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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma13g44535

Feature Type:gene_model
Chromosome:Gm13
Start:43945047
stop:43948797
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g44535
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G25145AT Annotation by Michelle Graham. TAIR10: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein | chr1:8818867-8820493 FORWARD LENGTH=326 SoyBaseE_val: 1.00E-27ISS
PF03331PFAM UDP-3-O-acyl N-acetylglycosamine deacetylase JGI ISS
UniRef100_F4IAT8UniRef Annotation by Michelle Graham. Most informative UniRef hit: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1 n=6 Tax=Arabidopsis thaliana RepID=LPXC1_ARATH SoyBaseE_val: 5.00E-25ISS
UniRef100_I1M5X3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M5X3_SOYBN SoyBaseE_val: 6.00E-47ISS

Expression Patterns of Glyma13g44535
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g44535 not represented in the dataset
Glyma13g44535 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g44535 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g368200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g44535
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g44535
>Glyma13g44535.1   sequence type=CDS   gene model=Glyma13g44535   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACAAGGAGTTTTTCAAAAACACGTTCTTAAGCTCTTTTGACGCATTTATGCAGACTGGGAGGCTGCAGCAAACCCTAGCGGATTGCGTGGAGCGGCAAGGCAAGGCGTTGCATTCGGGAAAGGTTTCGACGGTGAGACTGTGTCCCGAACGCGCTTCCCGAGGCAGGTACTTCGATTTTCGTTCCAATTTCGTTCCCGCCTCTGTTGAATTCGCTCAGGTCTCGCCCCTCTGCACCACTCTGTACAAAGGCGGGTTCCGAATTCGAATGTGGAAGAAGTTGGTTTGA
Predicted protein sequences of Glyma13g44535
>Glyma13g44535.1   sequence type=predicted peptide   gene model=Glyma13g44535   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYKEFFKNTFLSSFDAFMQTGRLQQTLADCVERQGKALHSGKVSTVRLCPERASRGRYFDFRSNFVPASVEFAQVSPLCTTLYKGGFRIRMWKKLV*






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