SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G67930 | AT | Annotation by Michelle Graham. TAIR10: Golgi transport complex protein-related | chr1:25474218-25477332 REVERSE LENGTH=832 | SoyBase | E_val: 0 | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| KOG2211 | KOG | Predicted Golgi transport complex 1 protein | JGI | ISS | |
| PTHR13228 | Panther | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5 | JGI | ISS | |
| PF10392 | PFAM | Golgi transport complex subunit 5 | JGI | ISS | |
| UniRef100_G7KD42 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Conserved oligomeric Golgi complex subunit n=1 Tax=Medicago truncatula RepID=G7KD42_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M6Y5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M6Y5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g03340 not represented in the dataset |
Glyma14g03340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g45580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g029500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g03340.2 sequence type=transcript gene model=Glyma14g03340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CATGAATGGTAAGTAAATTATAAAAAAAAAATAACACAATCGCACAAAACAATTTCAGAAGCAAGAAGTTACATAAAACAAAAGAAATAGAGTAACTATCCTATTCTAGTGTCTGTACTAGACTAAACGACCTTCGTCGCTCGCTCGCGAAAACGAAAATCACAATGGCGTCACCAGCGGCGGCGAGGACGCCGGTCTCTACCGGCGCATCTCCGATGCAACGCCTCTCCACCTTCAAAAACCCCTCCTCCGCCGCCGCCTCCACCGCCACCACCACCCCCTCCTCCTCCGCCCTAGACTCTCTGGCCTCGGATCCCATCTTCTCCGCCTTCCTCTCTCCTTCCTTCTCCTCCACCTCCTTCTCCTCCGCCGCGCTCTCCTCCGGCTCCCCGGCCTCCACCGCGGAGAAGCTCCACCACGCGATCCGCCTCCTGGAGAACCAGCTCCGCTCGGAAGTCCTCTCGCGGCACCACGACCTCCTCTCGCAGCTCTCGTCCCTCCACCACGCGGACCACGCCCTCTCCACCCTCAGATCCGCGCTCTCCTCGCTCCAGTCCTCCGTCCGCCGCCTCCGCTCCGAGCTCTCCGACCCTCACCGCTCCGTCGCCGCCAAAACCGCCCAGCTCTCCAACCTCCACCGCACCACCGAGCTCCTCCAGCACTCCATCCGCGCCCTCCGCCTCTCCAAGAAGCTCCGCGACCTCATGGCCGCCGCCGACCCCGAAAAACTCGATCTCGCCAAGGCCGCCCAGCTCCACTTCGAGATCCTCAGTCTCTGCGACGAGTACGACCTCGTCGGCATCGACGCCGTCGACGAAGAGCTCAATTGGGTCAGGGAAACGGGAGATTTGCTTCGCAGCGAGGCGATGAAGGTTCTGGAACGCGGAATGGAAGGGTTGAACCAGGCAGAGGTTGGGACCGGGTTGCAGGTTTTCTACAATCTTGGGGAATTGAAGGGCACTGTGGAGCAGGTGGTGAATAAGTATAAGGGTTTGGGTGCTAAGAGTGTCACTGTGGCGTTGGACATGAAGACCATTTCGGGTGGAAGCGGGTACGGTCCTGGTGGGATTAGAGGATCTGGAACGCCCCACATTGGAGGAGGGGCTAAAGCTAGAGAGGCTCTCTGGCATAGGTTGGGAAATTGCATGGATCAGTTGCATTCCATTGCTGTCGCTGTGTGGCATTTGCAGAGGGTGCTCTCTAAAAAACGTGATCCCTTTACACATGTTTTGTTGCTTGATGAGGTCATTCAGATATCCACTGGTCCTGAATCACGTCAAGTAAATGGTCCTGCAACACCAGCACAGCTCAAGAACTTTACATTGTGTCAGCATCTGCAAGATGTTCATACACGGATATCATCTATACTTAAAGGAATGCCCAGTATTGCTGCAGATGTGTTGTCTGCTTCATTAGGTGTCATATATGGTGTTGCCTGTGATTCTGTAACAGCTTTATTCCAAGCAATGCTGGATCGTCTTGAGTCTTGCATATTACAAATACATGATCATAACTTTGGAGTGCTCGGAATGGATGCTGCTATGGACAACAATGCATCACCTTACATGGAGGAGCTCCAGAAGTGTATTCTTCACTTTCGCAGTGAGTTTCTTTCTAGGTTGTTGCCTTCCAGGAATTCAACAGCTCCTGGTACAGAGAACATATGCACCAGGCTTGTCCAGAGCATGGCTTCACGTGTTCTAGTATTCTTCATCCGACACGCATCTCTTGTGAGACCACTTTCAGAATCAGGCAAGTTGAGGATGGCTAGGGATATGGCTGAATTGGAGCTAGCTGTGGGTCAAAATTTGTTCCCTGTCGAGCAACTTGGTGCACCATATCGCGCACTTAGAGCATTTCGTCCTCTTATTTTCTTGGAAACGTCCCAGCTTGCATCATCACCACTTCTTCAAGATCTGCCACCAAATGTCATACTTCATCATCTGTACACCCGTGCTCCTGAAGAATTGCAGTCACCGCTGCAAAGGAACAAACTAACACCATTGCAGTATTCACTATGGCTAGATTCTCAATGGGAAGATCAAATCTGGAAGGGCATCAAAGCAACACTTGATGATTATGCTGCAAATGTGAGGAGCAGAGGAGATAAGGAGTTTAGCCCTGTTTATCCTCTTATGCTTCAATTGGGTTCTTCTTTGATTGAAAAAGATCAGACTTCCTCAAAGTCATGATCCAGTAAAGAATTTGTAGTCTAGCAAATTAAACCACATCTGGTACTTCCCATATTGCTTCTTGAAAGTTATTGAAAAGAGTTTGGTTGTGGAAACATGAGGAAGAGGCCTGCTACTTCTGCTAGCAAGCATGAGGTACAAACATTTAAATGATTAAATTTTTTTTCTTTCTTTCATTTCTATTCATCTTCCTTCCTCCTTCCTTCCTTCCTTTTTTTTTTTTTTTCCTTTTTAAATGAAATTACTGTTATTGGTTAATCTCGAATTTCTTGATTATTTGTTGTTACTTTCAATGTAGAGAAATATAACCTTTTCATGGAATGTAGAAACAAGTGCTGTTGTATACTCCCCATGATTAATAGACATGTAAACGATTATTTCATCATGCCTTACGTATGCCTGCCAATATCTTCATGTATAACGTAAACTATCTTTATCTAATTATTCGTTAATTTATTTTTCTCAACAAGTTTGTTGCAGCTTCGCAATATTTCAC
>Glyma14g03340.1 sequence type=CDS gene model=Glyma14g03340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCACCAGCGGCGGCGAGGACGCCGGTCTCTACCGGCGCATCTCCGATGCAACGCCTCTCCACCTTCAAAAACCCCTCCTCCGCCGCCGCCTCCACCGCCACCACCACCCCCTCCTCCTCCGCCCTAGACTCTCTGGCCTCGGATCCCATCTTCTCCGCCTTCCTCTCTCCTTCCTTCTCCTCCACCTCCTTCTCCTCCGCCGCGCTCTCCTCCGGCTCCCCGGCCTCCACCGCGGAGAAGCTCCACCACGCGATCCGCCTCCTGGAGAACCAGCTCCGCTCGGAAGTCCTCTCGCGGCACCACGACCTCCTCTCGCAGCTCTCGTCCCTCCACCACGCGGACCACGCCCTCTCCACCCTCAGATCCGCGCTCTCCTCGCTCCAGTCCTCCGTCCGCCGCCTCCGCTCCGAGCTCTCCGACCCTCACCGCTCCGTCGCCGCCAAAACCGCCCAGCTCTCCAACCTCCACCGCACCACCGAGCTCCTCCAGCACTCCATCCGCGCCCTCCGCCTCTCCAAGAAGCTCCGCGACCTCATGGCCGCCGCCGACCCCGAAAAACTCGATCTCGCCAAGGCCGCCCAGCTCCACTTCGAGATCCTCAGTCTCTGCGACGAGTACGACCTCGTCGGCATCGACGCCGTCGACGAAGAGCTCAATTGGGTCAGGGAAACGGGAGATTTGCTTCGCAGCGAGGCGATGAAGGTTCTGGAACGCGGAATGGAAGGGTTGAACCAGGCAGAGGTTGGGACCGGGTTGCAGGTTTTCTACAATCTTGGGGAATTGAAGGGCACTGTGGAGCAGGTGGTGAATAAGTATAAGGGTTTGGGTGCTAAGAGTGTCACTGTGGCGTTGGACATGAAGACCATTTCGGGTGGAAGCGGGTACGGTCCTGGTGGGATTAGAGGATCTGGAACGCCCCACATTGGAGGAGGGGCTAAAGCTAGAGAGGCTCTCTGGCATAGGTTGGGAAATTGCATGGATCAGTTGCATTCCATTGCTGTCGCTGTGTGGCATTTGCAGAGGGTGCTCTCTAAAAAACGTGATCCCTTTACACATGTTTTGTTGCTTGATGAGGTCATTCAGGAAGGTGATCCCATGCTAACTGATCGAGTGTGGGAGGCCATTACAAAGGCTTTTGCAAGCCAAATGAAGTCTGCTTTCACTGGATCAAGTTTTGTTAAAGAGATTTTTACAATGGGATATCCAAAGCTTTACTCCATGATAGAGAATCTACTTGAAAGAATTTCACATGACACAGATATCAAAGGAGTGTTACCAGCTATCAATTTGTCTGGAAAAGAGCAGATAATTTCAGCTGTCGAAATATTCCAGAATGCATTTTTGGCTCATTGCTTGAGTCGCCTTTCAGATCTAGTGAATTCTGTATTTCCAATGTCCAGTCGTGGTAGTGTTCCCTCCAAGGAACAAATATCAAGAATTATATCACGCATTCAGGAAGAGATAGAAACTGTTCAGATGGATGCACGCTTAACTCTTCTTGTTTTGCGTGAAATTGGCAAGGTTTTAATTCTTCTTGCAGAACGAGCTGAATACCAGATATCCACTGGTCCTGAATCACGTCAAGTAAATGGTCCTGCAACACCAGCACAGCTCAAGAACTTTACATTGTGTCAGCATCTGCAAGATGTTCATACACGGATATCATCTATACTTAAAGGAATGCCCAGTATTGCTGCAGATGTGTTGTCTGCTTCATTAGGTGTCATATATGGTGTTGCCTGTGATTCTGTAACAGCTTTATTCCAAGCAATGCTGGATCGTCTTGAGTCTTGCATATTACAAATACATGATCATAACTTTGGAGTGCTCGGAATGGATGCTGCTATGGACAACAATGCATCACCTTACATGGAGGAGCTCCAGAAGTGTATTCTTCACTTTCGCAGTGAGTTTCTTTCTAGGTTGTTGCCTTCCAGGAATTCAACAGCTCCTGGTACAGAGAACATATGCACCAGGCTTGTCCAGAGCATGGCTTCACGTGTTCTAGTATTCTTCATCCGACACGCATCTCTTGTGAGACCACTTTCAGAATCAGGCAAGTTGAGGATGGCTAGGGATATGGCTGAATTGGAGCTAGCTGTGGGTCAAAATTTGTTCCCTGTCGAGCAACTTGGTGCACCATATCGCGCACTTAGAGCATTTCGTCCTCTTATTTTCTTGGAAACGTCCCAGCTTGCATCATCACCACTTCTTCAAGATCTGCCACCAAATGTCATACTTCATCATCTGTACACCCGTGCTCCTGAAGAATTGCAGTCACCGCTGCAAAGGAACAAACTAACACCATTGCAGTATTCACTATGGCTAGATTCTCAATGGGAAGATCAAATCTGGAAGGGCATCAAAGCAACACTTGATGATTATGCTGCAAATGTGAGGAGCAGAGGAGATAAGGAGTTTAGCCCTGTTTATCCTCTTATGCTTCAATTGGGTTCTTCTTTGATTGAAAAAGATCAGACTTCCTCAAAGTCATGA >Glyma14g03340.2 sequence type=CDS gene model=Glyma14g03340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCACCAGCGGCGGCGAGGACGCCGGTCTCTACCGGCGCATCTCCGATGCAACGCCTCTCCACCTTCAAAAACCCCTCCTCCGCCGCCGCCTCCACCGCCACCACCACCCCCTCCTCCTCCGCCCTAGACTCTCTGGCCTCGGATCCCATCTTCTCCGCCTTCCTCTCTCCTTCCTTCTCCTCCACCTCCTTCTCCTCCGCCGCGCTCTCCTCCGGCTCCCCGGCCTCCACCGCGGAGAAGCTCCACCACGCGATCCGCCTCCTGGAGAACCAGCTCCGCTCGGAAGTCCTCTCGCGGCACCACGACCTCCTCTCGCAGCTCTCGTCCCTCCACCACGCGGACCACGCCCTCTCCACCCTCAGATCCGCGCTCTCCTCGCTCCAGTCCTCCGTCCGCCGCCTCCGCTCCGAGCTCTCCGACCCTCACCGCTCCGTCGCCGCCAAAACCGCCCAGCTCTCCAACCTCCACCGCACCACCGAGCTCCTCCAGCACTCCATCCGCGCCCTCCGCCTCTCCAAGAAGCTCCGCGACCTCATGGCCGCCGCCGACCCCGAAAAACTCGATCTCGCCAAGGCCGCCCAGCTCCACTTCGAGATCCTCAGTCTCTGCGACGAGTACGACCTCGTCGGCATCGACGCCGTCGACGAAGAGCTCAATTGGGTCAGGGAAACGGGAGATTTGCTTCGCAGCGAGGCGATGAAGGTTCTGGAACGCGGAATGGAAGGGTTGAACCAGGCAGAGGTTGGGACCGGGTTGCAGGTTTTCTACAATCTTGGGGAATTGAAGGGCACTGTGGAGCAGGTGGTGAATAAGTATAAGGGTTTGGGTGCTAAGAGTGTCACTGTGGCGTTGGACATGAAGACCATTTCGGGTGGAAGCGGGTACGGTCCTGGTGGGATTAGAGGATCTGGAACGCCCCACATTGGAGGAGGGGCTAAAGCTAGAGAGGCTCTCTGGCATAGGTTGGGAAATTGCATGGATCAGTTGCATTCCATTGCTGTCGCTGTGTGGCATTTGCAGAGGGTGCTCTCTAAAAAACGTGATCCCTTTACACATGTTTTGTTGCTTGATGAGGTCATTCAGATATCCACTGGTCCTGAATCACGTCAAGTAAATGGTCCTGCAACACCAGCACAGCTCAAGAACTTTACATTGTGTCAGCATCTGCAAGATGTTCATACACGGATATCATCTATACTTAAAGGAATGCCCAGTATTGCTGCAGATGTGTTGTCTGCTTCATTAGGTGTCATATATGGTGTTGCCTGTGATTCTGTAACAGCTTTATTCCAAGCAATGCTGGATCGTCTTGAGTCTTGCATATTACAAATACATGATCATAACTTTGGAGTGCTCGGAATGGATGCTGCTATGGACAACAATGCATCACCTTACATGGAGGAGCTCCAGAAGTGTATTCTTCACTTTCGCAGTGAGTTTCTTTCTAGGTTGTTGCCTTCCAGGAATTCAACAGCTCCTGGTACAGAGAACATATGCACCAGGCTTGTCCAGAGCATGGCTTCACGTGTTCTAGTATTCTTCATCCGACACGCATCTCTTGTGAGACCACTTTCAGAATCAGGCAAGTTGAGGATGGCTAGGGATATGGCTGAATTGGAGCTAGCTGTGGGTCAAAATTTGTTCCCTGTCGAGCAACTTGGTGCACCATATCGCGCACTTAGAGCATTTCGTCCTCTTATTTTCTTGGAAACGTCCCAGCTTGCATCATCACCACTTCTTCAAGATCTGCCACCAAATGTCATACTTCATCATCTGTACACCCGTGCTCCTGAAGAATTGCAGTCACCGCTGCAAAGGAACAAACTAACACCATTGCAGTATTCACTATGGCTAGATTCTCAATGGGAAGATCAAATCTGGAAGGGCATCAAAGCAACACTTGATGATTATGCTGCAAATGTGAGGAGCAGAGGAGATAAGGAGTTTAGCCCTGTTTATCCTCTTATGCTTCAATTGGGTTCTTCTTTGATTGAAAAAGATCAGACTTCCTCAAAGTCATGA
>Glyma14g03340.1 sequence type=predicted peptide gene model=Glyma14g03340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASPAAARTPVSTGASPMQRLSTFKNPSSAAASTATTTPSSSALDSLASDPIFSAFLSPSFSSTSFSSAALSSGSPASTAEKLHHAIRLLENQLRSEVLSRHHDLLSQLSSLHHADHALSTLRSALSSLQSSVRRLRSELSDPHRSVAAKTAQLSNLHRTTELLQHSIRALRLSKKLRDLMAAADPEKLDLAKAAQLHFEILSLCDEYDLVGIDAVDEELNWVRETGDLLRSEAMKVLERGMEGLNQAEVGTGLQVFYNLGELKGTVEQVVNKYKGLGAKSVTVALDMKTISGGSGYGPGGIRGSGTPHIGGGAKAREALWHRLGNCMDQLHSIAVAVWHLQRVLSKKRDPFTHVLLLDEVIQEGDPMLTDRVWEAITKAFASQMKSAFTGSSFVKEIFTMGYPKLYSMIENLLERISHDTDIKGVLPAINLSGKEQIISAVEIFQNAFLAHCLSRLSDLVNSVFPMSSRGSVPSKEQISRIISRIQEEIETVQMDARLTLLVLREIGKVLILLAERAEYQISTGPESRQVNGPATPAQLKNFTLCQHLQDVHTRISSILKGMPSIAADVLSASLGVIYGVACDSVTALFQAMLDRLESCILQIHDHNFGVLGMDAAMDNNASPYMEELQKCILHFRSEFLSRLLPSRNSTAPGTENICTRLVQSMASRVLVFFIRHASLVRPLSESGKLRMARDMAELELAVGQNLFPVEQLGAPYRALRAFRPLIFLETSQLASSPLLQDLPPNVILHHLYTRAPEELQSPLQRNKLTPLQYSLWLDSQWEDQIWKGIKATLDDYAANVRSRGDKEFSPVYPLMLQLGSSLIEKDQTSSKS* >Glyma14g03340.2 sequence type=predicted peptide gene model=Glyma14g03340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASPAAARTPVSTGASPMQRLSTFKNPSSAAASTATTTPSSSALDSLASDPIFSAFLSPSFSSTSFSSAALSSGSPASTAEKLHHAIRLLENQLRSEVLSRHHDLLSQLSSLHHADHALSTLRSALSSLQSSVRRLRSELSDPHRSVAAKTAQLSNLHRTTELLQHSIRALRLSKKLRDLMAAADPEKLDLAKAAQLHFEILSLCDEYDLVGIDAVDEELNWVRETGDLLRSEAMKVLERGMEGLNQAEVGTGLQVFYNLGELKGTVEQVVNKYKGLGAKSVTVALDMKTISGGSGYGPGGIRGSGTPHIGGGAKAREALWHRLGNCMDQLHSIAVAVWHLQRVLSKKRDPFTHVLLLDEVIQISTGPESRQVNGPATPAQLKNFTLCQHLQDVHTRISSILKGMPSIAADVLSASLGVIYGVACDSVTALFQAMLDRLESCILQIHDHNFGVLGMDAAMDNNASPYMEELQKCILHFRSEFLSRLLPSRNSTAPGTENICTRLVQSMASRVLVFFIRHASLVRPLSESGKLRMARDMAELELAVGQNLFPVEQLGAPYRALRAFRPLIFLETSQLASSPLLQDLPPNVILHHLYTRAPEELQSPLQRNKLTPLQYSLWLDSQWEDQIWKGIKATLDDYAANVRSRGDKEFSPVYPLMLQLGSSLIEKDQTSSKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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