Glyma14g03280 - SoyBase

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Report for Sequence Feature Glyma14g03280

Feature Type:	gene_model
Chromosome:	Gm14
Start:	2101859
stop:	2104895
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g03280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18170	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 28 \| chr4:10061508-10062691 FORWARD LENGTH=318	SoyBase	E_val: 1.00E-61	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_I3RQB6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY71 n=1 Tax=Vitis amurensis RepID=I3RQB6_9ROSI	SoyBase	E_val: 9.00E-98	ISS
UniRef100_UPI000233C0F9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C0F9 related cluster n=1 Tax=unknown RepID=UPI000233C0F9	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma14g03280

Locus	Gene Symbol	Protein Name
	WRKY141	WRKY Transcription Factor

Expression Patterns of Glyma14g03280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g03280

Paralog	Evidence	Comments
Glyma02g45530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g03280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g028900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g03280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g03280

Limit To All Plant Sequences

>Glyma14g03280.1   sequence type=CDS   gene model=Glyma14g03280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAATGAGAAGGACCGTTTTTATGATCCCTTTCATTACAACCACCACCATGATCAGCAACTCAACCACTCATCATCAAGCTTTCCATTCTTTAGGGACAACAACAACAACTCAGCACCAATTGGCTCACAATTAAACTTTCAAGGGTTTGATGATCATAATAACCCTTCTTCTCATCATCACACCACTTTCACTGACTGCTTACATGGTTCCATGGATTACAACACCCTCTCAAGAGCCTTTGACATGTCTTGTTCATCTTCTGAAGTGATCTCCTCCAATATTGTTGAAAACCCCAAGAAGCCTAGTGCAGGAGGAGACTCTGTGGGGGTCAGTGGGAACCAACAATCAACACCTAATTCATCTGTGTCTTCATCATCCAATGAAGCTGAAGCAATCATAGAAGAAGACTCAACCAAGAGCCAGAAAGATAAGCAGCCAAAAGGGTGTGAAGAAGGAGATGAAAAGTCTAAGAAAGAGAACAAACCCAAAAAGAAAGAGAAAAAGCCAAGAGAGCCTCGCTTTTCCTTCTTGACTAAAAGTGAGATCGATCACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCGGTCAAGAATAGTCCATACCCAAGGAGCTATTATAGATGCACGAGTCAGAAGTGCGGTGTAAAGAAAAGGGTGGAGAGATCATTCCAGGACCCAACAATCGTGATCACAACATATGAAGGGCAACACAACCATCACTGTCCAGCAACACTAAGGGGCAGTGCTGCAAGCATGTTGTCATCACCTTCCTTTTTTGGTTCCTCTTATATGGCGTCAAGCTTACCCCAAGATTTTCTTGCTCAGTTGCTTCCAAGTTATAGCCAAAATGATCACCAAAATCCAATGTTTAACCAAAACCTTTCCCATAATCTCCATCCCCAGCCTCAACAGCAGCAGCAGTTCCAACTCTCTCGTGACTATGGTTTGTTGCAAGACCTACTACCATCATTCCCTGGCAAACAAGTGCCATGA

Predicted protein sequences of Glyma14g03280

Limit To All Plant Sequences

>Glyma14g03280.1   sequence type=predicted peptide   gene model=Glyma14g03280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENEKDRFYDPFHYNHHHDQQLNHSSSSFPFFRDNNNNSAPIGSQLNFQGFDDHNNPSSHHHTTFTDCLHGSMDYNTLSRAFDMSCSSSEVISSNIVENPKKPSAGGDSVGVSGNQQSTPNSSVSSSSNEAEAIIEEDSTKSQKDKQPKGCEEGDEKSKKENKPKKKEKKPREPRFSFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCGVKKRVERSFQDPTIVITTYEGQHNHHCPATLRGSAASMLSSPSFFGSSYMASSLPQDFLAQLLPSYSQNDHQNPMFNQNLSHNLHPQPQQQQQFQLSRDYGLLQDLLPSFPGKQVP*

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