SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07140 | AT | Annotation by Michelle Graham. TAIR10: GPI transamidase component Gpi16 subunit family protein | chr3:2261278-2263632 FORWARD LENGTH=644 | SoyBase | E_val: 3.00E-125 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0042732 | GO-bp | Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0042765 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: GPI-anchor transamidase complex | SoyBase | N/A | ISS |
| GO:0003923 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GPI-anchor transamidase activity | SoyBase | N/A | ISS |
| KOG2407 | KOG | GPI transamidase complex, GPI16/PIG-T component, involved in glycosylphosphatidylinositol anchor biosynthesis | JGI | ISS | |
| PTHR12959 | Panther | GPI TRANSAMIDASE COMPONENT PIG-T-RELATED | JGI | ISS | |
| PTHR12959:SF11 | Panther | GPI TRANSAMIDASE COMPONENT PIG-T | JGI | ISS | |
| PF04113 | PFAM | Gpi16 subunit, GPI transamidase component | JGI | ISS | |
| UniRef100_B9S506 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GPI-anchor transamidase, putative n=1 Tax=Ricinus communis RepID=B9S506_RICCO | SoyBase | E_val: 1.00E-129 | ISS |
| UniRef100_I1M5X2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M5X2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g44520 not represented in the dataset |
Glyma13g44520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g44520.1 sequence type=CDS gene model=Glyma13g44520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTCAGAAGTATCATATTAAAACAATGGAGTTATCTTTTAACAAGGTCGATGGAACTATGATAGATGGGGTGGATTTGATTCAATATCAAGCTGCAATGCAAAGCCTCCAGGTTGGCGCATCTTGGAAAAATTTAAGCCATTCACTATCAGGTCTCTTTTGTGCTTCAATCAACTTCGTGGAGTCTTCTACCACTTATTCTGCTCCTGAATTGGCATTTCAATCAGCTTTGGGCAGTTTAAGATATGGTACACTGCCACGTGAAGCTGTGTGCACTGAGAATCTTACACCTTGGTTGAAACTCCTTCCTTATCATTCAGATGGGTCAAGATCAGGAATTAATCTAGAACAAACAGTTACAGTTGTACTCCAGCCCAATGATCAGAAAGCAGGTATGAACCATGTCAGTGAAACAAAGATACAATACAACCAAGCTGGTCCTGAGGATTTTAGAAGGAATGCTGGCTTTGAATTATCTGTTACTCCCAAAAGGGTGCATGCAGAAATGGAAACGAGCTCCTCAATTCTGTATGAATATCCAATCAAAGAATACACAGAGACTGAACAATTTGATTTAGGCCTAACGTGGAAGCATCCAATTGTTTGGTATAGCCCACATGCACCTTTATATGCCAGTAGATTTTCGATGGGAAGTGGGAATGAAAGGGGTGCTATTGCAATATCCTTGAAATTGATCCAGGGACTTGTTGCAATCAATAACGTTAAAGAGAGGTGTAAGTTTCAAGCTAATGTTCTCCAAATTGTGCCTTTGGTATTAGTTGATGAAAGGCCTCAAGCACTCACAGATTTTGTTGAGAGAATGCGTGTTTCGCCTTCCGAAGACAAAGTATCACCCGGGGTGATGGAGATGGTTCTCCAATGTCATTGTGAAATGAACTCATGGGCTTCCCTTAAATTGTCCAGGACAGGCTTCTTACACATTGATGAATACCCTCCAGATGTTAATCAAGGATTTGGCATTCCATCAGCAATAATAAGCTTTCCTGACTTCCATGCTGGTTTGCAATTTTCTGATAAATCTCGAAGCAAGTCACCACTGTTGTTTACAGTATTCGAAAAGAGTCTTGTTCTCTCTTACACAGAACTTTTACTTGTACCCTTGACGACTCCTGATTTCGGTATGCCATACAATGTCATCACAATTACATGCACAGTTTTTGCTTTGTATTTTGAATCTTTGCTAAATGTTCTCTGGAGAGGAGTTGGAGAGGAGGAAAGACTTTTGAAAAATAAAGATGCCAACAAAGCAGTGTTCCTTCACCAAGTGCTATCTAAACTATATCTGCCAAGCTTAGAGGCAGACCGTTGGAATCAACTATGCCCTCTCCCTTGTCATCGTCCTTTGTTAGAATTGCCGTTGCATGGCAATACTATTCATAATGATATCTTCCAACTAAGTAGTTTTACTTGTACTATAGTCTAA
>Glyma13g44520.1 sequence type=predicted peptide gene model=Glyma13g44520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high VQKYHIKTMELSFNKVDGTMIDGVDLIQYQAAMQSLQVGASWKNLSHSLSGLFCASINFVESSTTYSAPELAFQSALGSLRYGTLPREAVCTENLTPWLKLLPYHSDGSRSGINLEQTVTVVLQPNDQKAGMNHVSETKIQYNQAGPEDFRRNAGFELSVTPKRVHAEMETSSSILYEYPIKEYTETEQFDLGLTWKHPIVWYSPHAPLYASRFSMGSGNERGAIAISLKLIQGLVAINNVKERCKFQANVLQIVPLVLVDERPQALTDFVERMRVSPSEDKVSPGVMEMVLQCHCEMNSWASLKLSRTGFLHIDEYPPDVNQGFGIPSAIISFPDFHAGLQFSDKSRSKSPLLFTVFEKSLVLSYTELLLVPLTTPDFGMPYNVITITCTVFALYFESLLNVLWRGVGEEERLLKNKDANKAVFLHQVLSKLYLPSLEADRWNQLCPLPCHRPLLELPLHGNTIHNDIFQLSSFTCTIV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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