Glyma14g02120 - SoyBase

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Report for Sequence Feature Glyma14g02120

Feature Type:	gene_model
Chromosome:	Gm14
Start:	1260343
stop:	1262849
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g02120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16240	AT	Annotation by Michelle Graham. TAIR10: syntaxin of plants 51 \| chr1:5555183-5556340 REVERSE LENGTH=232	SoyBase	E_val: 2.00E-123	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0010008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome membrane	SoyBase	N/A	ISS
GO:0005484	GO-mf	Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG3202	KOG	SNARE protein TLG1/Syntaxin 6	JGI		ISS
PTHR12380	Panther	SYNTAXIN	JGI		ISS
PTHR12380:SF7	Panther	SYNTAXIN 51	JGI		ISS
PF05739	PFAM	SNARE domain	JGI		ISS
UniRef100_G7J036	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin-52 n=2 Tax=Medicago truncatula RepID=G7J036_MEDTR	SoyBase	E_val: 4.00E-146	ISS
UniRef100_I1M6L1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M6L1_SOYBN	SoyBase	E_val: 9.00E-168	ISS

Expression Patterns of Glyma14g02120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g02120 not represented in the dataset	Glyma14g02120 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g02120

Paralog	Evidence	Comments
Glyma02g46520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g02120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g017700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g02120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g02120

Limit To All Plant Sequences

>Glyma14g02120.2   sequence type=transcript   gene model=Glyma14g02120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTTTCTAGTTCCTAAGATAAAGAAAATGCTCGAGAAAATGACACCGAAAATGACGTCGTGGTGAATGAATTATTCGAAACCTTTCATCTTCCATAATCCCGCAAGGTAAACGACGGTGACGATTGGTGGGTGGCGCCGTACGCCTCATCCCATCCATCGCCATCGGCACCTTCCTTAAACGACATCGCGTCCATCACCCCTTTTCTCTTCCTCACAGTCACAGCAGTGGTAGCTTCCCAAAAAAGAGTGCCAATGGCATCTTCTTCAGACTCATGGGTGAAGGAATATAATGAAGCACTGAAACTTGCTGATGATATCAGTGGCATGATTTCTGAGCAGAGTTCATTTCCTGCATCTGGACCAGAAACCCAGCATCATTCATCTGCTATAAGGAGAAAGATTACAATATTGGGGACCAGGCTTGATAGCTTGCAGTCCCTTTTGTCAAAGCTTCCCGGCAAGCAGCCCATATCTGAGAAGGAGATGAATCGGCGCAAGGACATGCTTTCAAATTTGAGATCAAAAGTTAATCAGATGGCTTCCACGTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAAGAAAACCAGATGCAATGACCAGAATGGTTGGCCTGGACAACAATGGACTTGTTGGACTTCAGCGGCAAATTATGAAAGGTCACTTGATTGGATTGTTTGAAAATATATTGCTTTTAATCTGTTCTTTGGATCTTATAGTGCATTGCTATACAAGCAGAACAAGACGATGGCCTTGAGCAATTGGAAGAGACCGTGGCAAGCACCAAACATATTGCATTGGCAGTTAATGAAGAGCTGGATCTACACACTAGACTAATTGATGACTTAGACCAACATGTAGATGTCACAGATTCTCGGCTTAGGCGGGTGCAGAAGAACTTAGCGGTTTTAAATAAGCGAACCAAGGGTGGTTGCTCCTGCATGTGCATGCTATTATCAGTGGTTGGTATAGTGGCTTTGATTGTTGTTATTTGGCTATTGGTCAAATATTTGTAATGTATAAATACCCAACTTGGCTTGAGTCTGCTTTTCATCTTTGTTTCTGCCGTGTGCACTAAAGAATCATAATCAGGTTTCCCCATTTCTCTTGGTACTTTTCCAATGCAATGGAATTTGTTGAGGTCGTGAAAGGCGATGTATTGTAATTGGCATACTTGGTGTTTTATATATCGTGTGTTTTTCTCTTTTACAAATATGAAAGTGAATGCTACTGGCTGGAGTATCAATGTGGTTGAGTTTTCACACATTTCTCTGTTAGATTGTGCTCAAGTATTATGTACGTGATTTGCATTAA

Coding sequences of Glyma14g02120

Limit To All Plant Sequences

>Glyma14g02120.1   sequence type=CDS   gene model=Glyma14g02120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTTCTTCAGACTCATGGGTGAAGGAATATAATGAAGCACTGAAACTTGCTGATGATATCAGTGGCATGATTTCTGAGCAGAGTTCATTTCCTGCATCTGGACCAGAAACCCAGCATCATTCATCTGCTATAAGGAGAAAGATTACAATATTGGGGACCAGGCTTGATAGCTTGCAGTCCCTTTTGTCAAAGCTTCCCGGCAAGCAGCCCATATCTGAGAAGGAGATGAATCGGCGCAAGGACATGCTTTCAAATTTGAGATCAAAAGTTAATCAGATGGCTTCCACGTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAAGAAAACCAGATGCAATGACCAGAATGGTTGGCCTGGACAACAATGGACTTGTTGGACTTCAGCGGCAAATTATGAAAGAACAAGACGATGGCCTTGAGCAATTGGAAGAGACCGTGGCAAGCACCAAACATATTGCATTGGCAGTTAATGAAGAGCTGGATCTACACACTAGACTAATTGATGACTTAGACCAACATGTAGATGTCACAGATTCTCGGCTTAGGCGGGTGCAGAAGAACTTAGCGGTTTTAAATAAGCGAACCAAGGGTGGTTGCTCCTGCATGTGCATGCTATTATCAGTGGTTGGTATAGTGGCTTTGATTGTTGTTATTTGGCTATTGGTCAAATATTTGTAA

>Glyma14g02120.2   sequence type=CDS   gene model=Glyma14g02120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTTCTTCAGACTCATGGGTGAAGGAATATAATGAAGCACTGAAACTTGCTGATGATATCAGTGGCATGATTTCTGAGCAGAGTTCATTTCCTGCATCTGGACCAGAAACCCAGCATCATTCATCTGCTATAAGGAGAAAGATTACAATATTGGGGACCAGGCTTGATAGCTTGCAGTCCCTTTTGTCAAAGCTTCCCGGCAAGCAGCCCATATCTGAGAAGGAGATGAATCGGCGCAAGGACATGCTTTCAAATTTGAGATCAAAAGTTAATCAGATGGCTTCCACGTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAAGAAAACCAGATGCAATGACCAGAATGGTTGGCCTGGACAACAATGGACTTGTTGGACTTCAGCGGCAAATTATGAAAGGTCACTTGATTGGATTGTTTGAAAATATATTGCTTTTAATCTGTTCTTTGGATCTTATAGTGCATTGCTATACAAGCAGAACAAGACGATGGCCTTGA

Predicted protein sequences of Glyma14g02120

Limit To All Plant Sequences

>Glyma14g02120.1   sequence type=predicted peptide   gene model=Glyma14g02120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSDSWVKEYNEALKLADDISGMISEQSSFPASGPETQHHSSAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLSNLRSKVNQMASTLNMSNFANRDSLLGPERKPDAMTRMVGLDNNGLVGLQRQIMKEQDDGLEQLEETVASTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTKGGCSCMCMLLSVVGIVALIVVIWLLVKYL*

>Glyma14g02120.2   sequence type=predicted peptide   gene model=Glyma14g02120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSDSWVKEYNEALKLADDISGMISEQSSFPASGPETQHHSSAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLSNLRSKVNQMASTLNMSNFANRDSLLGPERKPDAMTRMVGLDNNGLVGLQRQIMKGHLIGLFENILLLICSLDLIVHCYTSRTRRWP*

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