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Report for Sequence Feature Glyma14g00930
Feature Type: gene_model
Chromosome: Gm14
Start: 477689
stop: 483671
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma14g00930
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G07820 AT
Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr3:2496597-2498028 REVERSE LENGTH=391
SoyBase E_val: 5.00E-132 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0004650 GO-mf
Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity
SoyBase N/A ISS
PTHR13697 Panther
PHOSPHOFRUCTOKINASE
JGI ISS
PF00295 PFAM
Glycosyl hydrolases family 28
JGI ISS
UniRef100_I1M684 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M684_SOYBN
SoyBase E_val: 0 ISS
UniRef100_O82019 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase n=1 Tax=Medicago sativa RepID=O82019_MEDSA
SoyBase E_val: 0 ISS
Expression Patterns of Glyma14g00930
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma14g00930
Paralog Evidence Comments
Glyma02g47720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma14g00930 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.14g006100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma14g00930
Transcripts of Glyma14g00930
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma14g00930.2 sequence type=transcript gene model=Glyma14g00930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTTTACCTGAATCAGGTTATTGATAAGTCATTCGGTTTTGACACTGTTGTTGAAGAGGCACAACGAACCATAAACTCTGCTCATGTGGAAGCAGAAAGCACTAAGAATGGTATCGGTATTGTCAAGTTAATGGGTCGTTACAGCGGGGTTTCAACGAGGCACTCAATGGGTTTACTGATGAGGGATGGAGCTCAAGTTATATTGCCCCTAGCACACACAATTGAGCATGAGGAGGCTTTGACAAAAGCTTGGGAAGAGGCATGCGCAGCAACAAGTGCAAGCAAAATTGTGATTCCTGGTGGGTCATACAAGATGGAAGCAGTTGATTTAAAAGGTCCTTGCATGGCTCCCATTGAAATTCAGTTTGATGGCACACTTCAAGCACCGGCTGACCCGAATGCACTCGACGGGGCTGATGAATGGCTCAAAGTACAACATGTTAACTTTTTTACCTTATCAGGTAAAGGTGTTTTTGATGGTCAAGGTGCAACTGCTTGGAAACAAAATGATTGTGGAACTAACAAGAATTGCAAGAAACGTTCCAAGAATTTTGGTTTCAATTTCCTGAACAATTCTATGGTTCGGGACATAACTTCTAAGGATAGCAAAAACTTTCATGTAAATGTTTTAGGGTGCAATAACTTCACATTTGATGGTTTCCACGTCAGTGCTCCAAATACCAGTATCAACACTGACGGGATTCACATTGGAAGATCAACTGATGTGAAAATTCTTAACACCAACATTGCCACTGGAGATGACTGCGTCTCATTGGGAGATGGTAGCAAAAAAATAACTGTCCAGAATGTGAATTGTGGACCTGGTCATGGCATTAGTGTTGGAAGTCTTGGCAAGTACCCAGAAGAAGAGCCGGTAGAACAACTTTTAGTCAAGAATTGCACTTTGACAAATACAGATAATGGTGTGAGGATCAAGACTTGGCCTAGTTCTCCAGGAGCTTCTCCTATTACTGATATGCATTTTGAAGATATTACCATGGTTGATGTCATGAACCCAGTGATCATAGACCAAGAGTATTGTCCTTGGAATCAGTGCTCAAAACAGGCTCCATCAAAAATAAAGATAAGCAAGGTTACCTTCAAGAATATTCAGGGCACTTCAAAAACCAAGGAAGGAGTGACTCTTATATGTAGCAAGGGTGTACCATGTGAGGATGTGGAACTAAATAACGTTGCTCTTACATTCAATGGAGCTCCAATAGTTGCTAAATGTGCTAATGTCAAGCCCATAGTTACAGGAAAAGCTCCTGCTTGCACATGTACAGCTTAAGAGACTTGGGTTGACACATTCTCCTTGACCAGATTTTTCTTTTGTAGATATGTAAGGTGAGGATGAGGACTATTTGAAGTCTATAGTGAATAAGCATTTGTATATACTTACGTTGTCAATGTCTAAGGGCATTTATTCAATACGAAAGCCTTGTGCAAGAGCATATATAAGATTGACTTTCTATTTACTAAAGAAAAGTTCTCATGCCGGTCACAATTGCTAGCTAGAAGCTACGAGGCTTTCCTGACTGTCTCCGCATATAGTATATTCTATATAACACTATTATTTATATTAGAATAAGAGTATATATTTATGTACAAAAATAAGAGAGAATATTTATATAAATATGC
Coding sequences of Glyma14g00930
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma14g00930.1 sequence type=CDS gene model=Glyma14g00930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACATGAAGTTGAATATTCCAGCAATTAATGTTTTATTCTTATTGCTAGCTATTTCTAGTACAACTCAATCGGTTGACATTAATATAAAAAAATTTGGCGGAGGTGCAGATATAACACAGGCTTTGACAAAAGCTTGGGAAGAGGCATGCGCAGCAACAAGTGCAAGCAAAATTGTGATTCCTGGTGGGTCATACAAGATGGAAGCAGTTGATTTAAAAGGTCCTTGCATGGCTCCCATTGAAATTCAGTTTGATGGCACACTTCAAGCACCGGCTGACCCGAATGCACTCGACGGGGCTGATGAATGGCTCAAAGTACAACATGTTAACTTTTTTACCTTATCAGGTAAAGGTGTTTTTGATGGTCAAGGTGCAACTGCTTGGAAACAAAATGATTGTGGAACTAACAAGAATTGCAAGAAACGTTCCAAGAATTTTGGTTTCAATTTCCTGAACAATTCTATGGTTCGGGACATAACTTCTAAGGATAGCAAAAACTTTCATGTAAATGTTTTAGGGTGCAATAACTTCACATTTGATGGTTTCCACGTCAGTGCTCCAAATACCAGTATCAACACTGACGGGATTCACATTGGAAGATCAACTGATGTGAAAATTCTTAACACCAACATTGCCACTGGAGATGACTGCGTCTCATTGGGAGATGGTAGCAAAAAAATAACTGTCCAGAATGTGAATTGTGGACCTGGTCATGGCATTAGTGTTGGAAGTCTTGGCAAGTACCCAGAAGAAGAGCCGGTAGAACAACTTTTAGTCAAGAATTGCACTTTGACAAATACAGATAATGGTGTGAGGATCAAGACTTGGCCTAGTTCTCCAGGAGCTTCTCCTATTACTGATATGCATTTTGAAGATATTACCATGGTTGATGTCATGAACCCAGTGATCATAGACCAAGAGTATTGTCCTTGGAATCAGTGCTCAAAACAGGCTCCATCAAAAATAAAGATAAGCAAGGTTACCTTCAAGAATATTCAGGGCACTTCAAAAACCAAGGAAGGAGTGACTCTTATATGTAGCAAGGGTGTACCATGTGAGGATGTGGAACTAAATAACGTTGCTCTTACATTCAATGGAGCTCCAATAGTTGCTAAATGTGCTAATGTCAAGCCCATAGTTACAGGAAAAGCTCCTGCTTGCACATGTACAGCTTAA
>Glyma14g00930.2 sequence type=CDS gene model=Glyma14g00930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTTTACCTGAATCAGGTTATTGATAAGTCATTCGGTTTTGACACTGTTGTTGAAGAGGCACAACGAACCATAAACTCTGCTCATGTGGAAGCAGAAAGCACTAAGAATGGTATCGGTATTGTCAAGTTAATGGGTCGTTACAGCGGGGTTTCAACGAGGCACTCAATGGGTTTACTGATGAGGGATGGAGCTCAAGTTATATTGCCCCTAGCACACACAATTGAGCATGAGGAGGCTTTGACAAAAGCTTGGGAAGAGGCATGCGCAGCAACAAGTGCAAGCAAAATTGTGATTCCTGGTGGGTCATACAAGATGGAAGCAGTTGATTTAAAAGGTCCTTGCATGGCTCCCATTGAAATTCAGTTTGATGGCACACTTCAAGCACCGGCTGACCCGAATGCACTCGACGGGGCTGATGAATGGCTCAAAGTACAACATGTTAACTTTTTTACCTTATCAGGTAAAGGTGTTTTTGATGGTCAAGGTGCAACTGCTTGGAAACAAAATGATTGTGGAACTAACAAGAATTGCAAGAAACGTTCCAAGAATTTTGGTTTCAATTTCCTGAACAATTCTATGGTTCGGGACATAACTTCTAAGGATAGCAAAAACTTTCATGTAAATGTTTTAGGGTGCAATAACTTCACATTTGATGGTTTCCACGTCAGTGCTCCAAATACCAGTATCAACACTGACGGGATTCACATTGGAAGATCAACTGATGTGAAAATTCTTAACACCAACATTGCCACTGGAGATGACTGCGTCTCATTGGGAGATGGTAGCAAAAAAATAACTGTCCAGAATGTGAATTGTGGACCTGGTCATGGCATTAGTGTTGGAAGTCTTGGCAAGTACCCAGAAGAAGAGCCGGTAGAACAACTTTTAGTCAAGAATTGCACTTTGACAAATACAGATAATGGTGTGAGGATCAAGACTTGGCCTAGTTCTCCAGGAGCTTCTCCTATTACTGATATGCATTTTGAAGATATTACCATGGTTGATGTCATGAACCCAGTGATCATAGACCAAGAGTATTGTCCTTGGAATCAGTGCTCAAAACAGGCTCCATCAAAAATAAAGATAAGCAAGGTTACCTTCAAGAATATTCAGGGCACTTCAAAAACCAAGGAAGGAGTGACTCTTATATGTAGCAAGGGTGTACCATGTGAGGATGTGGAACTAAATAACGTTGCTCTTACATTCAATGGAGCTCCAATAGTTGCTAAATGTGCTAATGTCAAGCCCATAGTTACAGGAAAAGCTCCTGCTTGCACATGTACAGCTTAA
Predicted protein sequences of Glyma14g00930
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma14g00930.1 sequence type=predicted peptide gene model=Glyma14g00930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDMKLNIPAINVLFLLLAISSTTQSVDINIKKFGGGADITQALTKAWEEACAATSASKIVIPGGSYKMEAVDLKGPCMAPIEIQFDGTLQAPADPNALDGADEWLKVQHVNFFTLSGKGVFDGQGATAWKQNDCGTNKNCKKRSKNFGFNFLNNSMVRDITSKDSKNFHVNVLGCNNFTFDGFHVSAPNTSINTDGIHIGRSTDVKILNTNIATGDDCVSLGDGSKKITVQNVNCGPGHGISVGSLGKYPEEEPVEQLLVKNCTLTNTDNGVRIKTWPSSPGASPITDMHFEDITMVDVMNPVIIDQEYCPWNQCSKQAPSKIKISKVTFKNIQGTSKTKEGVTLICSKGVPCEDVELNNVALTFNGAPIVAKCANVKPIVTGKAPACTCTA*
>Glyma14g00930.2 sequence type=predicted peptide gene model=Glyma14g00930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFYLNQVIDKSFGFDTVVEEAQRTINSAHVEAESTKNGIGIVKLMGRYSGVSTRHSMGLLMRDGAQVILPLAHTIEHEEALTKAWEEACAATSASKIVIPGGSYKMEAVDLKGPCMAPIEIQFDGTLQAPADPNALDGADEWLKVQHVNFFTLSGKGVFDGQGATAWKQNDCGTNKNCKKRSKNFGFNFLNNSMVRDITSKDSKNFHVNVLGCNNFTFDGFHVSAPNTSINTDGIHIGRSTDVKILNTNIATGDDCVSLGDGSKKITVQNVNCGPGHGISVGSLGKYPEEEPVEQLLVKNCTLTNTDNGVRIKTWPSSPGASPITDMHFEDITMVDVMNPVIIDQEYCPWNQCSKQAPSKIKISKVTFKNIQGTSKTKEGVTLICSKGVPCEDVELNNVALTFNGAPIVAKCANVKPIVTGKAPACTCTA*