Glyma14g00900 - SoyBase

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Report for Sequence Feature Glyma14g00900

Feature Type:	gene_model
Chromosome:	Gm14
Start:	475724
stop:	476999
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g00900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27820	AT	Annotation by Michelle Graham. TAIR10: Ribosomal L18p/L5e family protein \| chr5:9860584-9860928 FORWARD LENGTH=114	SoyBase	E_val: 5.00E-62	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PTHR12899	Panther	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	JGI		ISS
PF00861	PFAM	Ribosomal L18p/L5e family	JGI		ISS
UniRef100_B9RFC9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L18, putative n=1 Tax=Ricinus communis RepID=B9RFC9_RICCO	SoyBase	E_val: 1.00E-60	ISS
UniRef100_I1M682	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M682_SOYBN	SoyBase	E_val: 8.00E-75	ISS

Expression Patterns of Glyma14g00900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g00900

Paralog	Evidence	Comments
Glyma02g47730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g00900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g006000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g00900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g00900

Limit To All Plant Sequences

>Glyma14g00900.2   sequence type=transcript   gene model=Glyma14g00900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAAAGCAAAAAATTAAAAAGGACAGGAAAAAAAAAACAAGATATTAGAAGGACGGCGTCGTAAATATTTATTTGACAAAGTGGGTTGCGAGGGCAGAGCGAGAGGGATTGGAGTTGGGAAGAATAGAATACGCCTTGGATCTTATTCAGCTCAACTCAGATATGGTTATCCCACCCCCTGTAAGGCCTCCCAGGATTACACAATTTCTCAAACCTTATGTTCTGAAGATGAATTTTACCAATAAGTATGTGAGTGCCCAGGTGATTCACAGCCCAACTGCTACTGTAGCCTCTTCTGCAAGCTCGCAGGAGAAAGCGTTGAGATCAAGCTTGGAAACTAGTCGCGATGTGGCTGCAGCTGCAAAGATTGGGAAGATACTAGCAGAACGCCTTTTGCTTAAGAACATTCCTGCTGTTTCTGTTCACTTGAAGAGAGAGCAGAAGTATCATGGTAAGGTTAAAGCGGTTATTGATTCTCTCAGGGAAGCTGGTGTTAAGCTGCTTTGAGCATGATTGTTTAATTGTACCTTAGAGAGAACATCCTTGTTGGATCTTATTTTTTAGGTTTTCATCATTACAGCAAGTTACTGATTGATCATATTTCTCAAAGACCTTAGTTAATTACGTTACTAGAAATAAGATGAGTGTTGATGGTTGCTTAGATTGTCTAGTGGAGTGTGTTTGTTTTACTCATTTCCCACTTTCCAATGCACTTCCAACAGTTTGCTGTTGAAAACTTGCAAACCCATGTTCAACGTAGATATGGTTGCTTCCTATTTTTGTGCATTGGAAAGTGTGGATCTACTGTTTGCATGATGTTTGTGTTCAACTAAACTAAGGATTTTCAT

Coding sequences of Glyma14g00900

Limit To All Plant Sequences

>Glyma14g00900.1   sequence type=CDS   gene model=Glyma14g00900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTATCCCACCCCCTGTAAGGCCTCCCAGGATTACACAATTTCTCAAACCTTATGTTCTGAAGATGAATTTTACCAATAAGTATGTGAGTGCCCAGGTGATTCACAGCCCAACTGCTACTGTAGCCTCTTCTGCAAGCTCGCAGGAGAAAGCGTTGAGATCAAGCTTGGAAACTAGTCGCGATGTGGCTGCAGCTGCAAAGATTGGGAAGATACTAGCAGAACGCCTTTTGCTTAAGAACATTCCTGCTGTTTCTGTTCACTTGAAGAGAGAGCAGAAGTATCATGGTAAGGTTAAAGCGGTTATTGATTCTCTCAGGGAAGCTGGTGTTAAGCTGCTTTGA

>Glyma14g00900.2   sequence type=CDS   gene model=Glyma14g00900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTATCCCACCCCCTGTAAGGCCTCCCAGGATTACACAATTTCTCAAACCTTATGTTCTGAAGATGAATTTTACCAATAAGTATGTGAGTGCCCAGGTGATTCACAGCCCAACTGCTACTGTAGCCTCTTCTGCAAGCTCGCAGGAGAAAGCGTTGAGATCAAGCTTGGAAACTAGTCGCGATGTGGCTGCAGCTGCAAAGATTGGGAAGATACTAGCAGAACGCCTTTTGCTTAAGAACATTCCTGCTGTTTCTGTTCACTTGAAGAGAGAGCAGAAGTATCATGGTAAGGTTAAAGCGGTTATTGATTCTCTCAGGGAAGCTGGTGTTAAGCTGCTTTGA

Predicted protein sequences of Glyma14g00900

Limit To All Plant Sequences

>Glyma14g00900.1   sequence type=predicted peptide   gene model=Glyma14g00900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVIPPPVRPPRITQFLKPYVLKMNFTNKYVSAQVIHSPTATVASSASSQEKALRSSLETSRDVAAAAKIGKILAERLLLKNIPAVSVHLKREQKYHGKVKAVIDSLREAGVKLL*

>Glyma14g00900.2   sequence type=predicted peptide   gene model=Glyma14g00900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVIPPPVRPPRITQFLKPYVLKMNFTNKYVSAQVIHSPTATVASSASSQEKALRSSLETSRDVAAAAKIGKILAERLLLKNIPAVSVHLKREQKYHGKVKAVIDSLREAGVKLL*

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