SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19370 | AT | Annotation by Michelle Graham. TAIR10: rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein | chr5:6524247-6526629 REVERSE LENGTH=299 | SoyBase | E_val: 3.00E-104 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016853 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: isomerase activity | SoyBase | N/A | ISS |
| KOG3258 | KOG | Parvulin-like peptidyl-prolyl cis-trans isomerase | JGI | ISS | |
| PTHR10657 | Panther | ROTAMASE | JGI | ISS | |
| PTHR10657:SF4 | Panther | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTI | JGI | ISS | |
| PF00581 | PFAM | Rhodanese-like domain | JGI | ISS | |
| PF00639 | PFAM | PPIC-type PPIASE domain | JGI | ISS | |
| UniRef100_G7K321 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase C n=2 Tax=Medicago truncatula RepID=G7K321_MEDTR | SoyBase | E_val: 6.00E-143 | ISS |
| UniRef100_I1M753 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M753_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g04000 not represented in the dataset |
Glyma14g04000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g44730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g035700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g04000.2 sequence type=transcript gene model=Glyma14g04000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTATTGTTTCGGCCAGACAAATAGCAATAGCAGCAATGTCAATGTTGAGATCAGTTTGTCAGTTGAGAGTGGGAGTGGCAACTCCAAAACCTTGCCTCCATCCCTCAATCTTCTTATTCTCCCTTTCTCTCTCTCACAACACTCACACTCTCACCTCTTTCCCCAGAACCTTCCGTTTCCACCCACTTTCACTCCCTCTTTCACCCTTTGTGCTCTTCATGCCTCCCAAAGCAACAGCTTCGTATGGCACTGGGGCTAGTGGTGCTGCTGAAGGTGATAGGCCAAGGGAGATATTGGTGCAGCATTTGTTGGTAAAAGAAGATGACCAGAAGCTTCTGTTGTATCTTCAGCAGAAAATCTCTTCAGGTGAAGATTTGAGTGATCTTGCTGTGGAATATTCACTATGCCCATCCAAAGAAGAAGGAGGGATGCTTGGGTGGGTCAGAAAGGGGCAAATGGTTCCTGAATTTGAAGAGGCTGCATTTACTGCACCTTTAAACCAAGTTGTAAGGTGCAAAACGAAATTTGGATGGCACCTGCTGCAGGTTTTATCTGAAAGGGAAGAATCAATTCTTCAAGACATTCAACCTGATGAGCTGCATATGAAAATTCAAGATCCCAGCTTTTTGGATGAGGCACAATTAATTGATGTGCGAGAGCCTGATGAAGTGTATGCTCATATTTTCTTCAACCATAATTAGTTTTGAATTGAAGTGAATTATTGCCTGATCGCATTTGGTTAAATGTTTGTAAATAGACCAAGCGAGTGATTATAAGCTGATATGATTGGCGATAAGCTTAAAAAAAAGTGAAAGTAAGATATATTGTTCAATTGAAAGTTTTGAGAGCATTTCAATTTTCAATGTTTATGCTCTTTTGACATCTCAAAGGCAACAAGGGGATCTACTTTTATTTGACTGGTTGGGATATTCATTTAGTAGCTCTTACACTTATTTGCATCTATTTTTCTTTTGTTCTGCAGTTTTTGGAATCTTCCTATGCTGCTTATTTTTATTTTAGTAGCTGATCTGTTTTTTCTTCATTTAAATGACATTCTCAACATCCACAGGGCCAAAGCATCTTTGCCAGGATTTACTGTTCTTCCCCTCCGACAATTTGGAAGCTGGGGGCCTGAAATAACTACCAAATTTGACCCTCAAAAGGATACATATGTCATGTGTCATCATGGCATGCGGTCATTACAAGTTGCTAAGTGGTTGCAGTCACAGGGTTTTAGGAAAGTATACAATCTTTCTGGGGGAATCCATGCCTATGCTGTCCAGGTTGATCCATCAGTCCCCACATATTGATTTACATTATTCTGCCATAAATGTAGTCCTTTACTTTTCTACTTTCCATCTTTGTACATGAGAGCAAGATTTTGTGGGATGTCCATGTTACCTTTAGGAATTGGAATTCTCTTGGTATGAACATGTATTTATTTTGGATCAAGAGTATGAGGCTACATATCAAGTGCTAGTTTTTGTGAAGCTTGCCTCGGCTGTGAGGTGATTTATGATTTTCTTAGCAAGTAATTGCTACTTGGTTTTATCGGTTTCTTTCCCAATAATTATTTGTCTGTGTAATTCCCTTTCAATACTATATGGCTCTCTATTCCTGGCTGGAATCATAGCTGGGTTAAGGGTTCCTTGGCTGAGTACCTTTAATTATTATTATTTTTTTACCAAGAGATCTAGTTTAGTTGGTTGAGCAAGTGTGCCAGTTGTTTTGATTCCTACA >Glyma14g04000.3 sequence type=transcript gene model=Glyma14g04000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTATTGTTTCGGCCAGACAAATAGCAATAGCAGCAATGTCAATGTTGAGATCAGTTTGTCAGTTGAGAGTGGGAGTGGCAACTCCAAAACCTTGCCTCCATCCCTCAATCTTCTTATTCTCCCTTTCTCTCTCTCACAACACTCACACTCTCACCTCTTTCCCCAGAACCTTCCGTTTCCACCCACTTTCACTCCCTCTTTCACCCTTTGTGCTCTTCATGCCTCCCAAAGCAACAGCTTCGTATGGCACTGGGGCTAGTGGTGCTGCTGAAGGTGATAGGCCAAGGGAGATATTGGTGCAGCATTTGTTGGTAAAAGAAGATGACCAGAAGCTTCTGTTGTATCTTCAGCAGAAAATCTCTTCAGGTGAAGATTTGAGTGATCTTGCTGTGGAATATTCACTATGCCCATCCAAAGAAGAAGGAGGGATGCTTGGGTGGGTCAGAAAGGGGCAAATGGTTCCTGAATTTGAAGAGGCTGCATTTACTGCACCTTTAAACCAAGTTGTAAGGTGCAAAACGAAATTTGGATGGCACCTGCTGCAGGTTTTATCTGAAAGGGAAGAATCAATTCTTCAAGACATTCAACCTGATGAGCTGCATATGAAAATTCAAGATCCCAGCTTTTTGGATGAGGCACAATTAATTGATGTGCGAGAGCCTGATGAAGTGGCCAAAGCATCTTTGCCAGGATTTACTGTTCTTCCCCTCCGACAATTTGGAAGCTGGGGGCCTGAAATAACTACCAAATTTGACCCTCAAAAGGATACATATGTCATGGGTTTTAGGAAAGTATACAATCTTTCTGGGGGAATCCATGCCTATGCTGTCCAGGTTGATCCATCAGTCCCCACATATTGATTTACATTATTCTGCCATAAATGTAGTCCTTTACTTTTCTACTTTCCATCTTTGTACATGAGAGCAAGATTTTGTGGGATGTCCATGTTACCTTTAGGAATTGGAATTCTCTTGGTATGAACATGTATTTATTTTGGATCAAGAGTATGAGGCTACATATCAAGTGCTAGTTTTTGTGAAGCTTGCCTCGGCTGTGAGGTGATTTATGATTTTCTTAGCAAGTAATTGCTACTTGGTTTTATCGGTTTCTTTCCCAATAATTATTTGTCTGTGTAATTCCCTTTCAATACTATATGGCTCTCTATTCCTGGCTGGAATCATAGCTGGGTTAAGGGTTCCTTGGCTGAGTACCTTTAATTATTATTATTTTTTTACCAAGAGATCTAGTTTAGTTGGTTGAGCAAGTGTGCCAGTTGTTTTGATTCCTACA
>Glyma14g04000.1 sequence type=CDS gene model=Glyma14g04000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAATGTTGAGATCAGTTTGTCAGTTGAGAGTGGGAGTGGCAACTCCAAAACCTTGCCTCCATCCCTCAATCTTCTTATTCTCCCTTTCTCTCTCTCACAACACTCACACTCTCACCTCTTTCCCCAGAACCTTCCGTTTCCACCCACTTTCACTCCCTCTTTCACCCTTTGTGCTCTTCATGCCTCCCAAAGCAACAGCTTCGTATGGCACTGGGGCTAGTGGTGCTGCTGAAGGTGATAGGCCAAGGGAGATATTGGTGCAGCATTTGTTGGTAAAAGAAGATGACCAGAAGCTTCTGTTGTATCTTCAGCAGAAAATCTCTTCAGGTGAAGATTTGAGTGATCTTGCTGTGGAATATTCACTATGCCCATCCAAAGAAGAAGGAGGGATGCTTGGGTGGGTCAGAAAGGGGCAAATGGTTCCTGAATTTGAAGAGGCTGCATTTACTGCACCTTTAAACCAAGTTGTAAGGTGCAAAACGAAATTTGGATGGCACCTGCTGCAGGTTTTATCTGAAAGGGAAGAATCAATTCTTCAAGACATTCAACCTGATGAGCTGCATATGAAAATTCAAGATCCCAGCTTTTTGGATGAGGCACAATTAATTGATGTGCGAGAGCCTGATGAAGTGGCCAAAGCATCTTTGCCAGGATTTACTGTTCTTCCCCTCCGACAATTTGGAAGCTGGGGGCCTGAAATAACTACCAAATTTGACCCTCAAAAGGATACATATGTCATGTGTCATCATGGCATGCGGTCATTACAAGTTGCTAAGTGGTTGCAGTCACAGGGTTTTAGGAAAGTATACAATCTTTCTGGGGGAATCCATGCCTATGCTGTCCAGGTTGATCCATCAGTCCCCACATATTGA >Glyma14g04000.2 sequence type=CDS gene model=Glyma14g04000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAATGTTGAGATCAGTTTGTCAGTTGAGAGTGGGAGTGGCAACTCCAAAACCTTGCCTCCATCCCTCAATCTTCTTATTCTCCCTTTCTCTCTCTCACAACACTCACACTCTCACCTCTTTCCCCAGAACCTTCCGTTTCCACCCACTTTCACTCCCTCTTTCACCCTTTGTGCTCTTCATGCCTCCCAAAGCAACAGCTTCGTATGGCACTGGGGCTAGTGGTGCTGCTGAAGGTGATAGGCCAAGGGAGATATTGGTGCAGCATTTGTTGGTAAAAGAAGATGACCAGAAGCTTCTGTTGTATCTTCAGCAGAAAATCTCTTCAGGTGAAGATTTGAGTGATCTTGCTGTGGAATATTCACTATGCCCATCCAAAGAAGAAGGAGGGATGCTTGGGTGGGTCAGAAAGGGGCAAATGGTTCCTGAATTTGAAGAGGCTGCATTTACTGCACCTTTAAACCAAGTTGTAAGGTGCAAAACGAAATTTGGATGGCACCTGCTGCAGGTTTTATCTGAAAGGGAAGAATCAATTCTTCAAGACATTCAACCTGATGAGCTGCATATGAAAATTCAAGATCCCAGCTTTTTGGATGAGGCACAATTAATTGATGTGCGAGAGCCTGATGAAGTGTATGCTCATATTTTCTTCAACCATAATTAG >Glyma14g04000.3 sequence type=CDS gene model=Glyma14g04000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAATGTTGAGATCAGTTTGTCAGTTGAGAGTGGGAGTGGCAACTCCAAAACCTTGCCTCCATCCCTCAATCTTCTTATTCTCCCTTTCTCTCTCTCACAACACTCACACTCTCACCTCTTTCCCCAGAACCTTCCGTTTCCACCCACTTTCACTCCCTCTTTCACCCTTTGTGCTCTTCATGCCTCCCAAAGCAACAGCTTCGTATGGCACTGGGGCTAGTGGTGCTGCTGAAGGTGATAGGCCAAGGGAGATATTGGTGCAGCATTTGTTGGTAAAAGAAGATGACCAGAAGCTTCTGTTGTATCTTCAGCAGAAAATCTCTTCAGGTGAAGATTTGAGTGATCTTGCTGTGGAATATTCACTATGCCCATCCAAAGAAGAAGGAGGGATGCTTGGGTGGGTCAGAAAGGGGCAAATGGTTCCTGAATTTGAAGAGGCTGCATTTACTGCACCTTTAAACCAAGTTGTAAGGTGCAAAACGAAATTTGGATGGCACCTGCTGCAGGTTTTATCTGAAAGGGAAGAATCAATTCTTCAAGACATTCAACCTGATGAGCTGCATATGAAAATTCAAGATCCCAGCTTTTTGGATGAGGCACAATTAATTGATGTGCGAGAGCCTGATGAAGTGGCCAAAGCATCTTTGCCAGGATTTACTGTTCTTCCCCTCCGACAATTTGGAAGCTGGGGGCCTGAAATAACTACCAAATTTGACCCTCAAAAGGATACATATGTCATGGGTTTTAGGAAAGTATACAATCTTTCTGGGGGAATCCATGCCTATGCTGTCCAGGTTGATCCATCAGTCCCCACATATTGA
>Glyma14g04000.1 sequence type=predicted peptide gene model=Glyma14g04000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSMLRSVCQLRVGVATPKPCLHPSIFLFSLSLSHNTHTLTSFPRTFRFHPLSLPLSPFVLFMPPKATASYGTGASGAAEGDRPREILVQHLLVKEDDQKLLLYLQQKISSGEDLSDLAVEYSLCPSKEEGGMLGWVRKGQMVPEFEEAAFTAPLNQVVRCKTKFGWHLLQVLSEREESILQDIQPDELHMKIQDPSFLDEAQLIDVREPDEVAKASLPGFTVLPLRQFGSWGPEITTKFDPQKDTYVMCHHGMRSLQVAKWLQSQGFRKVYNLSGGIHAYAVQVDPSVPTY* >Glyma14g04000.2 sequence type=predicted peptide gene model=Glyma14g04000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSMLRSVCQLRVGVATPKPCLHPSIFLFSLSLSHNTHTLTSFPRTFRFHPLSLPLSPFVLFMPPKATASYGTGASGAAEGDRPREILVQHLLVKEDDQKLLLYLQQKISSGEDLSDLAVEYSLCPSKEEGGMLGWVRKGQMVPEFEEAAFTAPLNQVVRCKTKFGWHLLQVLSEREESILQDIQPDELHMKIQDPSFLDEAQLIDVREPDEVYAHIFFNHN* >Glyma14g04000.3 sequence type=predicted peptide gene model=Glyma14g04000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSMLRSVCQLRVGVATPKPCLHPSIFLFSLSLSHNTHTLTSFPRTFRFHPLSLPLSPFVLFMPPKATASYGTGASGAAEGDRPREILVQHLLVKEDDQKLLLYLQQKISSGEDLSDLAVEYSLCPSKEEGGMLGWVRKGQMVPEFEEAAFTAPLNQVVRCKTKFGWHLLQVLSEREESILQDIQPDELHMKIQDPSFLDEAQLIDVREPDEVAKASLPGFTVLPLRQFGSWGPEITTKFDPQKDTYVMGFRKVYNLSGGIHAYAVQVDPSVPTY*
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