Glyma14g03040 - SoyBase

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Report for Sequence Feature Glyma14g03040

Feature Type:	gene_model
Chromosome:	Gm14
Start:	1919981
stop:	1925807
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g03040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58760	AT	Annotation by Michelle Graham. TAIR10: Integrin-linked protein kinase family \| chr3:21728756-21731740 FORWARD LENGTH=471	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009966	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of signal transduction	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004712	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0192	KOG	Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs	JGI		ISS
PTHR23257	Panther	SERINE-THREONINE PROTEIN KINASE	JGI		ISS
PTHR23257:SF89	Panther	ANKYRIN-KINASE	JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7K3E6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase family protein n=1 Tax=Medicago truncatula RepID=G7K3E6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00018C6EC8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00018C6EC8 related cluster n=1 Tax=unknown RepID=UPI00018C6EC8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g03040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g03040

Paralog	Evidence	Comments
Glyma02g45770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g03040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g026700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g03040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g03040

Limit To All Plant Sequences

>Glyma14g03040.1   sequence type=CDS   gene model=Glyma14g03040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACCAAGAAGCTCCACCCTCGCTTCTCGCTCGGCCGCCAATCCTCCCTCGCGCCGGAGCGCGCCGGCGCCGGCGACTCGTCGGAGGCCCTGGACCCGGCGGTCCGGTTGATGTATCTGGCCAACGAAGGTGACTCGGACGGGATTAAGGAGCTTTTGGACGCCGGGAGTAACGTCAATTTCACCGACATCGACGGCCGCACCTCGCTCCACGTCGCCGCTTGCCAGGGCCGCACCGACGTCGTTGACTTGCTGCTCCGACGAGGCGCCCACGTCGATCCACAAGACCGCTGGGGCAGCACCCCTCTAGTTGATGCAATGTACTACAAGAATCACCAAGTTGTCAAGCTTTTGGAGAAACACGGTGCAAGACCCCCTATGGCTCCCATGCATGTGCAGAATGCTCGTGAAGTACCTGAGTATGAGATTGATCCTTCTGAACTTGATTTTACTAATAGTGTTTGCATAACAAAGGGAACTTTCAGGATTGCATTATGGCGTGGAATTCAGGTTGCTGTCAAGACACTTGGGGAGGAATTGTTCACTGATGATGACAAAGTAAAGGCATTTCATTATGAGCTTACATTACTTGAGAAAATAAGGCATCCAAATGTAGTCCAGTTTTTGGGTGCTGTAACACAAAGCACACCAATGATGATTGTCACAGAATATCTACCCCAGGGGGATCTCGGTGCCTACTTGAAGCGGAAAGGTGCATTAAAACCAGTAACCGCCGTAAAGTTTGCACTTGATATTGCTAGGGGTATGAACTATTTGCATGAACATAAACCAGAAGCCATTATACACAGAGATCTTGAGCCTTCAAATATACTGCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTTAAAGTTGCTAAAATGGTCAAAGAAGACAAACCCGTGGCAAGCCTGGATACATCATGGCGTTATGTTGCTCCAGAGGTATATAGAAATGAGGAATACGACACAAATGTGGATGTATTTTCATTTGCTCTGATATTACAGGAGATGATTGAAGGTTGTCCACCGTTTTTTGCAAAGCCAGAAAATGAAGTTCCTAAAGCATATGTTGAAAATGAGCGTCCACCATTTAGAGCTTCACCAAAGCTTTATGCTTATGGGCTAAAACAGTTAATTGAGGAATGCTGGGATGAAAAACCATACAGAAGGCCAACATTTAGGCAAATAATTGGGAGATTGGAAGACATATACTACCATCTTGCTCAAAAGAGGGGCTGGAAGGTTAGGACTCCTGGATGCTTCCAGAACCTGGAAGCCATATTTAGGGGTAATCGCACAAATCCAAGTAGCCGATCATCTCGCTCTACGGCCAGATAA

Predicted protein sequences of Glyma14g03040

Limit To All Plant Sequences

>Glyma14g03040.1   sequence type=predicted peptide   gene model=Glyma14g03040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METKKLHPRFSLGRQSSLAPERAGAGDSSEALDPAVRLMYLANEGDSDGIKELLDAGSNVNFTDIDGRTSLHVAACQGRTDVVDLLLRRGAHVDPQDRWGSTPLVDAMYYKNHQVVKLLEKHGARPPMAPMHVQNAREVPEYEIDPSELDFTNSVCITKGTFRIALWRGIQVAVKTLGEELFTDDDKVKAFHYELTLLEKIRHPNVVQFLGAVTQSTPMMIVTEYLPQGDLGAYLKRKGALKPVTAVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKVAKMVKEDKPVASLDTSWRYVAPEVYRNEEYDTNVDVFSFALILQEMIEGCPPFFAKPENEVPKAYVENERPPFRASPKLYAYGLKQLIEECWDEKPYRRPTFRQIIGRLEDIYYHLAQKRGWKVRTPGCFQNLEAIFRGNRTNPSSRSSRSTAR*

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