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Report for Sequence Feature Glyma14g01510

Feature Type:gene_model
Chromosome:Gm14
Start:858627
stop:864353
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13226AT Annotation by Michelle Graham. TAIR10: regulatory protein RecX family protein | chr3:4264442-4266286 REVERSE LENGTH=382 SoyBaseE_val: 5.00E-57ISS
GO:0006282GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA repair SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF02631PFAM RecX family JGI ISS
UniRef100_G7K4S5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Regulatory protein recX n=1 Tax=Medicago truncatula RepID=G7K4S5_MEDTR SoyBaseE_val: 1.00E-137ISS
UniRef100_I1M6D9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M6D9_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g01510 not represented in the dataset

Glyma14g01510 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g47240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g011300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma14g01510.2   sequence type=transcript   gene model=Glyma14g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAGAGAAACGAACCAAAAATGGGGAACCCCTTGGTTTGGTAGGCACAAATTATGGTTGCATGAACATGGCAGGTTTCGCGGCAAACATCGGCTTCAACATCTCGTCCCACTTTCCCTGTCGCGTTTTTTCAATTCACCGGAGTATTTGGAAGTTTCAGATTGTCTGCTTGAAGAGAAGAGAGTATAGTTCTTCTGTTCCTATTAGGTACATTTCCAGCACATCCTGCAGGGTGAAAATACTTGAAACTGCACTGCCAGTGAAAAGCCTTGGATATTGTAGCTGTCCTGATGTTAATGTGCTCAAGATAAATGGTGGAAAAGATGTGCAGGCAACAATTGCACATTGTGAAATTTCTCAAGACCCGAATGAAATTTGCCCTGACTTATTATTTGATGACAGTGAACAAGATTCTTTTGATCAAATGGAAGAGGTTGGAGAGTTGACAATCCATGAGGGAGGAGACTCTTGTGACCAGGAATTGATACAAATTGACAAATTTACCAGTGATGTCGAGGAAGCTGCTATTAAATTACTTGCATCTAGGGCACTCACAGCACTTGAGTTGAGAAAGAAATTGCTTGGAAAGAGATTCTCTCCTGATTCAGTGGAGGCAGTGATAAACAAGTTCCAGAGAAGGCACTGTTCAAGAAGGGAGTTAGTCAAGCTGATGCTGAGAAGGCAGTTGAAGTGGTCTTTAAGGACAATGATTGTGCCGAAGATCACAAGTCAGTTATTGGCTTGTCAAAACATTCCATGGATCATCTTTATACTCAGGCCTCAAAGCAGTGGTTCAGAAGTCAGAATGTACTCAAGGAGACAAGGAAATCACGAATTGTTCGGTGGCTTCAGTACCGTGGCTTTGACTGGCATGTCATTAACATCATACTAAAGAAATTAGACAGGCAGGACCAGAATTCTCCATAGTGCACAATTGGGACATCCAACATTCATATCAATCTGGAAATTCATTGGTGGGCTCCATACATGTTTCTTGAAAATGTAGTGTGTAATATGGTAGGGTTGAAGCCTCCTTTGGCTCTTAATGCTGTTGCAAGAAAACTTGTAGTTCATTGCTTCAATTTGCTCAAGGCCATGTGGCATTTGAACACACAAGACTACACTTGTCTGGGTACATTGATGCTACCTTTTTTTTTCTTGTTGAGGCTGAGACAAAAGCAGCAAGCACCACTAAGTAGGTGCTACTTGTTGTGAGTCCACTGTTTCAATTCTTGTAGATATGGTGTGATATGATATGATCCAGAAACAATTGATGCGTGTGCTTATCTTAAATGTGTGCTTACGCTAGAAAGATTATCAACATGCCTATCCAATAACAGTCATTCATCAACTAGCATTCAGGATTCTAGAGCAGAATGAGTGCCATTAATGATATGATATAATGGCATGTGTTGAATTATTTCATAAAGCGTAGGAGACTTAAAGGGCTAGTTGGATGCAGACGTGCAGTTACCAGAACTCTTCAATAGCACCGCAGAATTTTATTTAATTTTTTCGTTTGAAATATATCATTTTATTTTCACATTGTTTGTTTGG

>Glyma14g01510.1   sequence type=CDS   gene model=Glyma14g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGGCAGGTTTCGCGGCAAACATCGGCTTCAACATCTCGTCCCACTTTCCCTGTCGCGTTTTTTCAATTCACCGGAGTATTTGGAAGTTTCAGATTGTCTGCTTGAAGAGAAGAGAGTATAGTTCTTCTGTTCCTATTAGGTACATTTCCAGCACATCCTGCAGGGTGAAAATACTTGAAACTGCACTGCCAGTGAAAAGCCTTGGATATTGTAGCTGTCCTGATGTTAATGTGCTCAAGATAAATGGTGGAAAAGATGTGCAGGCAACAATTGCACATTGTGAAATTTCTCAAGACCCGAATGAAATTTGCCCTGACTTATTATTTGATGACAGTGAACAAGATTCTTTTGATCAAATGGAAGAGGTTGGAGAGTTGACAATCCATGAGGGAGGAGACTCTTGTGACCAGGAATTGATACAAATTGACAAATTTACCAGTGATGTCGAGGAAGCTGCTATTAAATTACTTGCATCTAGGGCACTCACAGCACTTGAGTTGAGAAAGAAATTGCTTGGAAAGAGATTCTCTCCTGATTCAGTGGAGGCAGTGATAAACAAGTTCCAGAGAAGAGGGTTCATCAATGATAGGTTGTACGCTGAAACATTTTCTCAATCTAGATGGACTTCATCAAGTTGGGGGCCAAGGCGGATCAAACAAGCACTGTTCAAGAAGGGAGTTAGTCAAGCTGATGCTGAGAAGGCAGTTGAAGTGGTCTTTAAGGACAATGATTGTGCCGAAGATCACAAGTCAGTTATTGGCTTGTCAAAACATTCCATGGATCATCTTTATACTCAGGCCTCAAAGCAGTGGTTCAGAAGTCAGAATGTACTCAAGGAGACAAGGAAATCACGAATTGTTCGGTGGCTTCAGTACCGTGGCTTTGACTGGCATGTCATTAACATCATACTAAAGAAATTAGACAGGCAGGACCAGAATTCTCCATAG

>Glyma14g01510.2   sequence type=CDS   gene model=Glyma14g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGGCAGGTTTCGCGGCAAACATCGGCTTCAACATCTCGTCCCACTTTCCCTGTCGCGTTTTTTCAATTCACCGGAGTATTTGGAAGTTTCAGATTGTCTGCTTGAAGAGAAGAGAGTATAGTTCTTCTGTTCCTATTAGGTACATTTCCAGCACATCCTGCAGGGTGAAAATACTTGAAACTGCACTGCCAGTGAAAAGCCTTGGATATTGTAGCTGTCCTGATGTTAATGTGCTCAAGATAAATGGTGGAAAAGATGTGCAGGCAACAATTGCACATTGTGAAATTTCTCAAGACCCGAATGAAATTTGCCCTGACTTATTATTTGATGACAGTGAACAAGATTCTTTTGATCAAATGGAAGAGGTTGGAGAGTTGACAATCCATGAGGGAGGAGACTCTTGTGACCAGGAATTGATACAAATTGACAAATTTACCAGTGATGTCGAGGAAGCTGCTATTAAATTACTTGCATCTAGGGCACTCACAGCACTTGAGTTGAGAAAGAAATTGCTTGGAAAGAGATTCTCTCCTGATTCAGTGGAGGCAGTGATAAACAAGTTCCAGAGAAGGCACTGTTCAAGAAGGGAGTTAGTCAAGCTGATGCTGAGAAGGCAGTTGAAGTGGTCTTTAAGGACAATGATTGTGCCGAAGATCACAAGTCAGTTATTGGCTTGTCAAAACATTCCATGGATCATCTTTATACTCAGGCCTCAAAGCAGTGGTTCAGAAGTCAGAATGTACTCAAGGAGACAAGGAAATCACGAATTGTTCGGTGGCTTCAGTACCGTGGCTTTGACTGGCATGTCATTAACATCATACTAA

>Glyma14g01510.1   sequence type=predicted peptide   gene model=Glyma14g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMAGFAANIGFNISSHFPCRVFSIHRSIWKFQIVCLKRREYSSSVPIRYISSTSCRVKILETALPVKSLGYCSCPDVNVLKINGGKDVQATIAHCEISQDPNEICPDLLFDDSEQDSFDQMEEVGELTIHEGGDSCDQELIQIDKFTSDVEEAAIKLLASRALTALELRKKLLGKRFSPDSVEAVINKFQRRGFINDRLYAETFSQSRWTSSSWGPRRIKQALFKKGVSQADAEKAVEVVFKDNDCAEDHKSVIGLSKHSMDHLYTQASKQWFRSQNVLKETRKSRIVRWLQYRGFDWHVINIILKKLDRQDQNSP*

>Glyma14g01510.2   sequence type=predicted peptide   gene model=Glyma14g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMAGFAANIGFNISSHFPCRVFSIHRSIWKFQIVCLKRREYSSSVPIRYISSTSCRVKILETALPVKSLGYCSCPDVNVLKINGGKDVQATIAHCEISQDPNEICPDLLFDDSEQDSFDQMEEVGELTIHEGGDSCDQELIQIDKFTSDVEEAAIKLLASRALTALELRKKLLGKRFSPDSVEAVINKFQRRHCSRRELVKLMLRRQLKWSLRTMIVPKITSQLLACQNIPWIIFILRPQSSGSEVRMYSRRQGNHELFGGFSTVALTGMSLTSY*







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