAAGAAAATGCAAGCTGAGAACCCTGGTTTCTTCTATGCAATACAACTTGATGAAGATAATCATATGTCTAATGTGTTTTGGGCAGATGCAAGATCAAGGACTGCTTACAGTCATTTTGGTGATGCAGTTACTCTGGACACAACATACAGAATAACTCAATATGGAGTGCCATTTGCTCCATTCACTGGTGTAAACCATCATGGTCAGATGATTTTGTTTGGTTGTGCACTTCTTTTGGATGATTCTGAAGCTTCTTTTGTGTGGCTTTTTAAGACATTTCTGACAGCCATGAACGAACATTACCCTGTCTCTATCACTACTGATCAAGACAGAGCCATACAGACAGCTGTTTCACAAGTTTTTCCTCAAACACGCCACTGTATAAGCAAATGGCATGTCTTGCGAGAAGGCCATGAAAAGGTGGCTCATGTATGCAACATGCATCCAAATTTTCAGATTGAACTTTATAATTGTATTAATCTGACGGAAACCATTGAGGAGTTTGATTCATCTTGGAATTTTATCATCAATAAATATGAACTCACGAAAAATGATTGGCTTCAGTCCTTGTACAGTGCTCGTGCTCAATGGGTTCCAGCATATTTTCGTGATTCATTTTTTGCAGCAATATCTCCTAATCAAGGATTTGATGGTTCTATTTTTTATGGTTTTGTCAACCACCAGACAACATTACCACTGTTCTTTAGGCAGTATGAACAAGCTTTGGAGTGCTGGTTTGAAAAAGAATTAGAATCAGATTATGATACTATTTGTACAACCCCTGTTCTGAAGACACCTTCCCCGATGGAGAAGCAGGCTGCTAATCTCTATACGCGGAAAATATTTTCAAAGTTTCAAGAAGAGCTAGTTGAAACTTTTGCTTATACTGCCAACAGAATTGAAGAAGATGGAGAAAATAGCATATTCAGGGTTGCAAAATTTGAGGATGACCAAAAGGTGTATATTGTCACATTAAACCTTTCCGAGTTGAGAGCTAACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTATGTAGACATGTTCTAACTGTTTTTACTGTGACTAATGTACTTACATTACCGTCTCATTACATTTTAAAACGGTGGACAAGAAATTCCAAAAGCAGTGCTGGATCAGTTGAACTTGCTGATGAATCACATGGACCCAAGTCTTTGACATCACGATATAGTAACCTTTGTTGGGAAGCCATCAAATATGCTGAAGAAGGGGCATTGACTGTGGAAACTTATGATACTGCAATTAGTGCTCTTAGAGAAAGTGGAAAGAAGATTTCTTTCATGAGGAGAAGTGTTGCTAAAGTTGCCCCACCCAGTCATCCAGTCAGTGGGACTGCTTATGATGACAGAAAATCCCCTACTTCAGCAGCAGATACAAACCCTCTGTTGTGGCCATTGCAGGATGAAACAACACAGAGGTTTAATCTTAATGATGATAGTACTCCTGTTCAATCAGTTGCTGATCTAAATTTACCACAAATGACCCCAGTGTCTCTCCAGCGAGATGATGGTCCACCTGAAATGGTGGTTTATCCATGTCTGAAATCATTGACGTGGGTAATGGAGAACAAGAACTCAACACCAGGGAATAGAGTAGCTGTTATCAGTCTTAAGTTGCAAGACTATAGCAGGATTCCTTCAACAGAATCAGAGGTTAGGTTTAATCTCTCAAAAGTTACCTTGGAACCATTGTTTAACCATATGGTCAACATCAGTGATCAGCTGTCCATACCAACTAGGAAGTTTGCTGTATTGAATCTCAAGCTTCCAGTCGCGGAGACAACTTCTGGTGCAAGTGAAGTTAAGTTTCAGGTGTCCAAGGACACATTGGGTGCTGTACTACGATCAATGGCCTATATCCGTGAGCAACTCTTGGGTCCTGGTGATGTACAGACAGAACCTATGTCAAAAAGGCCTCGGAAGTGA
>Glyma14g04820.1 sequence type=predicted peptide gene model=Glyma14g04820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEGSDHQAMADNGNAESGEGGVRSAENNSGSHVRVGVSEPYVGREFDSQDAAKTFYNEYGKRVGFSCKAGPHGRSTADGANMFREFLCGREDSKRKPPESCNAMIRIEQNGQNKWVVTKFIKEHSHSMASVSKVHNIRPRKPFSSVGRTMPETYQGVGLVPSGMMYVSMDKNCIPTKNIQGIKNTPAAVAVAETYQPVKSPTMMNYAVRPATRKRTLGKDAHNLLEYFKKMQAENPGFFYAIQLDEDNHMSNVFWADARSRTAYSHFGDAVTLDTTYRITQYGVPFAPFTGVNHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNEHYPVSITTDQDRAIQTAVSQVFPQTRHCISKWHVLREGHEKVAHVCNMHPNFQIELYNCINLTETIEEFDSSWNFIINKYELTKNDWLQSLYSARAQWVPAYFRDSFFAAISPNQGFDGSIFYGFVNHQTTLPLFFRQYEQALECWFEKELESDYDTICTTPVLKTPSPMEKQAANLYTRKIFSKFQEELVETFAYTANRIEEDGENSIFRVAKFEDDQKVYIVTLNLSELRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNSKSSAGSVELADESHGPKSLTSRYSNLCWEAIKYAEEGALTVETYDTAISALRESGKKISFMRRSVAKVAPPSHPVSGTAYDDRKSPTSAADTNPLLWPLQDETTQRFNLNDDSTPVQSVADLNLPQMTPVSLQRDDGPPEMVVYPCLKSLTWVMENKNSTPGNRVAVISLKLQDYSRIPSTESEVRFNLSKVTLEPLFNHMVNISDQLSIPTRKFAVLNLKLPVAETTSGASEVKFQVSKDTLGAVLRSMAYIREQLLGPGDVQTEPMSKRPRK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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