Glyma13g45010 - SoyBase

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Report for Sequence Feature Glyma13g45010

Feature Type:	gene_model
Chromosome:	Gm13
Start:	44326121
stop:	44331390
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g45010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G50440	AT	Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein \| chr1:18686099-18687646 FORWARD LENGTH=250	SoyBase	E_val: 1.00E-130	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1609	KOG	Protein involved in mRNA turnover and stability	JGI		ISS
PTHR23012	Panther	MEMBRANE ASSOCIATED RING FINGER	JGI		ISS
PTHR23012:SF27	Panther	OS08G0384900 PROTEIN	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_B9RHV4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Membrane associated ring finger 1,8, putative n=1 Tax=Ricinus communis RepID=B9RHV4_RICCO	SoyBase	E_val: 3.00E-147	ISS
UniRef100_I1M615	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M615_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g45010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g45010

Paralog	Evidence	Comments
Glyma15g00320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g45010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g372600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g45010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g45010

Limit To All Plant Sequences

>Glyma13g45010.2   sequence type=transcript   gene model=Glyma13g45010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTGGGGTTGTGTTGTTGATATTGTGTTGATTTCTTCATTCAAGTTCAAACTTGAATTTGGATTCATTTGATTTAATCAATGAGATCAAAATCGGGATTTGATTGCAGTTGCAGTTCTCTATCTTTAGTGCTTATTACTAACTATTATTAAGGTTTCTTTCTTTTGTTGAAATGGTCTATAGTAATTATAGTTCTGCCAATGAATCTCATTGTTTAATCCTGATTATACCTTTCCCGAAATGCAATTAGCGTCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCATCACCATCTTCATTTGCAACCAACCGGAGAATCCTCCTTTTCCTGTGAAATTATCCCTATTCCTCCTGCTGCAGCTACTTTTAACGATGATGATTTACAAAACGTCCGGGTTGATGAGACTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCCCCATGCCATTGCAAAGGTACACAAAAGTACGTCCACAGATCATGTCTCGATAATTGGAGATCCACCAAGGAGGGTTTCGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGAGATCATGCATTCATTTTCATAATTGTTCAGCTGGTATGGGGTTGGTTACTCATTCATGTATTGTGAAATTGGTACTCCTAAGTCGTAATTCATGCTAATGACATTACTTTTTCCCTTTCTTTTCCTTTTTGTTTTCTGCCGGTTGACATGAGCCATCCTATTTGAGTTTATCATTCCCTTATGTAGTTCTCTTGAGTCTCAGTCATAGATATTGCTGCCATATCCACTAGTAATCTATATAATTTCATATACGTGAAGATGCATTGTGCAAATAGTTGGGATGATGCTAGGAAGAAATCTCGGTTGACGGTTTTCCTCTCTGATGGAACAAATCATTTTATGGAACCTCACTTCAACGTGTTTTCTTATTAGTAGTAGGGCTTTATGGAAGGAAACACCCTTAGGTAATTCAATATTTTTAGTATGCCTAATTTCTTCTAGAAACATTCACTAATAAATCTAGCATTACAAGCATTTTAGTTTGG

Coding sequences of Glyma13g45010

Limit To All Plant Sequences

>Glyma13g45010.1   sequence type=CDS   gene model=Glyma13g45010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTAGCGTCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCATCACCATCTTCATTTGCAACCAACCGGAGAATCCTCCTTTTCCTGTGAAATTATCCCTATTCCTCCTGCTGCAGCTACTTTTAACGATGATGATTTACAAAACGTCCGGGTTGATGAGACTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCCCCATGCCATTGCAAAGGTACACAAAAGTACGTCCACAGATCATGTCTCGATAATTGGAGATCCACCAAGGAGGGTTTCGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGAGATCATGCATTCATTTTCATAATTGTTCAGCTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTTGGTTTGCTCTATGGCTTCTTCATAGCGATAATATGTGGCCAAAGAATCAATGAGCGCCACTACCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTTGATCCCAGCCATGTGACAGAGCTAAGGATGTTGGGCCTTTACTAA

>Glyma13g45010.2   sequence type=CDS   gene model=Glyma13g45010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTAGCGTCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCATCACCATCTTCATTTGCAACCAACCGGAGAATCCTCCTTTTCCTGTGAAATTATCCCTATTCCTCCTGCTGCAGCTACTTTTAACGATGATGATTTACAAAACGTCCGGGTTGATGAGACTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCCCCATGCCATTGCAAAGGTACACAAAAGTACGTCCACAGATCATGTCTCGATAATTGGAGATCCACCAAGGAGGGTTTCGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGAGATCATGCATTCATTTTCATAATTGTTCAGCTGGTATGGGGTTGGTTACTCATTCATGTATTGTGA

Predicted protein sequences of Glyma13g45010

Limit To All Plant Sequences

>Glyma13g45010.1   sequence type=predicted peptide   gene model=Glyma13g45010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLASNGDKEECSESEPILNHHHLHLQPTGESSFSCEIIPIPPAAATFNDDDLQNVRVDETCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY*

>Glyma13g45010.2   sequence type=predicted peptide   gene model=Glyma13g45010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLASNGDKEECSESEPILNHHHLHLQPTGESSFSCEIIPIPPAAATFNDDDLQNVRVDETCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVWGWLLIHVL*

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