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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06570 | AT | Annotation by Michelle Graham. TAIR10: phytoene desaturation 1 | chr1:2012015-2013543 REVERSE LENGTH=473 | SoyBase | E_val: 0 | ISS |
| GO:0009072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process | SoyBase | N/A | ISS |
| GO:0010189 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vitamin E biosynthetic process | SoyBase | N/A | ISS |
| GO:0010236 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastoquinone biosynthetic process | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003868 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4-hydroxyphenylpyruvate dioxygenase activity | SoyBase | N/A | ISS |
| GO:0016701 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | SoyBase | N/A | ISS |
| GO:0042802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: identical protein binding | SoyBase | N/A | ISS |
| KOG0638 | KOG | 4-hydroxyphenylpyruvate dioxygenase | JGI | ISS | |
| PTHR11959 | Panther | 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE | JGI | ISS | |
| PF00903 | PFAM | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | JGI | ISS | |
| UniRef100_I1M6Z4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Glycine max RepID=I1M6Z4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M6Z4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: 4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Glycine max RepID=I1M6Z4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g03410 not represented in the dataset |
Glyma14g03410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g45400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g030400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g03410.2 sequence type=transcript gene model=Glyma14g03410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGCAGCAGCATCACACCACACCAATGCCAATACCCATGTGCAACGAAATTCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCAACCTGGGTTTAAGCTCGTCGGTTTCAAAAACTTCGTCCGAACCAATCCTAAGTCGGACCGCTTTCAAGTCAACCGCTTCCACCACATCGAGTTCTGGTGCACCGATGCCACCAACGCCTCTCGCCGATTCTCTTGGGGACTTGGAATGCCTATTGTGGCAAAATCTGATCTCTCCACCGGAAACCAAATCCACGCCTCCTACCTCCTCCGCTCCGGCGACCTCTCCTTCCTCTTCTCCGCTCCTTACTCTCCCTCTCTCTCCGCCGGCTCCTCCGCTGCCTCCTCCGCCTCCATTCCCAGTTTCGACGCCGCCACCTGCCTTGCCTTCGCTGCCAAACACGGCTTCGGCGTCCGCGCCATCGCCTTGGAAGTCGCCGACGCGGAAGCCGCTTTCAGCGCCAGCGTCGCGAAAGGAGCCGAGCCGGCGTCGCCGCCGGTTCTCGTCGACGATCGCACCGGCTTCGCGGAGGTGCGCCTCTACGGCGACGTGGTGCTCCGCTACGTCAGCTACAAGGACGCCGCGCCGCAGGCGCCACACGCAGATCCGTCGCGGTGGTTCCTGCCGGGATTCGAGGCCGCGGCGTCGTCGTCTTCGTTTCCGGAGCTGGACTACGGGATCCGGCGGCTGGACCACGCCGTCGGGAACGTTCCGGAGCTGGCGCCGGCGGTGAGGTACCTGAAAGGCTTCAGCGGATTCCACGAGTTCGCGGAGTTCACCGCGGAGGACGTGGGAACGAGCGAGAGCGGGTTGAACTCGGTGGTTCTGGCGAACAACTCGGAGACGGTGTTGCTGCCGCTGAACGAGCCGGTTTACGGAACGAAGAGGAAGAGCCAGATTGAGACGTATTTGGAACACAACGAAGGTGCTGGTGTGCAGCACCTTGCGCTTGTTACTCACGACATCTTCACCACACTGAGAGAGATGAGAAAGCGAAGTTTCCTTGGTGGATTTGAGTTCATGCCTTCTCCTCCTCCCACCTATTACGCCAACCTCCACAACCGTGCCGCTGATGTGTTGACCGTTGACCAGATTAAGCAGTGTGAGGAGCTTGGGATTCTTGTTGACAGAGATGATCAGGGCACTCTGCTTCAGATTTTCACCAAGCCTGTTGGGGACAGGTTCTTCATTTTCTGCTTCTTTTTTTTTTGTTTTTTTAATCCCTGCTAAACAACTTTATTATAACTCTCACATTCTATTAGCCTAGCCTTGATGACTTTTAATTTACGTTAAACTGTGCTTTTTATTCTCCTACTTTGTTAGTTTTTTTTTTTATATAAAATTTTAATTTTTCAATTATAACTTTCAATAATTAACAAATGATGTACAGTATAGTGTTATGTCAGAATGGATGTACTTGATGTAGCAGTTCATCAGAGTGTTTCCCTCTACAAATTGTACTTTTGTCCCTTTCCTGACATAAAGTTTACGACATTGAAAAAATTGATAGATAAAAGTGCAATTTATTTATCTTCCGCTTTGAACTGATTGAAAGTGGTAAAAGTTAGATTAACAATTTGACAGTGTTTGTGTGTTGGAGGGTGGTGATTAGTTAAATGTGTTTTGTGTTGAATTGACAGGCCAACGATATTCATAGAGATAATTCAGAGGATCGGGTGCATGGTGGAGGATGAGGAAGGGAAGGTGTACCAGAAGGGTGCATGTGGGGGTTTTGGGAAAGGCAATTTTTCTGAGCTTTTCAAATCCATTGAAGAATATGAGAAGACTTTGGAAGCTAAAAGAACCGCGTAAGCACATTGGAAGAACACAAATACTCCTTTGTTGAAATGATTAATGAGGAATCAATGTGGCATAGGGTGTTTATACTCTATAATACATAGAATTACAATGATAGTGTCCTCCCTTGTATGAAAATGAAATCACAGAAACTTTTATGGATAGTATTTTTCTATTAAATACTTTGAGAGATTACTTGATTTGTTTCCTCTGACGGATACGAGGCGTCCCCAAGTACAACTTTATCTGCCTCTCTGCTTGTGAAGTGCACTTTGGGGGATTCCATGAGTAACTCATCTTGAATCTCCCTGTTCCACAGCATCCCACTTTTTGCAACATCATATCAGATAACAGCATAATAATATGAAGAGGATGAACTTTTTTGAGTGTATGAGTGAAAGGAAAAGATACAGAGAAAGAAAATGACAGATGTAATAAATAATATAATGGAAAATAAAAAGAAAT
>Glyma14g03410.1 sequence type=CDS gene model=Glyma14g03410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCCATGTACACTCCATCACTCTCCGCACCCTCCTCCAATCACATTCAACCAAGTGTCACACTCCCCTTATATATCACAACCACCAAGCTCAATCTCAAGCAGCAGCATCACACCACACCAATGCCAATACCCATGTGCAACGAAATTCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCAACCTGGGTTTAAGCTCGTCGGTTTCAAAAACTTCGTCCGAACCAATCCTAAGTCGGACCGCTTTCAAGTCAACCGCTTCCACCACATCGAGTTCTGGTGCACCGATGCCACCAACGCCTCTCGCCGATTCTCTTGGGGACTTGGAATGCCTATTGTGGCAAAATCTGATCTCTCCACCGGAAACCAAATCCACGCCTCCTACCTCCTCCGCTCCGGCGACCTCTCCTTCCTCTTCTCCGCTCCTTACTCTCCCTCTCTCTCCGCCGGCTCCTCCGCTGCCTCCTCCGCCTCCATTCCCAGTTTCGACGCCGCCACCTGCCTTGCCTTCGCTGCCAAACACGGCTTCGGCGTCCGCGCCATCGCCTTGGAAGTCGCCGACGCGGAAGCCGCTTTCAGCGCCAGCGTCGCGAAAGGAGCCGAGCCGGCGTCGCCGCCGGTTCTCGTCGACGATCGCACCGGCTTCGCGGAGGTGCGCCTCTACGGCGACGTGGTGCTCCGCTACGTCAGCTACAAGGACGCCGCGCCGCAGGCGCCACACGCAGATCCGTCGCGGTGGTTCCTGCCGGGATTCGAGGCCGCGGCGTCGTCGTCTTCGTTTCCGGAGCTGGACTACGGGATCCGGCGGCTGGACCACGCCGTCGGGAACGTTCCGGAGCTGGCGCCGGCGGTGAGGTACCTGAAAGGCTTCAGCGGATTCCACGAGTTCGCGGAGTTCACCGCGGAGGACGTGGGAACGAGCGAGAGCGGGTTGAACTCGGTGGTTCTGGCGAACAACTCGGAGACGGTGTTGCTGCCGCTGAACGAGCCGGTTTACGGAACGAAGAGGAAGAGCCAGATTGAGACGTATTTGGAACACAACGAAGGTGCTGGTGTGCAGCACCTTGCGCTTGTTACTCACGACATCTTCACCACACTGAGAGAGATGAGAAAGCGAAGTTTCCTTGGTGGATTTGAGTTCATGCCTTCTCCTCCTCCCACCTATTACGCCAACCTCCACAACCGTGCCGCTGATGTGTTGACCGTTGACCAGATTAAGCAGTGTGAGGAGCTTGGGATTCTTGTTGACAGAGATGATCAGGGCACTCTGCTTCAGATTTTCACCAAGCCTGTTGGGGACAGGCCAACGATATTCATAGAGATAATTCAGAGGATCGGGTGCATGGTGGAGGATGAGGAAGGGAAGGTGTACCAGAAGGGTGCATGTGGGGGTTTTGGGAAAGGCAATTTTTCTGAGCTTTTCAAATCCATTGAAGAATATGAGAAGACTTTGGAAGCTAAAAGAACCGCGTAA >Glyma14g03410.2 sequence type=CDS gene model=Glyma14g03410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCAATACCCATGTGCAACGAAATTCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCAACCTGGGTTTAAGCTCGTCGGTTTCAAAAACTTCGTCCGAACCAATCCTAAGTCGGACCGCTTTCAAGTCAACCGCTTCCACCACATCGAGTTCTGGTGCACCGATGCCACCAACGCCTCTCGCCGATTCTCTTGGGGACTTGGAATGCCTATTGTGGCAAAATCTGATCTCTCCACCGGAAACCAAATCCACGCCTCCTACCTCCTCCGCTCCGGCGACCTCTCCTTCCTCTTCTCCGCTCCTTACTCTCCCTCTCTCTCCGCCGGCTCCTCCGCTGCCTCCTCCGCCTCCATTCCCAGTTTCGACGCCGCCACCTGCCTTGCCTTCGCTGCCAAACACGGCTTCGGCGTCCGCGCCATCGCCTTGGAAGTCGCCGACGCGGAAGCCGCTTTCAGCGCCAGCGTCGCGAAAGGAGCCGAGCCGGCGTCGCCGCCGGTTCTCGTCGACGATCGCACCGGCTTCGCGGAGGTGCGCCTCTACGGCGACGTGGTGCTCCGCTACGTCAGCTACAAGGACGCCGCGCCGCAGGCGCCACACGCAGATCCGTCGCGGTGGTTCCTGCCGGGATTCGAGGCCGCGGCGTCGTCGTCTTCGTTTCCGGAGCTGGACTACGGGATCCGGCGGCTGGACCACGCCGTCGGGAACGTTCCGGAGCTGGCGCCGGCGGTGAGGTACCTGAAAGGCTTCAGCGGATTCCACGAGTTCGCGGAGTTCACCGCGGAGGACGTGGGAACGAGCGAGAGCGGGTTGAACTCGGTGGTTCTGGCGAACAACTCGGAGACGGTGTTGCTGCCGCTGAACGAGCCGGTTTACGGAACGAAGAGGAAGAGCCAGATTGAGACGTATTTGGAACACAACGAAGGTGCTGGTGTGCAGCACCTTGCGCTTGTTACTCACGACATCTTCACCACACTGAGAGAGATGAGAAAGCGAAGTTTCCTTGGTGGATTTGAGTTCATGCCTTCTCCTCCTCCCACCTATTACGCCAACCTCCACAACCGTGCCGCTGATGTGTTGACCGTTGACCAGATTAAGCAGTGTGAGGAGCTTGGGATTCTTGTTGACAGAGATGATCAGGGCACTCTGCTTCAGATTTTCACCAAGCCTGTTGGGGACAGGTTCTTCATTTTCTGCTTCTTTTTTTTTTGTTTTTTTAATCCCTGCTAA
>Glyma14g03410.1 sequence type=predicted peptide gene model=Glyma14g03410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPMYTPSLSAPSSNHIQPSVTLPLYITTTKLNLKQQHHTTPMPIPMCNEIQAQAQAQAQAQPGFKLVGFKNFVRTNPKSDRFQVNRFHHIEFWCTDATNASRRFSWGLGMPIVAKSDLSTGNQIHASYLLRSGDLSFLFSAPYSPSLSAGSSAASSASIPSFDAATCLAFAAKHGFGVRAIALEVADAEAAFSASVAKGAEPASPPVLVDDRTGFAEVRLYGDVVLRYVSYKDAAPQAPHADPSRWFLPGFEAAASSSSFPELDYGIRRLDHAVGNVPELAPAVRYLKGFSGFHEFAEFTAEDVGTSESGLNSVVLANNSETVLLPLNEPVYGTKRKSQIETYLEHNEGAGVQHLALVTHDIFTTLREMRKRSFLGGFEFMPSPPPTYYANLHNRAADVLTVDQIKQCEELGILVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRIGCMVEDEEGKVYQKGACGGFGKGNFSELFKSIEEYEKTLEAKRTA* >Glyma14g03410.2 sequence type=predicted peptide gene model=Glyma14g03410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPIPMCNEIQAQAQAQAQAQPGFKLVGFKNFVRTNPKSDRFQVNRFHHIEFWCTDATNASRRFSWGLGMPIVAKSDLSTGNQIHASYLLRSGDLSFLFSAPYSPSLSAGSSAASSASIPSFDAATCLAFAAKHGFGVRAIALEVADAEAAFSASVAKGAEPASPPVLVDDRTGFAEVRLYGDVVLRYVSYKDAAPQAPHADPSRWFLPGFEAAASSSSFPELDYGIRRLDHAVGNVPELAPAVRYLKGFSGFHEFAEFTAEDVGTSESGLNSVVLANNSETVLLPLNEPVYGTKRKSQIETYLEHNEGAGVQHLALVTHDIFTTLREMRKRSFLGGFEFMPSPPPTYYANLHNRAADVLTVDQIKQCEELGILVDRDDQGTLLQIFTKPVGDRFFIFCFFFFCFFNPC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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