SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma14g02630

Feature Type:gene_model
Chromosome:Gm14
Start:1629490
stop:1630728
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g02630
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38460AT Annotation by Michelle Graham. TAIR10: geranylgeranyl reductase | chr4:17994849-17995974 FORWARD LENGTH=326 SoyBaseE_val: 8.00E-29ISS
GO:0008299GO-bp Annotation by Michelle Graham. GO Biological Process: isoprenoid biosynthetic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004161GO-mf Annotation by Michelle Graham. GO Molecular Function: dimethylallyltranstransferase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR12001Panther GERANYLGERANYL PYROPHOSPHATE SYNTHASE JGI ISS
PTHR12001:SF8Panther gb def: octaprenyl-diphosphate synthase [treponema pallidum] JGI ISS
UniRef100_B0ZSJ5UniRef Annotation by Michelle Graham. Best UniRef hit: Geranyl-diphosphate synthase n=1 Tax=Glycine max RepID=B0ZSJ5_SOYBN SoyBaseE_val: 0ISS
UniRef100_B0ZSJ5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Geranyl-diphosphate synthase n=1 Tax=Glycine max RepID=B0ZSJ5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g02630
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g02630 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g023000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g02630
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g02630
>Glyma14g02630.1   sequence type=CDS   gene model=Glyma14g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGGAGCCCTTCTCCTCAACGCCAACTTCAAGATTCATTTCTCACTCATATCATGCCAAGCCCGTGTCCCCTTACCCGTCAAGCCCGCACCGCTCAGAATGCCCTCTCCCCACTACCCCCACTGGGCCTCCTTGCAGGCCGACATTGAAGCCCACCTCAAACAAACCATTCCCCTCAAAGAACCCCTCGAGGTCTTCGAGCCCATGCTCCACCTCGCCTTCTCCGCCCCCCGGACCACCGTCCCGGCCCTATGCCTCGCCGCCTGCGAGCTTGTCGGCGGTCACCGCCAACAAGCCATGGCCGCGGCATCGGCCTTGTTACTCAACCTCGCCAATGCACACGCCCATGAACACCTAACCGACGGGCCCATGTACGGCCCCAACATAGAACTCCTCACCGGGGACGGGATTGTTCCGTTCGGGTTTGAGTTGCTGGCGAGGCCCGACGGGCCAGCAAGTGCGAGCCCGGAGCGAGTCCTACGTGTGATGATTGAGATATCACGTGCGGTGGGTTCGGTGGGGTTGCAAGACGCGCAGTACGTGAAGAAAACGTTGTGGGACGGTGGTGAGGAGGTGCAAAACGTGGAAAGCATGCAGCGCTTTGTATTGGAGAAAAGGGACGGTGGGTTGCATGCATGTGGGGCTGCGTCTGGTGCCATCTTGGGAGGTGGGAGTGAGGACCAAATTGAAAGGTTGAGAAATTTTGGATTTCATGTGGGGATGATGAGGGGAATGCTACAAATGGGGTTCATGGAAAAACATGTGCAAGAGGAGAGACATCTTGCACTCAAGGAACTGCAATTTTTCATGGACAGAGATGTTCATGTTATTTCTAGTTTTATTTATTAA
Predicted protein sequences of Glyma14g02630
>Glyma14g02630.1   sequence type=predicted peptide   gene model=Glyma14g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGALLLNANFKIHFSLISCQARVPLPVKPAPLRMPSPHYPHWASLQADIEAHLKQTIPLKEPLEVFEPMLHLAFSAPRTTVPALCLAACELVGGHRQQAMAAASALLLNLANAHAHEHLTDGPMYGPNIELLTGDGIVPFGFELLARPDGPASASPERVLRVMIEISRAVGSVGLQDAQYVKKTLWDGGEEVQNVESMQRFVLEKRDGGLHACGAASGAILGGGSEDQIERLRNFGFHVGMMRGMLQMGFMEKHVQEERHLALKELQFFMDRDVHVISSFIY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo