SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma14g04550

Feature Type:gene_model
Chromosome:Gm14
Start:3125618
stop:3129187
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g04550
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G20770AT Annotation by Michelle Graham. TAIR10: Ethylene insensitive 3 family protein | chr3:7260702-7262588 REVERSE LENGTH=628 SoyBaseE_val: 0ISS
GO:0000303GO-bp Annotation by Michelle Graham. GO Biological Process: response to superoxide SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006487GO-bp Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0008219GO-bp Annotation by Michelle Graham. GO Biological Process: cell death SoyBaseN/AISS
GO:0009639GO-bp Annotation by Michelle Graham. GO Biological Process: response to red or far red light SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009743GO-bp Annotation by Michelle Graham. GO Biological Process: response to carbohydrate stimulus SoyBaseN/AISS
GO:0009751GO-bp Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus SoyBaseN/AISS
GO:0009755GO-bp Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0071281GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF04873PFAM Ethylene insensitive 3 JGI ISS
UniRef100_Q8SA69UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor EIL1 n=1 Tax=Vigna radiata RepID=Q8SA69_VIGRA SoyBaseE_val: 0ISS
UniRef100_UPI00018C6C23UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00018C6C23 related cluster n=1 Tax=unknown RepID=UPI00018C6C23 SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g04550
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g04550
ParalogEvidenceComments
Glyma02g44220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g04550 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g041500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g04550
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g04550
>Glyma14g04550.1   sequence type=CDS   gene model=Glyma14g04550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATGTTTGAAGATATGGGATTCTGTGGCGATTTGGATATGTTATGTGGTTCTCTTGGGGATGGGGATATTGCTGTGAGACAAACTGAACCGGATCCTGTAGTTGAGGATGACTACAGTGATGAAGAAATTGATGTGGATGAACTCGAGAAGAGGATGTGGAGGGACAAAATGCGTCTCAAGCGATTGAAAGAACAAACCAAGTCCAAGGAAGGGACTGATGCAGCAAAGCAAAGGCAATCCCAAGAGCAGGCAAGGAGGAAAAAGATGTCAAGAGCCCAAGATGGAATACTGAAGTACATGCTGAAGATGATGGAGGTTTGCAAGGCACAAGGGTTTGTTTATGGGATAATTCCTGAGAAGGGGAAGCCAGTGACCGGAGCATCAGATAATCTTCGCGAATGGTGGAAAGATAAGGTCAGGTTTGATCGAAATGGTCCTGCTGCCATAGCCAAGTATCAAGCCGATAATGCAATTCCTGGAAAGAATGATGGATGCAATTCCATTGGTCCTACACCACACACCTTGCAAGAGTTACAGGACACAACCTTGGGTTCTCTCTTGTCAGCACTTATGCAGCACTGTGATCCTCCTCAGAGGAGGTTCCCACTAGAGAAGGGTGTTCCTCCACCATGGTGGCCAACTGGGAATGAAGAATGGTGGCCTCAAATTGGTCTACCTAAAGATCAAGGCCCTCCACCTTACAAGAAACCACATGACTTAAAGAAGGCGTGGAAGGTTGGTGTTCTCACTGCAGTCATCAAGCATATGTCCCCTGATATCGCCAAAATTCGCAAGCTTGTGAGGCAGTCCAAATGCCTTCAAGACAAAATGACAGCAAAGGAAAGTGCAACCTGGCTTGCCATCATCAACCAAGAGGAAGCCTTGGCTAGAGAGCTTTACCCTGATTATTGCCCTCCGTTTTCCTCTGCTGTAGCTAATGGATCCATGGTGATCAACGATTGCAGTGAGTATGATGTTGATGGGGCTGAAGAAGAGCCGAACTTCGATGTTGAGGACCGGAAGCCCGACCATCTTCATCCATCAAACCTTGGGATGGAGAGAATGATGGGAAGGATGCCAATTCAGCAACCTTCTCATCCCATGAAGGGAGATGTTGTCACAAACCTAGATTTCATCCGGAAGAGGAAGATTTCTAGTGACTTCAACATGATGATGGATCAGAAAATCTACACATGCGAGCATCCCCAATGCCCTTACAGCGAAGTTCGCCTTGGTTTCCATGATAGGTCTGCTAGGGACAATCATCAATTGAATTGTGCATATAGAAACAGTTCTGCAGATTATGGTGGTGGTCCCAATTTCCATGCTACTGAGGTTAAGCCAGTCATATTCCCCCAGTCCTTTGTTCAACCCAACACTACAGCTCAGTCTGCAAGTTTGGTTGCACCTTCATTTGATCTAACTGGTCTTGGAGTTCCTGAGGATGGCCAGAAAATGATTAGTGACCTTATGACAATCTATGATACAAATGTTGTAGGAAACAAAAACCTAAGCTCCACCAACTGTGTTACTGCTGAAAATCATAACCTTTCTCAGGCCAGCTTACAACGACAGGACAGTTTTTTCCCTGGTCAAGGAATGGTGTTGGAAGGGAACTTGTTTGCACGAGAGGAAGGTCAATTTGACCGGTTCAAGGCCACCATGAACATGAACACTCCTTTTGATACCAACCACAACAACAATAATATCCATTTGATGTTTAATTCCCCTTGTGATTTGTCATCCTTTGATTTCAAGGAGGATATACAAGGAGTAGGAATGGATTCTCTTCAAAAACAGCAAGAGGTTTCAATTTGGTACCAGTGA
Predicted protein sequences of Glyma14g04550
>Glyma14g04550.1   sequence type=predicted peptide   gene model=Glyma14g04550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMMFEDMGFCGDLDMLCGSLGDGDIAVRQTEPDPVVEDDYSDEEIDVDELEKRMWRDKMRLKRLKEQTKSKEGTDAAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGKNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGNEEWWPQIGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPDYCPPFSSAVANGSMVINDCSEYDVDGAEEEPNFDVEDRKPDHLHPSNLGMERMMGRMPIQQPSHPMKGDVVTNLDFIRKRKISSDFNMMMDQKIYTCEHPQCPYSEVRLGFHDRSARDNHQLNCAYRNSSADYGGGPNFHATEVKPVIFPQSFVQPNTTAQSASLVAPSFDLTGLGVPEDGQKMISDLMTIYDTNVVGNKNLSSTNCVTAENHNLSQASLQRQDSFFPGQGMVLEGNLFAREEGQFDRFKATMNMNTPFDTNHNNNNIHLMFNSPCDLSSFDFKEDIQGVGMDSLQKQQEVSIWYQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo