SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04920 | AT | Annotation by Michelle Graham. TAIR10: sucrose phosphate synthase 3F | chr1:1391674-1395756 REVERSE LENGTH=1062 | SoyBase | E_val: 0 | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0005985 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sucrose metabolic process | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0019375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0046524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sucrose-phosphate synthase activity | SoyBase | N/A | ISS |
| KOG0853 | KOG | Glycosyltransferase | JGI | ISS | |
| PTHR12526 | Panther | GLYCOSYLTRANSFERASE | JGI | ISS | |
| PTHR12526:SF28 | Panther | SUCROSE PHOSPHATE SYNTASE | JGI | ISS | |
| PF00534 | PFAM | Glycosyl transferases group 1 | JGI | ISS | |
| PF00862 | PFAM | Sucrose synthase | JGI | ISS | |
| PF05116 | PFAM | Sucrose-6F-phosphate phosphohydrolase | JGI | ISS | |
| UniRef100_G7KD49 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sucrose-phosphate synthase n=1 Tax=Medicago truncatula RepID=G7KD49_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M6Y2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M6Y2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g03300 not represented in the dataset |
Glyma14g03300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g029100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g03300.1 sequence type=CDS gene model=Glyma14g03300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGCAATGAATGGATTAATGGGTACCTTGAGGCTATACTATCCACTGGAACTGGGGCTGGCACCGTTGATGAGCAAATGCAAAAAGCAGTGACTCCACCAGAAAGTGGACATTTTAATCCCACACAGTACTTTGTGGAAGAAGTGGTGTCTAGTGTTGACGAGTCTGACCTTCACCGTACATGGATCAAGGTGGTTGCCACTCGTAACACCAGGGAACGCAGCTCAAGGTTGGAGAACATGTGCTGGCGAATTTGGCATCTTGCCCGCAAGAAGAAACAGTTGGAAGGGGAGGAGCTGCAGAGATTTGCAAACAGAAGATGGGAGAGAGAACAAGGACGCAGGGATGCAACAGAGGATCTGTCTGAAGAGTTGTCAGAAGGGGAAAAAGGAGATGGCGTTGGGGAGATGATACAAATTGAGACATCAAAGAAAAATTTCCAGAGGCAGATTTCCAACTTGGAAGTATGGTCTGATGACAAAAAGGAAAAGAAGCTTTACATTGTCCTCGTAAGTTTGCATGGTTTGGTTCGAGGAGAAAACATGGAGCTTGGTCGAGATTCTGATACTGGTGGACAGATTAAATATGTGGTAGAACTTGCTCGTGCACTAGCAAAAATGCCAGGAGTGTATAGAGTAGACCTCTTCACACGCCAAATCTCATCTCCTGAAATTGATTGGAGCTATGGAGAACCTACAGAAATGCTAACTGCAGGCACAGATGAGGATGATGATAACATTGGGGAGAGCAGTGGTGCATACATCATAAGAATACCCTTTGGTCCACGTGAAAAATATCTACAGAAAGAACTTCTTTGGCCCCATATTCAAGAATTTGTAGATGGGGCTTTAGCTCACATTCTCAATATGTCAAAAGTATTGGGTGAACAAGTTAGCGGGGGGAAACCAGTGTGGCCACACGTTATTCATGGACATTATGCTGATGCTGGAGATAGTGCTGCTCTTCTTTCAGGTGCCTTGAATGTGCCAATGGTGCTCACTGGTCATTCACTTGGAAGAAACAAGCTAGAACAGCTTCTTAAGCAAGGGCGTCAATCGAAGGAGGATATCAATTCAACATATAAGATAATGAGGAGAATAGAAGCAGAAGAGCTTTCCCTAGATGCTGCTGAACTTGTTATCACTAGCACAAGGCAAGAAATTGATGAGCAATGGGGACTTTATGATGGGTTTGATGTCAAGCTTGAGAAAGTTTTGCGTGCTCGAGTTAGACGTGGTGTCAATTGTCATGGCCGATTCATGCCAAGGATGGCGGTTATCCCGCCTGGTATGGACTTTAGCAATGTTGTGACACAAGAAGATGGCCCTGAAGTTGACGGGGAGCTCACACAGCTTACTCGTGGTGTTGATGGGTCTTCAACAAAGGCTCTACCTACAATCTGGTTAGAAGTGATGCGTTTCTTCACAAATCCTCATAAACCTATGATCTTAGCCTTGTCAAGGCCAGATCCGAAAAAGAACATAACCACTTTGTTAAAAGCCTTTGGAGAATGCCGCCCCTTAAGAGAATTAGCTAATCTTACGCTTATAATGGGAAACAGGGATGACATAGATGAAATGTCCTCTGGCAATGCTAGTGTGCTCACAACAGTGTTGAAATTGATTGATAAGTATGACCTGTACGGGCAAGTGGCATACCCAAAACATCACAATCAATCTGATGTTCCAGAGATATACAGATTTGCTGCAAAAACAAAGGGTGTTTTCATAAATCCGGCTTTAGTGGAACCCTTTGGCCTTACTTTAATTGAGGCAGCTGCCCATGGACTTCCAATGGTGGCCACTAAAAATGGGGGACCTGTGGACATTCATCGGGCCCTGAACAATGGTTTGCTTGTGGACCCTCATGATGACATAGCAATTGCCGATGCATTGGTGAAGTTGTTGTCAGAGAAAAACATGTGGCATGAGTGCAGGAAGAACGGTTGGAAGAACATACACCTTTTCTCATGGCCTGAACACTGTCGCACTTACTTGACCCGGGTGGCTGCCTGTAGGATGAGGCATCCACAATGGCAAACCAACAATCCAGAGGATGATAAAGCTGTTGAAGAAGAAGAGTCTTTCAACGATTCGCTCAAGGACGAACACGACATGTCCCTTAGGCTCTCAATTGATGGTGACTTGGCTGCAGCAAGTGGAGGCACTGGTCTAGATATGCAAGACCAAGTTAAACGCATCCTAAGCAAGATAAGGAAGACAGATTCTGGCTCAAATGGTAATGGTGGTGGAAATATCAATATGCTGCTTGACAATGTAACGAGCACTAGCACTAGCACTAACACTAGCAAATATCCTCTATTGAGAAGAAGGCGTAGGTTGATTGTTATAGCACTTGATTTGTATGACAATAATGGAGCTCCGGAGAAGAAAATGATTGAGATGGTGCAAAAGATAATTAAAGCTGTGCAACTAGACCCTCAAACTGCTAGAGTTACAGGGTTTGCTTTATCAACTGCTATGCCAGTGATAGAAACAGTAGAGTTCCTAACATCAGGCAATGTTCAAGTGAATGAGTTTGATGCTTTAATTTGCAGTAGTGGAAGTCAAGTTTACTACCCTGGCATCAATACAGAAGAAGGAAAGCTTTTGCCTGATCCAGATTATGAGGTACATATTGACTATCGTTGGGGGTGTGAAGGTCTTAAGAAAACCATTTGGAAACTTATGAATGGTGATGAGAACAGCCCCATTGAGGAAGATCTCAAATCCAGCAATGCACATTGCATCTCATACAAAATAAAGGATCTTAGTAAGGCAAAAAAAGTTGATGAGTTGAGGCAGAAGCTTAGGATGAGAGGTCTACGTTGTCATCCTATGTACTGCAGGGGGTCATCTAGAATGCATGTGATTCCTCTTCTTGCATCTAGAGCCCAGGCACTCAGGTATCTCTTTGTACGTTGGAGGTTGAACGTTGCAAACATGTACGTCATCCTTGGAGAAACCGGGGACACGGATTATGAGGAGATGATTTCTGGAACTCACAAGACCATAATCATGAAGGGAGTGGTGTCTAAGGGTTCAGAAGAGTTACTAAGAGGTCCAGGAAGCTACCAAAGAGATGATATTGTCCCAAATGAGAGCCCTCTTGTTGCATCCATTACTGAAACAACACATGAAAACATTGCTAATGCTTTGAAGCAACTTTCCAAATCTGGAGGAATCTGA
>Glyma14g03300.1 sequence type=predicted peptide gene model=Glyma14g03300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGNEWINGYLEAILSTGTGAGTVDEQMQKAVTPPESGHFNPTQYFVEEVVSSVDESDLHRTWIKVVATRNTRERSSRLENMCWRIWHLARKKKQLEGEELQRFANRRWEREQGRRDATEDLSEELSEGEKGDGVGEMIQIETSKKNFQRQISNLEVWSDDKKEKKLYIVLVSLHGLVRGENMELGRDSDTGGQIKYVVELARALAKMPGVYRVDLFTRQISSPEIDWSYGEPTEMLTAGTDEDDDNIGESSGAYIIRIPFGPREKYLQKELLWPHIQEFVDGALAHILNMSKVLGEQVSGGKPVWPHVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRNKLEQLLKQGRQSKEDINSTYKIMRRIEAEELSLDAAELVITSTRQEIDEQWGLYDGFDVKLEKVLRARVRRGVNCHGRFMPRMAVIPPGMDFSNVVTQEDGPEVDGELTQLTRGVDGSSTKALPTIWLEVMRFFTNPHKPMILALSRPDPKKNITTLLKAFGECRPLRELANLTLIMGNRDDIDEMSSGNASVLTTVLKLIDKYDLYGQVAYPKHHNQSDVPEIYRFAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHRALNNGLLVDPHDDIAIADALVKLLSEKNMWHECRKNGWKNIHLFSWPEHCRTYLTRVAACRMRHPQWQTNNPEDDKAVEEEESFNDSLKDEHDMSLRLSIDGDLAAASGGTGLDMQDQVKRILSKIRKTDSGSNGNGGGNINMLLDNVTSTSTSTNTSKYPLLRRRRRLIVIALDLYDNNGAPEKKMIEMVQKIIKAVQLDPQTARVTGFALSTAMPVIETVEFLTSGNVQVNEFDALICSSGSQVYYPGINTEEGKLLPDPDYEVHIDYRWGCEGLKKTIWKLMNGDENSPIEEDLKSSNAHCISYKIKDLSKAKKVDELRQKLRMRGLRCHPMYCRGSSRMHVIPLLASRAQALRYLFVRWRLNVANMYVILGETGDTDYEEMISGTHKTIIMKGVVSKGSEELLRGPGSYQRDDIVPNESPLVASITETTHENIANALKQLSKSGGI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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