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Report for Sequence Feature Glyma13g44582

Feature Type:gene_model
Chromosome:Gm13
Start:43974893
stop:43977727
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g44582
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G22760AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:9678012-9679165 FORWARD LENGTH=295 SoyBaseE_val: 3.00E-34ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR23042Panther CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS JGI ISS
PTHR23042:SF25Panther NAI1, DNA BINDING / TRANSCRIPTION FACTOR JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_G7IMB4UniRef Annotation by Michelle Graham. Most informative UniRef hit: BHLH transcription factor n=1 Tax=Medicago truncatula RepID=G7IMB4_MEDTR SoyBaseE_val: 1.00E-73ISS
UniRef100_UPI000233B38BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B38B related cluster n=1 Tax=unknown RepID=UPI000233B38B SoyBaseE_val: 4.00E-159ISS

Expression Patterns of Glyma13g44582
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g44582 not represented in the dataset
Glyma13g44582 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g44582 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g368600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g44582
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g44582
>Glyma13g44582.1   sequence type=CDS   gene model=Glyma13g44582   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGGCGACATCTCCTTCTTCAGTGAAGAGCATCCAAATCCAACCTTGTACTGTGTTGCAAATGAAACACATGTACAAACAGGAGCAAAGAGGGGTAGAAGCTCTTGGGAGACACCCACACGGGATCACATTATGTCCGAGAGAAAAAGGAGACAGCTAATGGCAGAGAGATTCATAGCGCTTTCAGCTATTATACCTGGCTTGAAGAAGATAGACAAGGCCTCTGTACTGAGTGAAGCTATTAATTACGTGAAACAACTTAAAGGACGCATAGCTGTGCTGGAGCAAGAGAGTAGCAACAAGAAGTCGATGATGATCTTTACTAAGAAGTGCCTCCAATCTCATCCTCATTGTGAAAAAAACTCTAATCACGTGCTCCCTCAACTCCAAGTCGAAGCAATAGGTCTAGAGTTAGAGAGGGAAGTACTTATTAGAATCCTTTGTGAGAAACCAAAGGGCATCTTCCTCAAACTACTCACCTTACTTGAAAATATGCATCTTTCTATTGTCAGTAGCAACGTCCTGCCACTTGGAAAAAATACTCTCAACATCACCATTATTGCTCAGATGGGTGAGGAATACAACATGACGGGGGATGAATTGATGAGCAAACTGACGCAGGATCTTTTCAAGTTATATGAAGTGCCTCAGTGA
Predicted protein sequences of Glyma13g44582
>Glyma13g44582.1   sequence type=predicted peptide   gene model=Glyma13g44582   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGDISFFSEEHPNPTLYCVANETHVQTGAKRGRSSWETPTRDHIMSERKRRQLMAERFIALSAIIPGLKKIDKASVLSEAINYVKQLKGRIAVLEQESSNKKSMMIFTKKCLQSHPHCEKNSNHVLPQLQVEAIGLELEREVLIRILCEKPKGIFLKLLTLLENMHLSIVSSNVLPLGKNTLNITIIAQMGEEYNMTGDELMSKLTQDLFKLYEVPQ*






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