SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G16070 | AT | Annotation by Michelle Graham. TAIR10: tubby like protein 8 | chr1:5511899-5513779 REVERSE LENGTH=397 | SoyBase | E_val: 7.00E-124 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009620 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fungus | SoyBase | N/A | ISS |
| GO:0048443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stamen development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| KOG2502 | KOG | Tub family proteins | JGI | ISS | |
| PTHR16517 | Panther | TUBBY-RELATED | JGI | ISS | |
| PTHR16517:SF4 | Panther | TUBBY-LIKE PROTEIN TULP8 | JGI | ISS | |
| PF01167 | PFAM | Tub family | JGI | ISS | |
| UniRef100_G7ZYZ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tubby-like protein n=1 Tax=Medicago truncatula RepID=G7ZYZ4_MEDTR | SoyBase | E_val: 5.00E-154 | ISS |
| UniRef100_I1M601 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M601_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g44890 not represented in the dataset |
Glyma13g44890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g371500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g44890.1 sequence type=CDS gene model=Glyma13g44890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAAGATGAATAATGAGTCCTCAACGCGCACTTACAGTTCTCTCTATTTCAATCCCCTCACCACCACCACCACTGCCAAACCCCACCACACCTTTCTCTTTGACAAGGAAAACTCCAACGCCAATGGCTCCTCTGTTCTACCCAAGCCCAGGCCTTTCAGGTCTCTTTCCACTGACATGATCTTGAAGCCCTGCTCTCTTGAATCCCAGTCTCTGAATCTCAACATTTGGGACTACTCTGACTCCGAATCAGGTCCTGCTTCTTCCTGGTCCACACTGGCCAACAAGTCCTTGATCTGTAGACCCTTGCCTTTAGATATCGGAAGCTGCACTTGCTTTATCGTCAATGAACCACCTCCCCAGGGACTATCAGGTGGCACTTTCTTCTCTCTTTACACCAACGAAGGTCATGGACGCCAGAATAGGAAGCTAGCCGTTGCCCACCATAAGCGCCGCAATGGCAGGTCTCACTTCATCCTCGCTCAGAATCTCAGAGGACTCCTCTCCCATTCAGATGATTCTTTTCTTGGCACCGTAACAGCTAACCTCATCGGCTCTAAATACCACATTTGGGATCAGGGATATCTTCATAATTCCCGTGCTAAACAACCAAAGCCACCTCTTGCTGTTGTCACTTATATTCCTACTGTCACAACATGCACAGGAAGTCACAGAAGCATGAGGGCATATATACCCAAGCATCAAACTATGTCACTCAAGAGCACAACCCAGGTACAACATATAAAAGGATTGCCATTCAATTGGGAGGGAAAACCGGACAAAGTGCATCAACTATTCTCAAAGGTTCCACTTTACAACAAGATTTCAAAGCAATACGAGCTTGACTTTAGAGATAATAAAGGAAAGGCAGGAGGAGGATTTAGAATCCAAAGATCAGTAAAAAATTTCCAGCTGACTTTAGAGGAGAATGGGAGGCAAACGATCCTGCAGCTAGGGAGGGTGGAAAAGTCAAAATTCGTTATGGACTACAGCTATCCTTTGACAGGCTACCAGGCGTTTTGCATATGTTTGGCTTCCATGGATGCAAAACTTTGTTGCACACTCTAG
>Glyma13g44890.1 sequence type=predicted peptide gene model=Glyma13g44890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKKMNNESSTRTYSSLYFNPLTTTTTAKPHHTFLFDKENSNANGSSVLPKPRPFRSLSTDMILKPCSLESQSLNLNIWDYSDSESGPASSWSTLANKSLICRPLPLDIGSCTCFIVNEPPPQGLSGGTFFSLYTNEGHGRQNRKLAVAHHKRRNGRSHFILAQNLRGLLSHSDDSFLGTVTANLIGSKYHIWDQGYLHNSRAKQPKPPLAVVTYIPTVTTCTGSHRSMRAYIPKHQTMSLKSTTQVQHIKGLPFNWEGKPDKVHQLFSKVPLYNKISKQYELDFRDNKGKAGGGFRIQRSVKNFQLTLEENGRQTILQLGRVEKSKFVMDYSYPLTGYQAFCICLASMDAKLCCTL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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