Glyma14g03380 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma14g03380): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma14g03380): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma14g03380

Feature Type:	gene_model
Chromosome:	Gm14
Start:	2168435
stop:	2170380
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g03380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34480	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L18ae/LX family protein \| chr2:14532916-14534161 REVERSE LENGTH=178	SoyBase	E_val: 3.00E-120	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG0829	KOG	60S ribosomal protein L18A	JGI		ISS
PTHR10052	Panther	60S RIBOSOMAL PROTEIN L18A	JGI		ISS
PF01775	PFAM	Ribosomal L18ae/LX protein domain	JGI		ISS
UniRef100_I1M6Z0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L18a n=2 Tax=Glycine max RepID=I1M6Z0_SOYBN	SoyBase	E_val: 2.00E-129	ISS
UniRef100_I1M6Z0	UniRef	Annotation by Michelle Graham. Best UniRef hit: 60S ribosomal protein L18a n=2 Tax=Glycine max RepID=I1M6Z0_SOYBN	SoyBase	E_val: 2.00E-129	ISS

Expression Patterns of Glyma14g03380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g03380 not represented in the dataset	Glyma14g03380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g03380

Paralog	Evidence	Comments
Glyma02g45430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g03380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma14g03380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g03380

Limit To All Plant Sequences

>Glyma14g03380.2   sequence type=transcript   gene model=Glyma14g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAGGTCAACCTGGGCCTGGGGTTTCAGTTGGGCCCTACTAAGGAAGGCACCGGCCCATTAGGGTTCTAGTTTGCACATATGATCCTTTGTTGATTAGCTTGTAGCAGTGGAACAACAGTTGCGGAGTCAATCGAAATCGGCGGAGATGGTTGCCATGAGGGTGGGTAATGTTAATGGTTTTTGTGTTTGATTTAGTTTGCAGAGTGAGTTTGTGGAATTTAACATGTGAATGTGATTATGGTTGAAGCAGTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCTAGCCATCAATGAGATTTTTGAGAAGAATCCTACCAAGATTAAGAATTATGGAATTTGGCTGCGTTATCAGAGCCGCACTGGTTATCACAATATGTACAAGGAATACCGAGATACAACTCTGAATGGTGCAGTTGAGCATATGTACACTGAAATGGCATCTCGTCATAGGGTGAGGCATCCATGCATCCAGATAATTAAGACTGCCACCATCCCAGCTAAGCTGTGCAAAAGGGAGAGCACCAAGCAGTTTCACAATTCTAAAATCAAGTTCCCATTGGTGTTCAAGAAGATTAGGCCTCCAACTAGGAAGCTGAAGACAACATACAAGGCATCCAGGCCAAACCTATTTATGTGATTCAGTTAATGGAATTTCCCTGCTTTTTGATTCATTAAGTATAAAAAGGAAGAGCTTAGAGGTGATCCATGTAGTGACAAACTTCGTTGCCTGCAACCATAGTTTGCATTCTTTTAAGCTCTGAAGATTTTGTTTTTGAAAGATGGTGTTTTATTTAATTTTATATTTTTGCAGAGTCGTCTATTTTACTCATTCTGATGTATTCGATCAAGTTGCTTTTGAATTTAGCGATTACTTTTTTGTCTCGGTTCTGGGTTTATCACCTGTTAGTTGATATGTGCTCTCTGATTTTTGGTAATAAATATTTTCGACCAAGCATGGCTAATAAAGGACAAAGCTTTAAGTGTACAA

Coding sequences of Glyma14g03380

Limit To All Plant Sequences

>Glyma14g03380.1   sequence type=CDS   gene model=Glyma14g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCCATGAGGTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCTAGCCATCAATGAGATTTTTGAGAAGAATCCTACCAAGATTAAGAATTATGGAATTTGGCTGCGTTATCAGAGCCGCACTGGTTATCACAATATGTACAAGGAATACCGAGATACAACTCTGAATGGTGCAGTTGAGCATATGTACACTGAAATGGCATCTCGTCATAGGGTGAGGCATCCATGCATCCAGATAATTAAGACTGCCACCATCCCAGCTAAGCTGTGCAAAAGGGAGAGCACCAAGCAGTTTCACAATTCTAAAATCAAGTTCCCATTGGTGTTCAAGAAGATTAGGCCTCCAACTAGGAAGCTGAAGACAACATACAAGGCATCCAGGCCAAACCTATTTATGTGA

>Glyma14g03380.2   sequence type=CDS   gene model=Glyma14g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCTAGCCATCAATGAGATTTTTGAGAAGAATCCTACCAAGATTAAGAATTATGGAATTTGGCTGCGTTATCAGAGCCGCACTGGTTATCACAATATGTACAAGGAATACCGAGATACAACTCTGAATGGTGCAGTTGAGCATATGTACACTGAAATGGCATCTCGTCATAGGGTGAGGCATCCATGCATCCAGATAATTAAGACTGCCACCATCCCAGCTAAGCTGTGCAAAAGGGAGAGCACCAAGCAGTTTCACAATTCTAAAATCAAGTTCCCATTGGTGTTCAAGAAGATTAGGCCTCCAACTAGGAAGCTGAAGACAACATACAAGGCATCCAGGCCAAACCTATTTATGTGA

Predicted protein sequences of Glyma14g03380

Limit To All Plant Sequences

>Glyma14g03380.1   sequence type=predicted peptide   gene model=Glyma14g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAMRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRHPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKIRPPTRKLKTTYKASRPNLFM*

>Glyma14g03380.2   sequence type=predicted peptide   gene model=Glyma14g03380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRHPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKIRPPTRKLKTTYKASRPNLFM*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain