Glyma14g00290 - SoyBase

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Report for Sequence Feature Glyma14g00290

Feature Type:	gene_model
Chromosome:	Gm14
Start:	69944
stop:	78090
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g00290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35335	AT	Annotation by Michelle Graham. TAIR10: Nucleotide-sugar transporter family protein \| chr4:16807286-16810015 FORWARD LENGTH=352	SoyBase	E_val: 0	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0008643	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate transport	SoyBase	N/A	ISS
GO:0015780	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0000139	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005338	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide-sugar transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
KOG2234	KOG	Predicted UDP-galactose transporter	JGI		ISS
PTHR10231	Panther	SUGAR TRANSPORTER	JGI		ISS
PTHR10231:SF6	Panther	CMP-SIALIC ACID TRANSPORTER-RELATED	JGI		ISS
PF04142	PFAM	Nucleotide-sugar transporter	JGI		ISS
UniRef100_G7KFH1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-N-acetylglucosamine transporter n=1 Tax=Medicago truncatula RepID=G7KFH1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M628	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M628_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g00290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g00290 not represented in the dataset	Glyma14g00290 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g00290

Paralog	Evidence	Comments
Glyma02g48181	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g00290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g000600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g00290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g00290

Limit To All Plant Sequences

>Glyma14g00290.2   sequence type=transcript   gene model=Glyma14g00290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGGTGAGCAGCCGAGATCTGTTGCCGGTGGCATCAAGGAAAGTAAGAGTTTAGAGTTTGAACTCTGTTTATCCAATGCACAAAGCGTAGATCTCTGTGTTATAATGGAATACAGGAAAATCAAAGACGAGGTCAGTCTTTTTTCGCATATTTCTTCAATTAATAGTACGATTTTGATGCATTGTTGTTGTAGGATGAAGTTAGGGATGCGGGCGTTGAGGACGTTGGAAAATCATTTTTGCTGTCAGTCCCAGATAACGATTTGACTTCCGAGGGAGAAACCAAAATTGACAGCCACAGGGAGAAAGTAAAGTGGAAGCGCAAGTCAGTTGTTACACTTGCATTGACTGTTCTTACTAGTTCGCAAGGCATTCTAATCGTTTGGTCCAAGAGAGCTGGCAAGTATGAGTATAGTGTCACTACTGCTAACTTTATGGTGGAGACTTTAAAATGTGCTATATCCCTTGTGGCCTTGGGAAGAATATGGAAAAAAGACGGTGTCAATGAGGACAACAGGTTGACTACAACCTTGGATGAAGTTATAGTGTATCCTATTCCTGCAGCACTTTACCTTGTCAAAAATTTGCTTCAGTATTACATCTTTGCATATGTAGATGCTCCAGGCTATCAAATATTAAAGAACTTTAATATTATCAGTACGGGTGTCCTATACAGAATTATACTTAAGAAAAGGTTAAGTGAGATTCAGTGGGCTGCTTTTGTTCTACTCGCTGCTGGGTGCACTACAGCCCAGTTGAATTCAAATTCTGATCGTGTTCTTCAAACTCCCTTTCAAGGTTGGGTGATGGCAATTGTCATGGCTCTCTTGAGTGGTTTTGCAGGAGTATATACTGAGGCTATTATAAAAAAGCGTCCTTCACGGAACATAAATGTTCAGAACTTCTGGTTATATGTCTTCGGCATGTGTTTCAATGCTGTTGCAATGTTGGTTCAAGATTTTGATGCGGTGATGAACAAGGGATTCTTCCATGGATATTCATTCATTACAGTTCTCATGATTTTCAACCATGCACTCAGTGGAATTGCTGTATCAATGGTAATGAAGTATGCTGACAACATTGTGAAAGTGTATTCTACTTCAGTTGCAATGCTTCTTACGGCAGTTGTTTCTGTGTTCCTTTTTGGCTTCCATCTCTCCCTTGCCTTCTTCCTGGGCACAGTTGTTGTCTCTGTTGCAATTTATCTGCACTCTGCTGGGAAGATACAAAGATAACTATGGCTTCTGTCTTCTGTTTTTCCTATACTGGATTTTTTTATTCATTGTTGTTTAGCCTTGAGCAAACGAATACATATTAGTTCACTGTAATAGTGTGTGTATCTCAACATTCAACAAGGATAGAACCAGGCTTAGGTTCGATTGTCTACATTATGCTTCTTGATGCGTGAGATGTAAATTCGACTAGAAGCTCTTGTTGTAGTTAAGGATGTTGCCCTGACCTAGCAATTGAATCACCTTCCCACGCCCCATCCTAAATTTTTTAAGTTCTAAAAAGGGGGCAAAACCTATAGTTTAAGCGATGTGACTTTGTTGATCGAACCTTTGCAAATTTGAGAGGTTCTTGTGCATGTGAACTGATTTC

Coding sequences of Glyma14g00290

Limit To All Plant Sequences

>Glyma14g00290.1   sequence type=CDS   gene model=Glyma14g00290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATACAGGAAAATCAAAGACGAGGATGAAGTTAGGGATGCGGGCGTTGAGGACGTTGGAAAATCATTTTTGCTGTCAGTCCCAGATAACGATTTGACTTCCGAGGGAGAAACCAAAATTGACAGCCACAGGGAGAAAGTAAAGTGGAAGCGCAAGTCAGTTGTTACACTTGCATTGACTGTTCTTACTAGTTCGCAAGGCATTCTAATCGTTTGGTCCAAGAGAGCTGGCAAGTATGAGTATAGTGTCACTACTGCTAACTTTATGGTGGAGACTTTAAAATGTGCTATATCCCTTGTGGCCTTGGGAAGAATATGGAAAAAAGACGGTGTCAATGAGGACAACAGGTTGACTACAACCTTGGATGAAGTTATAGTGTATCCTATTCCTGCAGCACTTTACCTTGTCAAAAATTTGCTTCAGTATTACATCTTTGCATATGTAGATGCTCCAGGCTATCAAATATTAAAGAACTTTAATATTATCAGTACGGGTGTCCTATACAGAATTATACTTAAGAAAAGGTTAAGTGAGATTCAGTGGGCTGCTTTTGTTCTACTCGCTGCTGGGTGCACTACAGCCCAGTTGAATTCAAATTCTGATCGTGTTCTTCAAACTCCCTTTCAAGGTTGGGTGATGGCAATTGTCATGGCTCTCTTGAGTGGTTTTGCAGGAGTATATACTGAGGCTATTATAAAAAAGCGTCCTTCACGGAACATAAATGTTCAGAACTTCTGGTTATATGTCTTCGGCATGTGTTTCAATGCTGTTGCAATGTTGGTTCAAGATTTTGATGCGGTGATGAACAAGGGATTCTTCCATGGATATTCATTCATTACAGTTCTCATGATTTTCAACCATGCACTCAGTGGAATTGCTGTATCAATGGTAATGAAGTATGCTGACAACATTGTGAAAGTGTATTCTACTTCAGTTGCAATGCTTCTTACGGCAGTTGTTTCTGTGTTCCTTTTTGGCTTCCATCTCTCCCTTGCCTTCTTCCTGGGCACAGTTGTTGTCTCTGTTGCAATTTATCTGCACTCTGCTGGGAAGATACAAAGATAA

>Glyma14g00290.2   sequence type=CDS   gene model=Glyma14g00290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGAGACTTTAAAATGTGCTATATCCCTTGTGGCCTTGGGAAGAATATGGAAAAAAGACGGTGTCAATGAGGACAACAGGTTGACTACAACCTTGGATGAAGTTATAGTGTATCCTATTCCTGCAGCACTTTACCTTGTCAAAAATTTGCTTCAGTATTACATCTTTGCATATGTAGATGCTCCAGGCTATCAAATATTAAAGAACTTTAATATTATCAGTACGGGTGTCCTATACAGAATTATACTTAAGAAAAGGTTAAGTGAGATTCAGTGGGCTGCTTTTGTTCTACTCGCTGCTGGGTGCACTACAGCCCAGTTGAATTCAAATTCTGATCGTGTTCTTCAAACTCCCTTTCAAGGTTGGGTGATGGCAATTGTCATGGCTCTCTTGAGTGGTTTTGCAGGAGTATATACTGAGGCTATTATAAAAAAGCGTCCTTCACGGAACATAAATGTTCAGAACTTCTGGTTATATGTCTTCGGCATGTGTTTCAATGCTGTTGCAATGTTGGTTCAAGATTTTGATGCGGTGATGAACAAGGGATTCTTCCATGGATATTCATTCATTACAGTTCTCATGATTTTCAACCATGCACTCAGTGGAATTGCTGTATCAATGGTAATGAAGTATGCTGACAACATTGTGAAAGTGTATTCTACTTCAGTTGCAATGCTTCTTACGGCAGTTGTTTCTGTGTTCCTTTTTGGCTTCCATCTCTCCCTTGCCTTCTTCCTGGGCACAGTTGTTGTCTCTGTTGCAATTTATCTGCACTCTGCTGGGAAGATACAAAGATAA

Predicted protein sequences of Glyma14g00290

Limit To All Plant Sequences

>Glyma14g00290.1   sequence type=predicted peptide   gene model=Glyma14g00290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYRKIKDEDEVRDAGVEDVGKSFLLSVPDNDLTSEGETKIDSHREKVKWKRKSVVTLALTVLTSSQGILIVWSKRAGKYEYSVTTANFMVETLKCAISLVALGRIWKKDGVNEDNRLTTTLDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGVLYRIILKKRLSEIQWAAFVLLAAGCTTAQLNSNSDRVLQTPFQGWVMAIVMALLSGFAGVYTEAIIKKRPSRNINVQNFWLYVFGMCFNAVAMLVQDFDAVMNKGFFHGYSFITVLMIFNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTVVVSVAIYLHSAGKIQR*

>Glyma14g00290.2   sequence type=predicted peptide   gene model=Glyma14g00290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVETLKCAISLVALGRIWKKDGVNEDNRLTTTLDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGVLYRIILKKRLSEIQWAAFVLLAAGCTTAQLNSNSDRVLQTPFQGWVMAIVMALLSGFAGVYTEAIIKKRPSRNINVQNFWLYVFGMCFNAVAMLVQDFDAVMNKGFFHGYSFITVLMIFNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTVVVSVAIYLHSAGKIQR*

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