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Report for Sequence Feature Glyma14g01040

Feature Type:gene_model
Chromosome:Gm14
Start:555817
stop:567893
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g01040
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G35750AT Annotation by Michelle Graham. TAIR10: histidine kinase 2 | chr5:13911743-13916337 REVERSE LENGTH=1176 SoyBaseE_val: 0ISS
GO:0000160GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009636GO-bp Annotation by Michelle Graham. GO Biological Process: response to toxin SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009736GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0010029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of seed germination SoyBaseN/AISS
GO:0010087GO-bp Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis SoyBaseN/AISS
GO:0010271GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chlorophyll catabolic process SoyBaseN/AISS
GO:0016310GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorylation SoyBaseN/AISS
GO:0018106GO-bp Annotation by Michelle Graham. GO Biological Process: peptidyl-histidine phosphorylation SoyBaseN/AISS
GO:0031537GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin metabolic process SoyBaseN/AISS
GO:0034757GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of iron ion transport SoyBaseN/AISS
GO:0048509GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem development SoyBaseN/AISS
GO:0048831GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of shoot development SoyBaseN/AISS
GO:0070417GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to cold SoyBaseN/AISS
GO:0071215GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to abscisic acid stimulus SoyBaseN/AISS
GO:0080117GO-bp Annotation by Michelle Graham. GO Biological Process: secondary growth SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000155GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity SoyBaseN/AISS
GO:0000156GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity SoyBaseN/AISS
GO:0004673GO-mf Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase activity SoyBaseN/AISS
GO:0004871GO-mf Annotation by Michelle Graham. GO Molecular Function: signal transducer activity SoyBaseN/AISS
GO:0005034GO-mf Annotation by Michelle Graham. GO Molecular Function: osmosensor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0009884GO-mf Annotation by Michelle Graham. GO Molecular Function: cytokinin receptor activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
GO:0019900GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase binding SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
GO:0043424GO-mf Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding SoyBaseN/AISS
KOG0519 KOG Sensory transduction histidine kinase JGI ISS
PTHR24423Panther TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED JGI ISS
PTHR24423:SF37Panther JGI ISS
PF00072PFAM Response regulator receiver domain JGI ISS
PF00512PFAM His Kinase A (phosphoacceptor) domain JGI ISS
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI ISS
PF03924PFAM CHASE domain JGI ISS
UniRef100_G7KEP4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histidine kinase cytokinin receptor n=1 Tax=Medicago truncatula RepID=G7KEP4_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233711CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233711C related cluster n=1 Tax=unknown RepID=UPI000233711C SoyBaseE_val: 0ISS

Proteins Associated with Glyma14g01040
LocusGene SymbolProtein Name
HK11 Ubiquitous, Histidine Kinase

Expression Patterns of Glyma14g01040
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g01040
ParalogEvidenceComments
Glyma02g47611 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g01040 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g007100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g01040
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g01040
>Glyma14g01040.2   sequence type=CDS   gene model=Glyma14g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGTGAATCGAAGGCTTCCTGCTTCAAATGGTAGATTGCTATCAAATATGAAGTCTTGGAAGCTGAATGAGCCTCTGAATGGGTCTAATTCTCCCAGGACATGTAGGAGGAAGCCCTTGCTTCTTTGGTTTTTTGGCTTTGTTGCCATAGGGAGTGTTTGGTTCATCTTGAGTTTCAATAGTAAGTATTTGGTGAGCAAGGAGAATGAAGCAATTTGTGAAGAGAGAGAGAGAGCCTTGCTACAACGTTACAATGTTAGTAGGAAACAGATTCATGCTTTGGCTTCCTTGTTCTCTGGATCAGATCAGATTTTATCCAACTGTATTGATGAAAGAAGACTTCAAATGCTGTTAAGCAGCGGCATGGTCAGTACACCACAGTTAATATGTCCGGAGAATCAGGAGTTACAAAAGGTGCATACATGTGTTGCAGACACTGTAGAACCTATAGAACAATGCCCAGTTCTCAATGATTGTGTCCAGACAAGGCTTGAATTATCATTCCCATTGAAAAGTTATGTATCATTGGCCTCGCACTCTGCACTTCCAACTGATTTGGTTAGTTATTTGCACCGTGGAAAGAACATTGTGCAATCATGGGAACTGAGGGTATCTGCAATTCGGTATCATGCGAGTTCATCTAATTTAATTAAAGGATGCTGGTGGGTCCTCATTGGAATTACAATGTCCTACTTCTGTTTACTATGGAGGAATCAAAAGCAGAAGCTAGTTCAGGGGCATCCAGCTGCACAACAAAAGTGTTTGAAACATTTTCCAAGGGGTCCTTCAAGGGGTGCTGGGAGGTGGAGGAAAAAGTTATTAGTTATATTTGTGTCACTTGGAATAATCGGGTCCTTTTGGTTATTTTGGCACCTGAATACGGGAATTATGCGGAGAAGAGAAGAAACTCTAGCAAATATGTGTGATGAGAGAGCCCGTATGCTGCAAGATCAGTTTAATGTGAGCATGAACCATGTTCATGCTCTGGCTATCCTTGTATCTACCTTTCACCATGGTAAACATCCTTCTGCAATTGACCAGAAAATTTTTGGAGAATATACAGAGAGTACAGCATTTGAAAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTCCACTCTGATAGGATGCATTTTGAGAAGCAGCATGGGTGGACAATTAAGAAAATGGAAACTGAGAATGAGGCATTAGTACAAGATTGTATTCCAGAAAATTTGGATCCAGCACCCATTCAAGATGAATATGCACCAGTGATATTTGCTCAAGAAACAGTTTCCCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGACCGTGAGAATATTTTGAGAGCAAGGGCGTCTGGAAAGGGGGTTCTGACATCCCCTTTTAAACTACTAAAGTCCAATCATCTGGGTGTTGTACTTACATTTGCTGTCTATAACACTAATCTTCCTTTAGATGCTACACTAGAGCAGCGTATTGAAGCTACTGTAGGGTATCTGGGTGCGTCTTATGATGTTCCATCACTGGTGGACAAGCTTCTACACCAACTTGCCAGTAAACAAACCATTGTTGTAAATGTTTATGACACAACTAATGCATCTGCACCAATCACAATGTATGGTACTGATGTTGCTGACACTGGCCTACTATACATAAGCAGCCTAGATTTTGGGGATCCGCTACGAAAACATGAGATGCACTGCAGCTTCAAGCAGAGGCCTCCATTACCTTGGACAGCAATCAATGCATCAGTGGGGGTGTTTGTTATTACTTTGCTTCTGGGTCATATTTTTTATGCAGCAATAAATAGAATAGCAAAAGTTGAGGATGACTATCGTCAAATGAGAGAGCTGAAAGTTCGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCGACAGTTTCACACGAGATCAGGACTCCAATGAACGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACTGAGCTTGATGAAAACCAGATGGACTGTGCCCAAACCGCTCACAAGAGTGGTAAAGATCTTATCTCAGTCATAAGCGAGGTTCTTGATCAAGCTAAGATTGAGGCTGGAAAGCTTGAACTTGAAGCTGTAGCCTTTGATCCTCGAGCTATTCTGGATGAAATTTTATCACTTTTCTCTGAAAAATCTAATGAAAAAGGAATAGAGCTGGCTGTTTATGCATCCAATCAAGTACCCAAAGTTGTCATTGGCGATCCTAAACGGTTCCGACAAATAATTACTAATCTTGTCGGCAATTCACTTAAGTTCACTCATGATAAAGGGCATGTATTTGTCTCTGTTCATCTGGCAAATGAAGTGAAGAACCCACTTCATATTATGGATGCAGTGCTGAGAGAAGGCTTAAACTTGAACCAGGACATATCAAACAGAACATATGATACGTTAAGTGGGTTTCCTGTATGCAACAGATGGAAAAGTTGGGCAAATTTTAAGCAGTTAAGTGGCATAAATGAGCCTGAAATTATTCAACTTCTAGTAATAGTTGAGGACACAGGTATAGGAATTCCTACAGATGCACAAAGCCGCATATTCACACCTTTTATGCAGGCTGACAGTTCCACCTCCCGAACATATGGTGGAACTGGAATAGGACTGAGTATTAGCAAATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGTGAGCCTGGAATTGGAAGCACTTTTTCCTTTACCGGAACCTTCAGAAAAGGAGAAAGCACGTCTCTGGATGCAATGCAGCAGAATAATCATTTTGGTTCAGAGTTCCAAGGATTGAGAACATTAGTGGTAGATAGCAGAAAAATCCGAGCTGAGGTCACAAGATATCATCTGCAGAGATTGGGAATGTCCGTGGATGTAACTTACAGTCTGAATTCTGCATGCTCTTGTTTATCTAATGTGTGTAACAAGAGTATGTCGACCCAATTGGCCATGATTCTTATAGACAAGGATGCTTGGGATAAAGAATGTCATATCTTATACACAATCAAGAAACGTAGACAGAATGGCATCAAAGGGGATCCAATGAATTTACCAAAGATTTTTCTCCTGGCCACCCACCTTAGCTCCAATGAACAGGATGGGCTCAAGTCAGTTGGTATAATAGATGATATACTGATGAAGCCTCTTTGGCTTAGTTCTTTGATTCAGTGCTACAGAGTATCCCTTGGCACTGAAAACAAGAGAGTAAATAGGAAAAAAGTGTCCAAACTCGGGAATTTATTAATTGACAAACAAATTTTGGTTGTTGATGATAATGCAGTCAACAGAAGAGTTGCAAAAGGTGTTCTACAGAAATATGGGGCTAAAGTTACTGCTGTGGAGAGTGGCAGGGCTGCTCTGAAGATGCTTAAACTGCCACATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGCAACGAGGCAAATCCGTTGTCTCGAGAGTGAGGTAAATGAGAAAATTGCGTGTGGGCAAGCATCTGCAGAGATGTTTGGTAGCATCTCTTATTGGCACATTCCAATACTGGCAATGACAGCAGATTCAACTCAGTCTTCCAATGAAGAGTGCATAAAGTGTGGAATGGATGACTATGTGTCAAAGCCATTTGAAGAAGAGAAGCTCTACATGGCAATGGCGCGTTTCTTCAAGTCAGATACATAG
Predicted protein sequences of Glyma14g01040
>Glyma14g01040.2   sequence type=predicted peptide   gene model=Glyma14g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVNRRLPASNGRLLSNMKSWKLNEPLNGSNSPRTCRRKPLLLWFFGFVAIGSVWFILSFNSKYLVSKENEAICEERERALLQRYNVSRKQIHALASLFSGSDQILSNCIDERRLQMLLSSGMVSTPQLICPENQELQKVHTCVADTVEPIEQCPVLNDCVQTRLELSFPLKSYVSLASHSALPTDLVSYLHRGKNIVQSWELRVSAIRYHASSSNLIKGCWWVLIGITMSYFCLLWRNQKQKLVQGHPAAQQKCLKHFPRGPSRGAGRWRKKLLVIFVSLGIIGSFWLFWHLNTGIMRRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATLEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGTDVADTGLLYISSLDFGDPLRKHEMHCSFKQRPPLPWTAINASVGVFVITLLLGHIFYAAINRIAKVEDDYRQMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDENQMDCAQTAHKSGKDLISVISEVLDQAKIEAGKLELEAVAFDPRAILDEILSLFSEKSNEKGIELAVYASNQVPKVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSVHLANEVKNPLHIMDAVLREGLNLNQDISNRTYDTLSGFPVCNRWKSWANFKQLSGINEPEIIQLLVIVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKGESTSLDAMQQNNHFGSEFQGLRTLVVDSRKIRAEVTRYHLQRLGMSVDVTYSLNSACSCLSNVCNKSMSTQLAMILIDKDAWDKECHILYTIKKRRQNGIKGDPMNLPKIFLLATHLSSNEQDGLKSVGIIDDILMKPLWLSSLIQCYRVSLGTENKRVNRKKVSKLGNLLIDKQILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLKLPHNFDACFMDLQMPEMDGFEATRQIRCLESEVNEKIACGQASAEMFGSISYWHIPILAMTADSTQSSNEECIKCGMDDYVSKPFEEEKLYMAMARFFKSDT*






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