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Report for Sequence Feature Glyma14g02100

Feature Type:gene_model
Chromosome:Gm14
Start:1252813
stop:1254940
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26710AT Annotation by Michelle Graham. TAIR10: ATPase, V0 complex, subunit E | chr4:13468705-13469668 FORWARD LENGTH=70 SoyBaseE_val: 4.00E-37ISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006661GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process SoyBaseN/AISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0015991GO-bp Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0015078GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transmembrane transporter activity SoyBaseN/AISS
KOG3500 KOG Vacuolar H+-ATPase V0 sector, subunit M9.7 (M9.2) JGI ISS
PTHR12263Panther VACUOLAR ATP SYNTHASE SUBUNIT H JGI ISS
PF05493PFAM ATP synthase subunit H JGI ISS
UniRef100_B3FNQ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP synthase subunit H protein n=1 Tax=Hevea brasiliensis RepID=B3FNQ0_HEVBR SoyBaseE_val: 6.00E-37ISS
UniRef100_I1M6K9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M6K9_SOYBN SoyBaseE_val: 1.00E-42ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g02100 not represented in the dataset

Glyma14g02100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g46540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g017500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma14g02100.1   sequence type=CDS   gene model=Glyma14g02100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTCTCTGTAACCACGCTAATTTTCGCAGTGATTGGAATTGTGGCGTCCCTTTGTACCAGAATTTGTTTCAACAGAGGACCTTCCGCTAATCTATTTCACCTAACTTTGGTTCTTACTGCAACAACATGCTGCTGGATGATGTGGGCGATTGTATATCTAGCACAGATGAAACCGCTCATAGTACCTATATTGAGTGAGGGTGAATAA

>Glyma14g02100.1   sequence type=predicted peptide   gene model=Glyma14g02100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFSVTTLIFAVIGIVASLCTRICFNRGPSANLFHLTLVLTATTCCWMMWAIVYLAQMKPLIVPILSEGE*







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