SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20170 | AT | Annotation by Michelle Graham. TAIR10: RNA polymerase II transcription mediators | chr5:6807554-6810729 REVERSE LENGTH=653 | SoyBase | E_val: 0 | ISS |
| GO:0006357 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016592 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mediator complex | SoyBase | N/A | ISS |
| PF10156 | PFAM | Subunit 17 of Mediator complex | JGI | ISS | |
| UniRef100_F4K460 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Arabidopsis thaliana RepID=MED17_ARATH | SoyBase | E_val: 1.00E-180 | ISS |
| UniRef100_I1M698 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M698_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g01070 not represented in the dataset |
Glyma14g01070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g007400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g01070.3 sequence type=transcript gene model=Glyma14g01070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGACGGTGGAATTTTCTGGGAAAACTTTCCTAGAAAATAGACGATGGCATGCAATTGCAAATCTCCCTTGACAAGCTACCAATCAAGCGCTTGGATTCCATTGAAGAAAATGGAGTTGAACGATTCCCGCCAGATCTGGATTACGATGCGAAGAGGCTATCCTTAATTAGGCAAATTGACTTCGCTTGGGCTGTTGAGAAGGATGAGGAGAAGAAGAAGCAGAAGAGCTCAAGAGAGACCTCAACGACATGGCAATGGCAGGACTTGGTAGAAAATTTGCAGTTGGCTCATCAGGAGCTCTCTGTCATTATAGATCTCATTAACATTGTCGAAGCAAATGATGCGGTAACAGTGGCTAGCATGACAAGACCAAAACTATTACCAAATGAAGCTTTATCTGACCGGGCTGTATCTGCAGCCATCAAGCTGCAATGTTACCGCCATGTTGGGAAATATTTCAAGCAATCTGCCAAGGCTTTTGAACAACAGGTTGCTCGGGAAGCTAGGTTTTATGGTGCCCTTATCAGGTTGCAGCAAAATTGGAAGGTTAAACGGCAACGTCAGGCAGCTATTGTTCCAGGGAATGAAGGCTTCACCTTTGATCTCTTTGATAACTCATACGACCAAGCAGCTATTATTCGCTCATTGTCTATGTCCACTGTTCGAGTCAATCACGATGCAGTTGGAATGCTGGCAATAAATGTGTCTCCTGATTTATGCCATTCTCTCCAACTGGGTTTTGTTGGTGTACAATCAGATGATACACGGAGGAAATCCAATGAAAACAAATCCCAATTTTCAGGTGAGCATAATTTGGGAGAAACAAGTGAAGAGTCCTTAAGTGATGAAGAGTGTGTTAAGAAAACACATTCACTCCTTCGTGAAGTGCATGAAGCTATTTTCAATGAACAGGTAATTCACTCCTTTGTTAAGAAAACACATTCACTCCTATCAATAATTTGTTCTTTCATTATTGTTGTTGTTGGTGCCAGTGTGATTGGAATACGAGAAAACTATTTACAATTAAGCTTAGGTCAAGGAACCTCTGTGTACTTAATACTAGTGTCCAATAGTCAAGATCATTCTACAGTTGAAGGTGAACTCACCGATAACGTAGAAAATGCAATTTTACCGTCTAAGAAAGCCCTCCTTTCTAATTCCATCTGCTATGAGATTGATATTCAACAGATTTTTCTTGAACATATATTTGGAAAAGGTGGCGAAAAACCAATTTCCGTTGGAAATCGTTTGTCTGGCGTACAGGAAAAGGATGGGTCCAGTCTTCTTGGTCATTTTTTAAAATCTTTGGCTCACAGGATATTTTCAACAAAAGTTCTTGCAGAGCTGGAAAACGTGGTATGCAAGGTCCCATATCTACAGCTAATTTCTAATCCCACATGGCATTCTCGGGCTTCGTCATGGACAATCTACATGGAGGTTCCTCTGATTATTATGAGAAAAATGATGGCAAGCGTCAGTTTTGGACTAAGCTGGTGGTAAATGATGATTGCATCAACGTTAAAGCTGAAGGTTCTCCAAATGTCGCAGGCCTGTTCAAATGAAAGTTTGAGGAAACCCATTCAATAAACAAATATAACTGCAACTTAGCTGATCTTCCTGTGATTATTATGCAGCAGATAAAGTTGCGAGCCAAATTATTAATCGGCTCTATCAGGAAGCTATGGTGGTTGGGATAAAAGCAAATCGAGACTTCTTATGCCTATCTTTTGAGCTGGAGCAGGGTGAAACACTTGGCCTGGTTGCAAGTGTTGTTGATCCAGAAAATAGTGAAGGGTGTATATCTTGGTGGTTGGTCATGGAGGACAGTTTTGCAGAGGAGCAAAAGCTTCATATGAGCATCACGGATGGTGCATCTGAATATAGGAAATTCCTAGGTCACTTGTCTCTTGATTTGTTATACACAACACTGATCGACTTGGTTGGCTTGTGCAGTGGTGGAGGTGGCCAATGAAGTTGTGTGAATGTTTTTCTTGCACTTTGTCAAGTGAAAGAAGATCTAGGACTAGGAGGTCTCTT
>Glyma14g01070.2 sequence type=CDS gene model=Glyma14g01070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAATTGCAAATCTCCCTTGACAAGCTACCAATCAAGCGCTTGGATTCCATTGAAGAAAATGGAGTTGAACGATTCCCGCCAGATCTGGATTACGATGCGAAGAGGCTATCCTTAATTAGGCAAATTGACTTCGCTTGGGCTGTTGAGAAGGATGAGGAGAAGAAGAAGCAGAAGAGCTCAAGAGAGACCTCAACGACATGGCAATGGCAGGACTTGGTAGAAAATTTGCAGTTGGCTCATCAGGAGCTCTCTGTCATTATAGATCTCATTAACATTGTCGAAGCAAATGATGCGGTAACAGTGGCTAGCATGACAAGACCAAAACTATTACCAAATGAAGCTTTATCTGACCGGGCTGTATCTGCAGCCATCAAGCTGCAATGTTACCGCAAAATTTGCACTGATGTTCAAGATCACCTCCTTTTTTTCAATGTACATGTTGGGAAATATTTCAAGCAATCTGCCAAGGCTTTTGAACAACAGGTTGCTCGGGAAGCTAGGTTTTATGGTGCCCTTATCAGGTTGCAGCAAAATTGGAAGGTTAAACGGCAACGTCAGGCAGCTATTGTTCCAGGGAATGAAGGCTTCACCTTTGATCTCTTTGATAACTCATACGACCAAGCAGCTATTATTCGCTCATTGTCTATGTCCACTGTTCGAGTCAATCACGATGCAGTTGGAATGCTGGCAATAAATGTGTCTCCTGATTTATGCCATTCTCTCCAACTGGGTTTTGTTGGTGTACAATCAGATGATACACGGAGGAAATCCAATGAAAACAAATCCCAATTTTCAGGTGAGCATAATTTGGGAGAAACAAGTGAAGAGTCCTTAAGTGATGAAGAGTGTGTTAAGAAAACACATTCACTCCTTCGTGAAGTGCATGAAGCTATTTTCAATGAACAGGTAATTCACTCCTTTGTTAAGAAAACACATTCACTCCTATCAATAATTTGTTCTTTCATTATTGTTGTTGTTGGTGCCAGTGTGATTGGAATACGAGAAAACTATTTACAATTAAGCTTAGGTCAAGGAACCTCTGTGTACTTAATACTAGTGTCCAATAGTCAAGATCATTCTACAGTTGAAGGTGAACTCACCGATAACGTAGAAAATGCAATTTTACCGTCTAAGAAAGCCCTCCTTTCTAATTCCATCTGCTATGAGATTGATATTCAACAGATTTTTCTTGAACATATATTTGGAAAAGGTGGCGAAAAACCAATTTCCGTTGGAAATCGTTTGTCTGGCGTACAGGAAAAGGATGGGTCCAGTCTTCTTGGTCATTTTTTAAAATCTTTGGCTCACAGGATATTTTCAACAAAAGTTCTTGCAGAGCTGGAAAACGTGGTATGCAAGGTCCCATATCTACAGCTAATTTCTAATCCCACATGGCATTCTCGGGCTTCGTCATGGACAATCTACATGGAGGTTCCTCTGATTATTATGAGAAAAATGATGGCAAGCGTCAGTTTTGGACTAAGCTGGTGCAAGCTTATTACTGCAATTGAAATCATGCAGGTTGCGAGCCAAATTATTAATCGGCTCTATCAGGAAGCTATGGTGGTTGGGATAAAAGCAAATCGAGACTTCTTATGCCTATCTTTTGAGCTGGAGCAGGGTGAAACACTTGGCCTGGTTGCAAGTGTTGTTGATCCAGAAAATAGTGAAGGGTGTATATCTTGGTGGTTGGTCATGGAGGACAGTTTTGCAGAGGAGCAAAAGCTTCATATGAGCATCACGGATGGTGCATCTGAATATAGGAAATTCCTAGGTCACTTGTCTCTTGATTTGTTATACACAACACTGATCGACTTGGTTGGCTTGTGCAGTGGTGGAGGTGGCCAATGA >Glyma14g01070.3 sequence type=CDS gene model=Glyma14g01070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAATTGCAAATCTCCCTTGACAAGCTACCAATCAAGCGCTTGGATTCCATTGAAGAAAATGGAGTTGAACGATTCCCGCCAGATCTGGATTACGATGCGAAGAGGCTATCCTTAATTAGGCAAATTGACTTCGCTTGGGCTGTTGAGAAGGATGAGGAGAAGAAGAAGCAGAAGAGCTCAAGAGAGACCTCAACGACATGGCAATGGCAGGACTTGGTAGAAAATTTGCAGTTGGCTCATCAGGAGCTCTCTGTCATTATAGATCTCATTAACATTGTCGAAGCAAATGATGCGGTAACAGTGGCTAGCATGACAAGACCAAAACTATTACCAAATGAAGCTTTATCTGACCGGGCTGTATCTGCAGCCATCAAGCTGCAATGTTACCGCCATGTTGGGAAATATTTCAAGCAATCTGCCAAGGCTTTTGAACAACAGGTTGCTCGGGAAGCTAGGTTTTATGGTGCCCTTATCAGGTTGCAGCAAAATTGGAAGGTTAAACGGCAACGTCAGGCAGCTATTGTTCCAGGGAATGAAGGCTTCACCTTTGATCTCTTTGATAACTCATACGACCAAGCAGCTATTATTCGCTCATTGTCTATGTCCACTGTTCGAGTCAATCACGATGCAGTTGGAATGCTGGCAATAAATGTGTCTCCTGATTTATGCCATTCTCTCCAACTGGGTTTTGTTGGTGTACAATCAGATGATACACGGAGGAAATCCAATGAAAACAAATCCCAATTTTCAGGTGAGCATAATTTGGGAGAAACAAGTGAAGAGTCCTTAAGTGATGAAGAGTGTGTTAAGAAAACACATTCACTCCTTCGTGAAGTGCATGAAGCTATTTTCAATGAACAGGTAATTCACTCCTTTGTTAAGAAAACACATTCACTCCTATCAATAATTTGTTCTTTCATTATTGTTGTTGTTGGTGCCAGTGTGATTGGAATACGAGAAAACTATTTACAATTAAGCTTAGGTCAAGGAACCTCTGTGTACTTAATACTAGTGTCCAATAGTCAAGATCATTCTACAGTTGAAGGTGAACTCACCGATAACGTAGAAAATGCAATTTTACCGTCTAAGAAAGCCCTCCTTTCTAATTCCATCTGCTATGAGATTGATATTCAACAGATTTTTCTTGAACATATATTTGGAAAAGGTGGCGAAAAACCAATTTCCGTTGGAAATCGTTTGTCTGGCGTACAGGAAAAGGATGGGTCCAGTCTTCTTGGTCATTTTTTAAAATCTTTGGCTCACAGGATATTTTCAACAAAAGTTCTTGCAGAGCTGGAAAACGTGGTATGCAAGGTCCCATATCTACAGCTAATTTCTAATCCCACATGGCATTCTCGGGCTTCGTCATGGACAATCTACATGGAGGTTCCTCTGATTATTATGAGAAAAATGATGGCAAGCGTCAGTTTTGGACTAAGCTGGTGGTAA
>Glyma14g01070.2 sequence type=predicted peptide gene model=Glyma14g01070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQLQISLDKLPIKRLDSIEENGVERFPPDLDYDAKRLSLIRQIDFAWAVEKDEEKKKQKSSRETSTTWQWQDLVENLQLAHQELSVIIDLINIVEANDAVTVASMTRPKLLPNEALSDRAVSAAIKLQCYRKICTDVQDHLLFFNVHVGKYFKQSAKAFEQQVAREARFYGALIRLQQNWKVKRQRQAAIVPGNEGFTFDLFDNSYDQAAIIRSLSMSTVRVNHDAVGMLAINVSPDLCHSLQLGFVGVQSDDTRRKSNENKSQFSGEHNLGETSEESLSDEECVKKTHSLLREVHEAIFNEQVIHSFVKKTHSLLSIICSFIIVVVGASVIGIRENYLQLSLGQGTSVYLILVSNSQDHSTVEGELTDNVENAILPSKKALLSNSICYEIDIQQIFLEHIFGKGGEKPISVGNRLSGVQEKDGSSLLGHFLKSLAHRIFSTKVLAELENVVCKVPYLQLISNPTWHSRASSWTIYMEVPLIIMRKMMASVSFGLSWCKLITAIEIMQVASQIINRLYQEAMVVGIKANRDFLCLSFELEQGETLGLVASVVDPENSEGCISWWLVMEDSFAEEQKLHMSITDGASEYRKFLGHLSLDLLYTTLIDLVGLCSGGGGQ* >Glyma14g01070.3 sequence type=predicted peptide gene model=Glyma14g01070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQLQISLDKLPIKRLDSIEENGVERFPPDLDYDAKRLSLIRQIDFAWAVEKDEEKKKQKSSRETSTTWQWQDLVENLQLAHQELSVIIDLINIVEANDAVTVASMTRPKLLPNEALSDRAVSAAIKLQCYRHVGKYFKQSAKAFEQQVAREARFYGALIRLQQNWKVKRQRQAAIVPGNEGFTFDLFDNSYDQAAIIRSLSMSTVRVNHDAVGMLAINVSPDLCHSLQLGFVGVQSDDTRRKSNENKSQFSGEHNLGETSEESLSDEECVKKTHSLLREVHEAIFNEQVIHSFVKKTHSLLSIICSFIIVVVGASVIGIRENYLQLSLGQGTSVYLILVSNSQDHSTVEGELTDNVENAILPSKKALLSNSICYEIDIQQIFLEHIFGKGGEKPISVGNRLSGVQEKDGSSLLGHFLKSLAHRIFSTKVLAELENVVCKVPYLQLISNPTWHSRASSWTIYMEVPLIIMRKMMASVSFGLSWW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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