Glyma13g45030 - SoyBase

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Report for Sequence Feature Glyma13g45030

Feature Type:	gene_model
Chromosome:	Gm13
Start:	44350348
stop:	44360057
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g45030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46915	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3754) \| chr2:19274018-19277707 REVERSE LENGTH=708	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF12576	PFAM	Protein of unknown function (DUF3754)	JGI		ISS
UniRef100_I1M617	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M617_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2R3B7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2R3B7_ORYSJ	SoyBase	E_val: 3.00E-19	ISS

Expression Patterns of Glyma13g45030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g45030

Paralog	Evidence	Comments
Glyma15g00311	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g45030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g372900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g45030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g45030

Limit To All Plant Sequences

>Glyma13g45030.2   sequence type=transcript   gene model=Glyma13g45030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGAGAACCACACAATATAGGATACCCGTTTATCAACAAAAAGAAAGAATGTAGAGAGGGAGAGTGGTGAGGTGAGCGTTGTTGTTGAGCAGAAGAGAAGAGAATTGAATCCATTCCAGATGTCATATTGTTGGCAAATACACACTTTGGCGAGCAAGGCTCTTGTTCCAATTCCACAGTCACAGTCACAGTCATTGTTTTTTCCTTATTCACATTCCCATAGCAGTATCTGTGTGGGTCTGAGTCGGAGGGTTCCTTGTTCACGGCTTCAGGAAATGTCCGTAGTAGAGTCATCCTCACAATACCAGTATCAACAACAGCAGCAACAGAGCACCACCACCGACTACTATCCCAGTGTCAGAGATGATGAAGAAGGTGAAGGAATTTCTAAAATACGAGTGCCCAGACAGAAACACATCCCTGTTTCCAAGTCCCAACTCCTAGACGCCATCATCCTCTCTATCCAAGATGATATTGATGCCCATCACTTTCGTCTTCTCACCTCATGCTTAGACTCTATACTTCATGCCGAGCATAAAACTATCTTAGAGGAGATGCGTTCCGATTATCAACTTACCGATTCACTCCAACAACTTGTGTCCAATCCCAATGTCAAGGAGGAAGGGAACCTCTATGACTATCAGCCTGCTTTGGACCTCACCGCTCTTTTACGATCTCTCGACATACCTACCAAGAAAGATTATGATACCGGCTCCAGAGTTACCATTGCTACCCGTTTCCAACGTGCTTTCATGCAGCTTCTTTCAAATGCACAATTTGAAGAACTATCAGCTAGGGACCTGATGTTAACGTCTGCATTGAACACAGACTATCTCCTTACCTTGCCAATATATGTTGATTGGAAGAGAGCATATGAGTCTAATGCCATAATATTTAGGCGTGGTTATGCAACTGAGAAGCAGAAGGGCCTATTAATTGTTGAAAAACTGGATTACTTACAGTCTAAGTTTCTTCGAAGGACCTTCTTTGCTATATCAGAACCACTAACAAAACTTGGCACCTGGATAAGCGAGCTTTACGAAAATGCCTGTCAGAAACATGAAGTACAAAATTGGACTGAAAGATTGAGGCTTTGGCTAAAGGAATTGTCATTATTTCAGAAATCACTACTTTATAATGACCCTGCTTCAGATGAGCAAATAGGTGTGGACCAAGTACCAAATGCAGAACTTCCTATTTGGCTGGCTGCTCAAAGGGCAGTAGCTCGATATGAAGGGATTTTGTCACCAGTTGGTCCTCGTGGAAGGCTCTTGAGGAGATTGCTTTCTTGGATAGGACTTATTCCACCTATGCCAGAAACACCTTTTGAGGTTCACAATGATAATAACGCTCCTGAACCATACCTAAGGCCTACTTTTTTATCAAGGATATCACTAAGTGATATATGGAGACCTGCATCAAGGAAATACTGCAGAAATGATACTTGGAAAATGTTGAAAACTTCCATTTCCATACTTTTCTCACAGTCAGTCCTGCAGGAGCCAGCATTTGAAGAATTAATTCTACTGTATACCAAGGAAGTTGAGGAAACAAATGCTAAAGATAAAGCAGAGGTTCCATCATTGCAATTAAAGATCTATGAGAGAATTCCTATTCCAGATTTACCGGTAATTTTCCCTCACAAAAAGCTATCATTCCGCATCATAGACACAGTGCGCTTGGATGTTGCCACAATTTTAGGACTTCTGGCATACTTCATAAACTACAAATTTGAGAATGTCTTATCTTCCCCATCAGCAATATTACTTGATGTAGTTGCTGTAAGTGCCCTAATAATATATGGGAGTCGTGTGGTTCTAGGCTACAAACAGACATGGGATAGGTATCAGTTGTTAGTCAACAAGACACTTTATGAAAAAACATTGGCAAGTGGCTTTGGCTCAGTGCATTTTCTTCTAGATGCTTCTGAACAGCAGCAATACAAGGAAGCTATTTTGGCTTATGCCATCCTGCTCAAAGCAGAGAAGAGTCAGGTTATTTCTCGGCAAAGTGTTGGAGAGAAGTGTGAGAGATTCATGTATGAAGTGTTTAAAGTAAAGGTTGAAATGCCAATTGACAAGGCACTCAATACATTATTAAGGCTGGGCTTAGCAACTGAATCTAGTATTGATGGAAGGCGGGGATTGCTGGCTATGCCTTGTCCGAAGGCTTATGAGGCCCTTAAAGAACGATGGAATAGTTTGCTCAGTTAAAACGTGCGATGTGCACGTTCCATTGAGTACCGGAAACGACCTTCCCTGTTTAATAATAAAAGGCATTGTATATAGTAAGTATATAAACCCAACATGGCATCCGGTAATAGTTCTGTAGATAGATGAGACTAGGCATTATTCATGCTGCACTTTATTTTATTTTATTTATAAATCAGTGTATTTTGTTCGATCTTTTTTCATCGATTCCATAGATTAGCACAAACCTTGTAATGCAGCAGCCTAGGAAATGACTATATTGCCTCAATGCAATAGAGAATCAAAGCACAAAATAAATAATTTACGTATTACATTCTGGATGGAAATGAAAATGAATAGAAAGAAAAGAGAAAATTAATGAATTTTTTTAATTGTTTGGATTAAGAGAAATTAATTTTCTCTCTCTCTACTTATTGAAATTGATGGAGAAGTAAGAAGAAAGATAATAAATTCGATATAGGA

Coding sequences of Glyma13g45030

Limit To All Plant Sequences

>Glyma13g45030.1   sequence type=CDS   gene model=Glyma13g45030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATATTGTTGGCAAATACACACTTTGGCGAGCAAGGCTCTTGTTCCAATTCCACAGTCACAGTCACAGTCATTGTTTTTTCCTTATTCACATTCCCATAGCAGTATCTGTGTGGGTCTGAGTCGGAGGGTTCCTTGTTCACGGCTTCAGGAAATGTCCGTAGTAGAGTCATCCTCACAATACCAGTATCAACAACAGCAGCAACAGAGCACCACCACCGACTACTATCCCAGTGTCAGAGATGATGAAGAAGGTGAAGGAATTTCTAAAATACGAGTGCCCAGACAGAAACACATCCCTGTTTCCAAGTCCCAACTCCTAGACGCCATCATCCTCTCTATCCAAGATGATATTGATGCCCATCACTTTCGTCTTCTCACCTCATGCTTAGACTCTATACTTCATGCCGAGCATAAAACTATCTTAGAGGAGATGCGTTCCGATTATCAACTTACCGATTCACTCCAACAACTTGTGTCCAATCCCAATGTCAAGGAGGAAGGGAACCTCTATGACTATCAGCCTGCTTTGGACCTCACCGCTCTTTTACGATCTCTCGACATACCTACCAAGAAAGATTATGATACCGGCTCCAGAGTTACCATTGCTACCCGTTTCCAACGTGCTTTCATGCAGCTTCTTTCAAATGCACAATTTGAAGAACTATCAGCTAGGGACCTGATGTTAACGTCTGCATTGAACACAGACTATCTCCTTACCTTGCCAATATATGTTGATTGGAAGAGAGCATATGAGTCTAATGCCATAATATTTAGGCGTGGTTATGCAACTGAGAAGCAGAAGGGCCTATTAATTGTTGAAAAACTGGATTACTTACAGTCTAAGTTTCTTCGAAGGACCTTCTTTGCTATATCAGAACCACTAACAAAACTTGGCACCTGGATAAGCGAGCTTTACGAAAATGCCTGTCAGAAACATGAAGTACAAAATTGGACTGAAAGATTGAGGCTTTGGCTAAAGGAATTGTCATTATTTCAGAAATCACTACTTTATAATGACCCTGCTTCAGATGAGCAAATAGGTGTGGACCAAGTACCAAATGCAGAACTTCCTATTTGGCTGGCTGCTCAAAGGGCAGTAGCTCGATATGAAGGGATTTTGTCACCAGTTGGTCCTCGTGGAAGGCTCTTGAGGAGATTGCTTTCTTGGATAGGACTTATTCCACCTATGCCAGAAACACCTTTTGAGGTTCACAATGATAATAACGCTCCTGAACCATACCTAAGGCCTACTTTTTTATCAAGGATATCACTAAGTGATATATGGAGACCTGCATCAAGGAAATACTGCAGAAATGATACTTGGAAAATGTTGAAAACTTCCATTTCCATACTTTTCTCACAGTCAGTCCTGCAGGAGCCAGCATTTGAAGAATTAATTCTACTGTATACCAAGGAAGTTGAGGAAACAAATGCTAAAGATAAAGCAGAGGTTCCATCATTGCAATTAAAGATCTATGAGAGAATTCCTATTCCAGATTTACCGGTAATTTTCCCTCACAAAAAGCTATCATTCCGCATCATAGACACAGTGCGCTTGGATGTTGCCACAATTTTAGGACTTCTGGCATACTTCATAAACTACAAATTTGAGAATGTCTTATCTTCCCCATCAGCAATATTACTTGATGTAGTTGCTGTAAGTGCCCTAATAATATATGGGAGTCGTGTGGTTCTAGGCTACAAACAGACATGGGATAGGTATCAGTTGTTAGTCAACAAGACACTTTATGAAAAAACATTGGCAAGTGGCTTTGGCTCAGTGCATTTTCTTCTAGATGCTTCTGAACAGCAGCAATACAAGGAAGCTATTTTGGCTTATGCCATCCTGCTCAAAGCAGAGAAGAGTCAGGTTATTTCTCGGCAAAGTGTTGGAGAGAAGTGTGAGAGATTCATGTATGAAGTGTTTAAAGTAAAGCAGGTTGAAATGCCAATTGACAAGGCACTCAATACATTATTAAGGCTGGGCTTAGCAACTGAATCTAGTATTGATGGAAGGCGGGGATTGCTGGCTATGCCTTGTCCGAAGGCTTATGAGGCCCTTAAAGAACGATGGAATAGTTTGCTCAGTTAA

>Glyma13g45030.2   sequence type=CDS   gene model=Glyma13g45030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATATTGTTGGCAAATACACACTTTGGCGAGCAAGGCTCTTGTTCCAATTCCACAGTCACAGTCACAGTCATTGTTTTTTCCTTATTCACATTCCCATAGCAGTATCTGTGTGGGTCTGAGTCGGAGGGTTCCTTGTTCACGGCTTCAGGAAATGTCCGTAGTAGAGTCATCCTCACAATACCAGTATCAACAACAGCAGCAACAGAGCACCACCACCGACTACTATCCCAGTGTCAGAGATGATGAAGAAGGTGAAGGAATTTCTAAAATACGAGTGCCCAGACAGAAACACATCCCTGTTTCCAAGTCCCAACTCCTAGACGCCATCATCCTCTCTATCCAAGATGATATTGATGCCCATCACTTTCGTCTTCTCACCTCATGCTTAGACTCTATACTTCATGCCGAGCATAAAACTATCTTAGAGGAGATGCGTTCCGATTATCAACTTACCGATTCACTCCAACAACTTGTGTCCAATCCCAATGTCAAGGAGGAAGGGAACCTCTATGACTATCAGCCTGCTTTGGACCTCACCGCTCTTTTACGATCTCTCGACATACCTACCAAGAAAGATTATGATACCGGCTCCAGAGTTACCATTGCTACCCGTTTCCAACGTGCTTTCATGCAGCTTCTTTCAAATGCACAATTTGAAGAACTATCAGCTAGGGACCTGATGTTAACGTCTGCATTGAACACAGACTATCTCCTTACCTTGCCAATATATGTTGATTGGAAGAGAGCATATGAGTCTAATGCCATAATATTTAGGCGTGGTTATGCAACTGAGAAGCAGAAGGGCCTATTAATTGTTGAAAAACTGGATTACTTACAGTCTAAGTTTCTTCGAAGGACCTTCTTTGCTATATCAGAACCACTAACAAAACTTGGCACCTGGATAAGCGAGCTTTACGAAAATGCCTGTCAGAAACATGAAGTACAAAATTGGACTGAAAGATTGAGGCTTTGGCTAAAGGAATTGTCATTATTTCAGAAATCACTACTTTATAATGACCCTGCTTCAGATGAGCAAATAGGTGTGGACCAAGTACCAAATGCAGAACTTCCTATTTGGCTGGCTGCTCAAAGGGCAGTAGCTCGATATGAAGGGATTTTGTCACCAGTTGGTCCTCGTGGAAGGCTCTTGAGGAGATTGCTTTCTTGGATAGGACTTATTCCACCTATGCCAGAAACACCTTTTGAGGTTCACAATGATAATAACGCTCCTGAACCATACCTAAGGCCTACTTTTTTATCAAGGATATCACTAAGTGATATATGGAGACCTGCATCAAGGAAATACTGCAGAAATGATACTTGGAAAATGTTGAAAACTTCCATTTCCATACTTTTCTCACAGTCAGTCCTGCAGGAGCCAGCATTTGAAGAATTAATTCTACTGTATACCAAGGAAGTTGAGGAAACAAATGCTAAAGATAAAGCAGAGGTTCCATCATTGCAATTAAAGATCTATGAGAGAATTCCTATTCCAGATTTACCGGTAATTTTCCCTCACAAAAAGCTATCATTCCGCATCATAGACACAGTGCGCTTGGATGTTGCCACAATTTTAGGACTTCTGGCATACTTCATAAACTACAAATTTGAGAATGTCTTATCTTCCCCATCAGCAATATTACTTGATGTAGTTGCTGTAAGTGCCCTAATAATATATGGGAGTCGTGTGGTTCTAGGCTACAAACAGACATGGGATAGGTATCAGTTGTTAGTCAACAAGACACTTTATGAAAAAACATTGGCAAGTGGCTTTGGCTCAGTGCATTTTCTTCTAGATGCTTCTGAACAGCAGCAATACAAGGAAGCTATTTTGGCTTATGCCATCCTGCTCAAAGCAGAGAAGAGTCAGGTTATTTCTCGGCAAAGTGTTGGAGAGAAGTGTGAGAGATTCATGTATGAAGTGTTTAAAGTAAAGGTTGAAATGCCAATTGACAAGGCACTCAATACATTATTAAGGCTGGGCTTAGCAACTGAATCTAGTATTGATGGAAGGCGGGGATTGCTGGCTATGCCTTGTCCGAAGGCTTATGAGGCCCTTAAAGAACGATGGAATAGTTTGCTCAGTTAA

Predicted protein sequences of Glyma13g45030

Limit To All Plant Sequences

>Glyma13g45030.1   sequence type=predicted peptide   gene model=Glyma13g45030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYCWQIHTLASKALVPIPQSQSQSLFFPYSHSHSSICVGLSRRVPCSRLQEMSVVESSSQYQYQQQQQQSTTTDYYPSVRDDEEGEGISKIRVPRQKHIPVSKSQLLDAIILSIQDDIDAHHFRLLTSCLDSILHAEHKTILEEMRSDYQLTDSLQQLVSNPNVKEEGNLYDYQPALDLTALLRSLDIPTKKDYDTGSRVTIATRFQRAFMQLLSNAQFEELSARDLMLTSALNTDYLLTLPIYVDWKRAYESNAIIFRRGYATEKQKGLLIVEKLDYLQSKFLRRTFFAISEPLTKLGTWISELYENACQKHEVQNWTERLRLWLKELSLFQKSLLYNDPASDEQIGVDQVPNAELPIWLAAQRAVARYEGILSPVGPRGRLLRRLLSWIGLIPPMPETPFEVHNDNNAPEPYLRPTFLSRISLSDIWRPASRKYCRNDTWKMLKTSISILFSQSVLQEPAFEELILLYTKEVEETNAKDKAEVPSLQLKIYERIPIPDLPVIFPHKKLSFRIIDTVRLDVATILGLLAYFINYKFENVLSSPSAILLDVVAVSALIIYGSRVVLGYKQTWDRYQLLVNKTLYEKTLASGFGSVHFLLDASEQQQYKEAILAYAILLKAEKSQVISRQSVGEKCERFMYEVFKVKQVEMPIDKALNTLLRLGLATESSIDGRRGLLAMPCPKAYEALKERWNSLLS*

>Glyma13g45030.2   sequence type=predicted peptide   gene model=Glyma13g45030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYCWQIHTLASKALVPIPQSQSQSLFFPYSHSHSSICVGLSRRVPCSRLQEMSVVESSSQYQYQQQQQQSTTTDYYPSVRDDEEGEGISKIRVPRQKHIPVSKSQLLDAIILSIQDDIDAHHFRLLTSCLDSILHAEHKTILEEMRSDYQLTDSLQQLVSNPNVKEEGNLYDYQPALDLTALLRSLDIPTKKDYDTGSRVTIATRFQRAFMQLLSNAQFEELSARDLMLTSALNTDYLLTLPIYVDWKRAYESNAIIFRRGYATEKQKGLLIVEKLDYLQSKFLRRTFFAISEPLTKLGTWISELYENACQKHEVQNWTERLRLWLKELSLFQKSLLYNDPASDEQIGVDQVPNAELPIWLAAQRAVARYEGILSPVGPRGRLLRRLLSWIGLIPPMPETPFEVHNDNNAPEPYLRPTFLSRISLSDIWRPASRKYCRNDTWKMLKTSISILFSQSVLQEPAFEELILLYTKEVEETNAKDKAEVPSLQLKIYERIPIPDLPVIFPHKKLSFRIIDTVRLDVATILGLLAYFINYKFENVLSSPSAILLDVVAVSALIIYGSRVVLGYKQTWDRYQLLVNKTLYEKTLASGFGSVHFLLDASEQQQYKEAILAYAILLKAEKSQVISRQSVGEKCERFMYEVFKVKVEMPIDKALNTLLRLGLATESSIDGRRGLLAMPCPKAYEALKERWNSLLS*

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