Glyma14g00870 - SoyBase

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Report for Sequence Feature Glyma14g00870

Feature Type:	gene_model
Chromosome:	Gm14
Start:	456385
stop:	458446
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g00870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G59960	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein \| chr1:22071410-22073067 REVERSE LENGTH=326	SoyBase	E_val: 4.00E-108	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1575	KOG	Voltage-gated shaker-like K+ channel, subunit beta/KCNAB	JGI		ISS
KOG1577	KOG	Aldo/keto reductase family proteins	JGI		ISS
PTHR11732	Panther	ALDO/KETO REDUCTASE	JGI		ISS
PTHR11732:SF34	Panther	3-CHLOROBENZOATE-3,4-DIOXYGENASE DYHYDROGENASE-RELATED	JGI		ISS
PF00248	PFAM	Aldo/keto reductase family	JGI		ISS
UniRef100_P26690	UniRef	Annotation by Michelle Graham. Best UniRef hit: NAD(P)H-dependent 6'-deoxychalcone synthase n=3 Tax=Glycine max RepID=6DCS_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P26690	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAD(P)H-dependent 6'-deoxychalcone synthase n=3 Tax=Glycine max RepID=6DCS_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g00870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g00870

Paralog	Evidence	Comments
Glyma02g47750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g00870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g005700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g00870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g00870

Limit To All Plant Sequences

>Glyma14g00870.2   sequence type=transcript   gene model=Glyma14g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTGCTATTGAAATCCCCACAATAGTGTTTCCAAACTCCTCTGCCCAACAGAGGATGCCAGTGGTTGGAATGGGATCTGCCCCTGACTTCACATGCAAGAAAGACACAAAGGAGGCTATCATTGAGGCCGTGAAACAGGGTTACAGACACTTCGACACTGCTGCTGCTTATGGCTCTGAACAGGCTCTCGGTGAAGCTCTCAAGGAAGCTATCCATCTTGGCCTCGTCTCCCGCCAAGACCTCTTTGTCACTTCCAAGCTTTGGGTCACCGAAAATCATCCTCATCTTTTCCATTCAAAATTTTGTCAACTTTCAAACAAGTGTATTCTGACTTCTATAAAAGCTCTCTTAACTCTTCAACTAGAGTACTTGGACCTGTATCTCATCCACTGGCCCCTGAGTTCTCAGCCAGGGAAGTTCTCATTTCCAATTGAAGTAGAAGATCTCTTGCCTTTTGACGTGAAGGGTGTGTGGGAATCCATGGAAGAGTGCCAGAAACTTGGCCTCACCAAAGCCATTGGAGTCAGCAACTTCTCTGTCAAGAAGCTTCAGAATCTGCTCTCTGTTGCTACCATCCGTCCCGTGGTCGATCAAGTGGAGATGAACCTTGCATGGCAACAGAAGAAGCTAAGAGAGTTCTGCAAAGAAAATGGGATAATAGTGACTGCGTTCTCTCCACTGAGGAAAGGTGCGAGCAGGGGCCCAAATGAAGTGATGGAGAATGATGTGCTGAAGGAGATTGCAGAGGCTCATGGGAAATCCATAGCCCAGGTGAGTCTGAGATGGTTGTACGAACAAGGTGTGACATTTGTGCCAAAGAGCTACGATAAGGAGAGGATGAACCAGAATCTGCACATCTTTGACTGGGCATTGACTGAACAAGATCATCACAAAATAAGTCAAATCAGCCAGAGCCGTTTGATCAGCGGACCCACCAAACCACAACTCGCTGATCTCTGGGATGATCAAATATAA

Coding sequences of Glyma14g00870

Limit To All Plant Sequences

>Glyma14g00870.1   sequence type=CDS   gene model=Glyma14g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTGAACAGGCTCTCGGTGAAGCTCTCAAGGAAGCTATCCATCTTGGCCTCGTCTCCCGCCAAGACCTCTTTGTCACTTCCAAGCTTTGGGTCACCGAAAATCATCCTCATCTTGTCCTTCCTGCTTTGCGCAAATCCACTTAAAACTCTTCAACTAGAGTACTTGGACCTGTATCTCATCCACTGGCCCCTGAGTTCTCAGCCAGGGAAGTTCTCATTTCCAATTGAAGTAGAAGATCTCTTGCCTTTTGACGTGAAGGGTGTGTGGGAATCCATGGAAGAGTGCCAGAAACTTGGCCTCACCAAAGCCATTGGAGTCAGCAACTTCTCTGTCAAGAAGCTTCAGAATCTGCTCTCTGTTGCTACCATCCGTCCCGTGGTCGATCAAGTGGAGATGAACCTTGCATGGCAACAGAAGAAGCTAAGAGAGTTCTGCAAAGAAAATGGGATAATAGTGACTGCGTTCTCTCCACTGAGGAAAGGTGCGAGCAGGGGCCCAAATGAAGTGATGGAGAATGATGTGCTGAAGGAGATTGCAGAGGCTCATGGGAAATCCATAGCCCAGGTGAGTCTGAGATGGTTGTACGAACAAGGTGTGACATTTGTGCCAAAGAGCTACGATAAGGAGAGGATGAACCAGAATCTGCACATCTTTGACTGGGCATTGACTGAACAAGATCATCACAAAATAAGTCAAATCAGCCAGAGCCGTTTGATCAGCGGACCCACCAAACCACAACTCGCTGATCTCTGGGATGATCAAATATAA

>Glyma14g00870.2   sequence type=CDS   gene model=Glyma14g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTGCTATTGAAATCCCCACAATAGTGTTTCCAAACTCCTCTGCCCAACAGAGGATGCCAGTGGTTGGAATGGGATCTGCCCCTGACTTCACATGCAAGAAAGACACAAAGGAGGCTATCATTGAGGCCGTGAAACAGGGTTACAGACACTTCGACACTGCTGCTGCTTATGGCTCTGAACAGGCTCTCGGTGAAGCTCTCAAGGAAGCTATCCATCTTGGCCTCGTCTCCCGCCAAGACCTCTTTGTCACTTCCAAGCTTTGGGTCACCGAAAATCATCCTCATCTTTTCCATTCAAAATTTTGTCAACTTTCAAACAAGTGTATTCTGACTTCTATAAAAGCTCTCTTAACTCTTCAACTAGAGTACTTGGACCTGTATCTCATCCACTGGCCCCTGAGTTCTCAGCCAGGGAAGTTCTCATTTCCAATTGAAGTAGAAGATCTCTTGCCTTTTGACGTGAAGGGTGTGTGGGAATCCATGGAAGAGTGCCAGAAACTTGGCCTCACCAAAGCCATTGGAGTCAGCAACTTCTCTGTCAAGAAGCTTCAGAATCTGCTCTCTGTTGCTACCATCCGTCCCGTGGTCGATCAAGTGGAGATGAACCTTGCATGGCAACAGAAGAAGCTAAGAGAGTTCTGCAAAGAAAATGGGATAATAGTGACTGCGTTCTCTCCACTGAGGAAAGGTGCGAGCAGGGGCCCAAATGAAGTGATGGAGAATGATGTGCTGAAGGAGATTGCAGAGGCTCATGGGAAATCCATAGCCCAGGTGAGTCTGAGATGGTTGTACGAACAAGGTGTGACATTTGTGCCAAAGAGCTACGATAAGGAGAGGATGAACCAGAATCTGCACATCTTTGACTGGGCATTGACTGAACAAGATCATCACAAAATAAGTCAAATCAGCCAGAGCCGTTTGATCAGCGGACCCACCAAACCACAACTCGCTGATCTCTGGGATGATCAAATATAA

Predicted protein sequences of Glyma14g00870

Limit To All Plant Sequences

>Glyma14g00870.1   sequence type=predicted peptide   gene model=Glyma14g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALNRLSVKLSRKLSILASSPAKTSLSLPSFGSPKIILILSFLLCANPLKTLQLEYLDLYLIHWPLSSQPGKFSFPIEVEDLLPFDVKGVWESMEECQKLGLTKAIGVSNFSVKKLQNLLSVATIRPVVDQVEMNLAWQQKKLREFCKENGIIVTAFSPLRKGASRGPNEVMENDVLKEIAEAHGKSIAQVSLRWLYEQGVTFVPKSYDKERMNQNLHIFDWALTEQDHHKISQISQSRLISGPTKPQLADLWDDQI*

>Glyma14g00870.2   sequence type=predicted peptide   gene model=Glyma14g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAIEIPTIVFPNSSAQQRMPVVGMGSAPDFTCKKDTKEAIIEAVKQGYRHFDTAAAYGSEQALGEALKEAIHLGLVSRQDLFVTSKLWVTENHPHLFHSKFCQLSNKCILTSIKALLTLQLEYLDLYLIHWPLSSQPGKFSFPIEVEDLLPFDVKGVWESMEECQKLGLTKAIGVSNFSVKKLQNLLSVATIRPVVDQVEMNLAWQQKKLREFCKENGIIVTAFSPLRKGASRGPNEVMENDVLKEIAEAHGKSIAQVSLRWLYEQGVTFVPKSYDKERMNQNLHIFDWALTEQDHHKISQISQSRLISGPTKPQLADLWDDQI*

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