SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26970 | AT | Annotation by Michelle Graham. TAIR10: Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:11509908-11511903 REVERSE LENGTH=222 | SoyBase | E_val: 2.00E-101 | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004527 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: exonuclease activity | SoyBase | N/A | ISS |
| KOG3242 | KOG | Oligoribonuclease (3'->5' exoribonuclease) | JGI | ISS | |
| PTHR11046 | Panther | OLIGORIBONUCLEASE, MITOCHONDRIAL | JGI | ISS | |
| PF00929 | PFAM | Exonuclease | JGI | ISS | |
| UniRef100_G7K7Q6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Oligoribonuclease n=1 Tax=Medicago truncatula RepID=G7K7Q6_MEDTR | SoyBase | E_val: 2.00E-112 | ISS |
| UniRef100_I1M796 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M796_SOYBN | SoyBase | E_val: 7.00E-179 | ISS |
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Glyma14g04450 not represented in the dataset |
Glyma14g04450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g44360 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g040400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g04450.1 sequence type=CDS gene model=Glyma14g04450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAACTAGCAAATTCATTTTCAGTGTTAGAACTCGACGCCGACGATAGCCATGTTCCCACCACTGCCGATATTAGTGACAAGAGGGTTAATGCCGACGTTGACATTGTACCAGTAAAAAGCGAGAAACAAAATCAAGAAAATCCAGTGACTCCTTCGTGTGAATACAAGTTACCTCTTGTGTGGATTGACTTGGAAATGACTGGCTTAAATATTGAAGTGGACAGAATATTGGAGATTGCTTGTATAATTACAGATGGAAATTTAACCAAAACAGTGGAGGGTCCTGATTTGGTCATCCATCAAACCAAGGAGTGCCTTGACAGGATGGGAGAATGGTGTCAAAGTCATCATGCAGCTAGTGGGTTGACAAAAAAGGTGCTAAAAAGTACAATAAGTGAAGGAGAAGCTGAAGAGCAGGTTATTGAATTTGTTAAGAGATATGTTAATGTTGGTTCGCACACACCTCACTTGGCAGGAAATTCAATATATGTTGATTTTCAATTTCTGAAGAAATACATGCCAAAATTGGCAAGTCTCTTCTCTCATGTACTTGTTGATGTTAGTAGTGTTAAAGCTCTCTGCATTCGCTGGTATCCCAAAGATCAGAAGAGAGCACCTTCAAAATTAAACAGACACAGAGCTTTGGATGACATTAGAGAAAGCATTGAAGAACTTAGATACTACAAGGCAAATATTTTTAAGCCCAAGTCCAGAAAGTCATAG
>Glyma14g04450.1 sequence type=predicted peptide gene model=Glyma14g04450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKLANSFSVLELDADDSHVPTTADISDKRVNADVDIVPVKSEKQNQENPVTPSCEYKLPLVWIDLEMTGLNIEVDRILEIACIITDGNLTKTVEGPDLVIHQTKECLDRMGEWCQSHHAASGLTKKVLKSTISEGEAEEQVIEFVKRYVNVGSHTPHLAGNSIYVDFQFLKKYMPKLASLFSHVLVDVSSVKALCIRWYPKDQKRAPSKLNRHRALDDIRESIEELRYYKANIFKPKSRKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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