SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26800 | AT | Annotation by Michelle Graham. TAIR10: Aldolase superfamily protein | chr2:11429192-11432185 REVERSE LENGTH=433 | SoyBase | E_val: 0 | ISS |
| GO:0006551 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leucine metabolic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004419 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydroxymethylglutaryl-CoA lyase activity | SoyBase | N/A | ISS |
| KOG2368 | KOG | Hydroxymethylglutaryl-CoA lyase | JGI | ISS | |
| PTHR10277 | Panther | ISOPROPYLMALATE SYNTHASE RELATED | JGI | ISS | |
| PTHR10277:SF1 | Panther | 4-HYDROXY-2-OXOVALERATE ALDOLASE | JGI | ISS | |
| PF00682 | PFAM | HMGL-like | JGI | ISS | |
| UniRef100_G7IZR1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hydroxymethylglutaryl-CoA lyase n=2 Tax=Medicago truncatula RepID=G7IZR1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BB48 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BB48 related cluster n=1 Tax=unknown RepID=UPI000233BB48 | SoyBase | E_val: 0 | ISS |
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Glyma14g04110 not represented in the dataset |
Glyma14g04110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g44610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g036600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g04110.1 sequence type=CDS gene model=Glyma14g04110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAAGTTTGGAGGAACCACTTGGTCTTGACAAGTTACCAAGCATGAATACCATTGACAGGATTCAGAGGTTCTCGTCAGGTTCTTGCCGTCCTAGAGTAGATAACTTGGGCATGGGAAACTGCTGGATTGAAGGACGAAGTTGCAGCACATCTAACAGCTGCAATGAAGATGATGAAGAGTATACAGCAGAGACATTCCCATGGAAAATACAAACAAGAGACTTATCCCAAGATGACTCCTTCAGTCAAAAGTCTTTGACCAAAGGGAGGAGGTCAATGAAATTTGGAATGATTGATGATTCAATCTCTGATTGCCAAAGCAGTCCAAAATGCCACACCAAAGATATGCAAGGTTTGGCTTATAAGTTTCTGAATAGTATACCAAAGTTTGTAAAGATAGTAGAAGTTGGTCCAAGGGATGGATTACAAAATGAGAAGAACATTGTGCCTACATCTGTGAAGATTGAATTGATTCATAGACTAGCTTCCACTGGGTTATCTGTTATTGAGGCTACAAGCTTTGTATCTCCCAAATGGGTCCCACAGTTGGCTGATGCAAAGGATGTAATGCAAGCAGTACATAACTTGAGAGGCATCAGATTACCAGTTCTGACCCCTAATTTAAAGGGTTTTGAAGCTGCAATGGCTTCTGGTGCCAGAGAAGTTGCTATTTTTGCATCAGCTTCGGAATCATTTTCAAAATCAAACATTAACTGTAGCATCGAAGAGAGCCTTATTCGTTTCCGAGCTGTTACTCGTGCTGCTAAACAACTCTCAATTCCTGTTCGAGGGTATGTATCATGTGTTGCTGGATGCCCAGTGGAAGGACCAATCCCTCCTTCCAAAGTGGCATATGTTGCTAAAGAATTATATGATATGGGTTGCTTTGAAATCTCCCTTGGTGACACAATTGGAGTTGGCACACCAGGAACTGTAGTTCCTATGCTTTTGGCTGTGATGGCTGTAGTTCCAATAGATAAGATAGCTGTCCACTTTCATGACACATATGGGCAATCTCTTCCAAATATACTTGTGTCCCTCCAAATGGGGATTAGCACAGTGGATTCCTCTGTTGCTGGTCTTGGTGGGTGTCCATATGCTAAGGGAGCTTCAGGAAATGTTGCAACTGAAGATGTTGTTTATATGTTGAACGGCCTTGGTGTCAAAACCAATGTTGATCTTGGAAAACTCATGTTGGCTGGGGATTTCATCAGCAACCATTTGGGGAGGCCATCCACTTCAAAGACTGCCATTGCCTTGAACCGTGTCACAAGTAATGCATCCAAGATATCATATTAA
>Glyma14g04110.1 sequence type=predicted peptide gene model=Glyma14g04110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSLEEPLGLDKLPSMNTIDRIQRFSSGSCRPRVDNLGMGNCWIEGRSCSTSNSCNEDDEEYTAETFPWKIQTRDLSQDDSFSQKSLTKGRRSMKFGMIDDSISDCQSSPKCHTKDMQGLAYKFLNSIPKFVKIVEVGPRDGLQNEKNIVPTSVKIELIHRLASTGLSVIEATSFVSPKWVPQLADAKDVMQAVHNLRGIRLPVLTPNLKGFEAAMASGAREVAIFASASESFSKSNINCSIEESLIRFRAVTRAAKQLSIPVRGYVSCVAGCPVEGPIPPSKVAYVAKELYDMGCFEISLGDTIGVGTPGTVVPMLLAVMAVVPIDKIAVHFHDTYGQSLPNILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVKTNVDLGKLMLAGDFISNHLGRPSTSKTAIALNRVTSNASKISY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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