SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55360 | AT | Annotation by Michelle Graham. TAIR10: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr3:20521186-20522856 REVERSE LENGTH=310 | SoyBase | E_val: 0 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0006665 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sphingolipid metabolic process | SoyBase | N/A | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010025 | GO-bp | Annotation by Michelle Graham. GO Biological Process: wax biosynthetic process | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0046520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009923 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: fatty acid elongase complex | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003865 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0009922 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: fatty acid elongase activity | SoyBase | N/A | ISS |
| GO:0016627 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors | SoyBase | N/A | ISS |
| GO:0019166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: trans-2-enoyl-CoA reductase (NADPH) activity | SoyBase | N/A | ISS |
| KOG1639 | KOG | Steroid reductase required for elongation of the very long chain fatty acids | JGI | ISS | |
| PTHR10556 | Panther | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE-RELATED | JGI | ISS | |
| PTHR10556:SF28 | Panther | ENOYL REDUCTASE TSC13-RELATED | JGI | ISS | |
| PF02544 | PFAM | 3-oxo-5-alpha-steroid 4-dehydrogenase | JGI | ISS | |
| UniRef100_B7FIH8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Trans-2,3-enoyl-CoA reductase n=1 Tax=Medicago truncatula RepID=B7FIH8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M7C1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7C1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g04780 not represented in the dataset |
Glyma14g04780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g44090 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g043500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g04780.2 sequence type=transcript gene model=Glyma14g04780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTCATCTTCTATTGACCATACTTCACATTAATTTATCTTCTCCCATCTAAAATCTATATATAATATATTACATCTGAGGTTCAATTTTCCTAAGCTCACATTTCCTTTGTGTTTGTGAGTAATTTGCAAACACACCATTTGCAAACACACCAAAACCATCTCTCTCTCTCTCTCTCTCTCCAATTCAGACCCCTAGTTCTGTTGGATCTTGCATATAGTAACCCTTTATTGATTCGCAAAGATGAAGGTCACAGTGGTTTCTCGGAGTGGAAGAGAAGTGGTTAAAGGTGGCGTTGAGCTCAGTGATTCTGCTACTATAGCAGATCTGCAGGAGGCAATTCATAAGCGAACCAAGAAGTACCCATCAAGGCAGCGCTTGACACTTCCAGTCCAACCTGGATCAAAGGAAAGGCCTGTTGTCCTTAATTACAAAAAGAGTCTGAAAGACTATACAAGTGGAAATTCAGAAACCTTAACTGTTGTATTCAAGGATTTGGGCCCACAAGTTTCTTACCGGACACTTTTCTTCTGCGAGTATTTGGGACCTTTGCTTCTCTATCCAGTCTTCTATTATCTCCCTGTCTACCAATATTTTGGTTACAAAGGTGAACGTGTGATCCACCCTGTGCAGACATATGCCTTGTACTACTGGTGTTTCCATTATGCCAAACGAATTCTGGAAACATTTTTTGTGCATCGCTTCAGCCATGCAACCTCACCCCTTTCCAATGTGTTTCGTAACTGTGCTTATTACTGGACCTTTGGCTCCTATATTGCTTATTATGTGAACCACCCTTTATATACCCCTGTAAATGACCTCCAAATGAAGATTGGGTTTGCAATTGGAATACTTTGTCAAATTTCAAATTTCTATTGCCATATTATTCTGAAGAATCTTCGTAGTCCTGGTGGTGAAGGTGGATACCAAATCCCAAGGGGCTTTCTCTTCAATATTGTTACCTGTGCAAATTATACAACTGAGATCTATCAGTGGTTGGGATTCAACATTGCAACACAAACTGTTGCAGGCTATATTTTCCTTGTGGTTGCTACTTTTATCATGACCAATTGGGCTTTAGCCAAGCACAGGCGTTTAAAGAAGTTATTTGATGGAAAGGAAGGGAGACCTAGGTATCCTCGTCGATGGGTAACATTGCCCCCATTCCTGTAGAAGCCAAAGCAACTGATGAAGTCACCACTCTGCTCACAGGATTCTGAGATTTAAATTGTAGCATAATGGAATTTTCGTGATCTCTTTTTATAAGATATGGATTTGTCTTGCAATGCTTTTGACTATGAAGTTGATTGCTAAATCATTGAATCAGTGTTTTGCAGAATATTTGTAATCATTTCAAGATTGTAGTTCTGAGGATTCTTGTTTCTTCAAAATCTTCACCTTGTTTCTGTTTAATTTATGCTGGCTATTTCCTTTTACTGTCTCCAATGTTTCATTAATCATTTTAGAAAATTAAAGTTCAATTTTGTAGCTCATACACTATGCAATGATGAGGCTTCAAGAGTCAAAA
>Glyma14g04780.1 sequence type=CDS gene model=Glyma14g04780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGTCACAGTGGTTTCTCGGAGTGGAAGAGAAGTGGTTAAAGGTGGCGTTGAGCTCAGTGATTCTGCTACTATAGCAGATCTGCAGGAGGCAATTCATAAGCGAACCAAGAAGTACCCATCAAGGCAGCGCTTGACACTTCCAGTCCAACCTGGATCAAAGGAAAGGCCTGTTGTCCTTAATTACAAAAAGAGTCTGAAAGACTATACAAGTGGAAATTCAGAAACCTTAACTGTTGTATTCAAGGATTTGGGCCCACAAGTTTCTTACCGGACACTTTTCTTCTGCGAGTATTTGGGACCTTTGCTTCTCTATCCAGTCTTCTATTATCTCCCTGTCTACCAATATTTTGGTTACAAAGGTGAACGTGTGATCCACCCTGTGCAGACATATGCCTTGTACTACTGGTGTTTCCATTATGCCAAACGAATTCTGGAAACATTTTTTGTGCATCGCTTCAGCCATGCAACCTCACCCCTTTCCAATGTGTTTCGTAACTGTGCTTATTACTGGACCTTTGGCTCCTATATTGCTTATTATGTGAACCACCCTTTATATACCCCTGTAAATGACCTCCAAATGAAGATTGGGTTTGCAATTGGAATACTTTGTCAAATTTCAAATTTCTATTGCCATATTATTCTGAAGAATCTTCGTAGTCCTGGTGGTGAAGGTGGATACCAAATCCCAAGGGGCTTTCTCTTCAATATTGTTACCTGTGCAAATTATACAACTGAGATCTATCAGTGGTTGGGATTCAACATTGCAACACAAACTGTTGCAGGCTATATTTTCCTTGTGGTTGCTACTTTTATCATGACCAATTGGGCTTTAGCCAAGCACAGGCGTTTAAAGAAGTTATTTGATGGAAAGGAAGGGAGACCTAGGTATCCTCGTCGATGGGTAACATTGCCCCCATTCCTGTAG >Glyma14g04780.2 sequence type=CDS gene model=Glyma14g04780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGTCACAGTGGTTTCTCGGAGTGGAAGAGAAGTGGTTAAAGGTGGCGTTGAGCTCAGTGATTCTGCTACTATAGCAGATCTGCAGGAGGCAATTCATAAGCGAACCAAGAAGTACCCATCAAGGCAGCGCTTGACACTTCCAGTCCAACCTGGATCAAAGGAAAGGCCTGTTGTCCTTAATTACAAAAAGAGTCTGAAAGACTATACAAGTGGAAATTCAGAAACCTTAACTGTTGTATTCAAGGATTTGGGCCCACAAGTTTCTTACCGGACACTTTTCTTCTGCGAGTATTTGGGACCTTTGCTTCTCTATCCAGTCTTCTATTATCTCCCTGTCTACCAATATTTTGGTTACAAAGGTGAACGTGTGATCCACCCTGTGCAGACATATGCCTTGTACTACTGGTGTTTCCATTATGCCAAACGAATTCTGGAAACATTTTTTGTGCATCGCTTCAGCCATGCAACCTCACCCCTTTCCAATGTGTTTCGTAACTGTGCTTATTACTGGACCTTTGGCTCCTATATTGCTTATTATGTGAACCACCCTTTATATACCCCTGTAAATGACCTCCAAATGAAGATTGGGTTTGCAATTGGAATACTTTGTCAAATTTCAAATTTCTATTGCCATATTATTCTGAAGAATCTTCGTAGTCCTGGTGGTGAAGGTGGATACCAAATCCCAAGGGGCTTTCTCTTCAATATTGTTACCTGTGCAAATTATACAACTGAGATCTATCAGTGGTTGGGATTCAACATTGCAACACAAACTGTTGCAGGCTATATTTTCCTTGTGGTTGCTACTTTTATCATGACCAATTGGGCTTTAGCCAAGCACAGGCGTTTAAAGAAGTTATTTGATGGAAAGGAAGGGAGACCTAGGTATCCTCGTCGATGGGTAACATTGCCCCCATTCCTGTAG
>Glyma14g04780.1 sequence type=predicted peptide gene model=Glyma14g04780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKVTVVSRSGREVVKGGVELSDSATIADLQEAIHKRTKKYPSRQRLTLPVQPGSKERPVVLNYKKSLKDYTSGNSETLTVVFKDLGPQVSYRTLFFCEYLGPLLLYPVFYYLPVYQYFGYKGERVIHPVQTYALYYWCFHYAKRILETFFVHRFSHATSPLSNVFRNCAYYWTFGSYIAYYVNHPLYTPVNDLQMKIGFAIGILCQISNFYCHIILKNLRSPGGEGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVATFIMTNWALAKHRRLKKLFDGKEGRPRYPRRWVTLPPFL* >Glyma14g04780.2 sequence type=predicted peptide gene model=Glyma14g04780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKVTVVSRSGREVVKGGVELSDSATIADLQEAIHKRTKKYPSRQRLTLPVQPGSKERPVVLNYKKSLKDYTSGNSETLTVVFKDLGPQVSYRTLFFCEYLGPLLLYPVFYYLPVYQYFGYKGERVIHPVQTYALYYWCFHYAKRILETFFVHRFSHATSPLSNVFRNCAYYWTFGSYIAYYVNHPLYTPVNDLQMKIGFAIGILCQISNFYCHIILKNLRSPGGEGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVATFIMTNWALAKHRRLKKLFDGKEGRPRYPRRWVTLPPFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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