Glyma13g44470 - SoyBase

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Report for Sequence Feature Glyma13g44470

Feature Type:	gene_model
Chromosome:	Gm13
Start:	43887062
stop:	43898354
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g44470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15780	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). \| chr1:5430446-5435921 REVERSE LENGTH=1335	SoyBase	E_val: 0	ISS
GO:0001676	GO-bp	Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process	SoyBase	N/A	ISS
GO:0002213	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to insect	SoyBase	N/A	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
UniRef100_Q8H6Q7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CTV.22 n=1 Tax=Citrus trifoliata RepID=Q8H6Q7_PONTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B811	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B811 related cluster n=1 Tax=unknown RepID=UPI000233B811	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g44470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g44470

Paralog	Evidence	Comments
Glyma15g00790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g44470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g367700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g44470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g44470

Limit To All Plant Sequences

>Glyma13g44470.1   sequence type=CDS   gene model=Glyma13g44470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAACAATAATTGGAGACCTAATCAAGGCACTGAAGCCAATATGGATACTAGTGATTGGAGAGGTGGACTGCATCATGAGTCACGCCAAAGAATTGTTAACAAAATAATGGACACATTAAAAAGACATCTTCCTGTTACTGGTCAAGAGGGATTGCATGAACTTCAGAAGATTGCTCAAAGGTTTGAAGAGAAGATTTTTACTGCTGCAACAAGCCAGTCTGATTATCTACGGAAAATATCTTTGAAGATGCTTACGATGGAGACTAAATCCCAGGGCTCCATGGCCCCCAACTTACCTACAAATCAAGGTGGCCCTAGTAATAAACCTCCTGATCCAGGACTTGGTATTCCACCTCAAGTTCATAATCCAGGGCAGCAACATCCTATTCCTATGCCCAATCAACCTCCGAACCGTCAACAGCTTCTACCTCAGAACATTCAAAATAGTATTGCGTCTCAACCTTCGAATATAGCCCAGGCTCCCATCCAAAATGTTGGGCAGAATAATCCCAACATGCAGAATATTCCTGGTCAGAATTCGGTGGGGAGCACCATTAGCCAAAATTCCAACATGCAAAATATGTTTCCTGGTTCCCAGAGACAAATTCAAGGAAGGCAACAGGTTGTTCCCCAACAACAACAGCAGCAATCACAAAATTCGCAGCAGTATATCTACCAGCAACAAATGCAACATCAACTTTTGAGGCAGAAGCTCCAACAACAACAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGAATCTTCTACAATCAAATCAGTTGCAATCTTCTCAGCAACCTGCCATCCAAACATCAACTGTTATGCAGCAACCTTCCATGATGCAAGCATCTCTACCTAGCATTCAGCACAATCAACAGTCTAATAATCAACAATCAACACAGTCTGTGCTTCAGCAACACTCCCAAGTTATCAGGCAACAGCAACACCAACAGACTTCGATCATTCATCAACAACAAACACCGATGACTCAACAGTCAATATTACCTACACAACAGCAGCAGCAGCAGCAGCTTATGGGGGCACAGGCAAATGCACCAAACATGCACCATACCCAAATACTTGGGTCACAAAATAATGTTGGTGATTTGCAGCAGCCACAGAGGTTACTTACTCAGCAGAATAATCTTTCAAACCTGCAGCAGCAACAGTTAATAAATCAGCAAAACAACCTATCAAATATGCATCAACAGCTGGGTAATAATGTCCCTGGGTTACAGCCACAGCAGGTCCTTGGACCTCAATCTGGCAACTCAGGCATGCAAACAAGCCAGCACTCTGCACACGTGCTACAACAATCACAGCAAAATGCATCAAATTTGTTACCATCTCAAGTGCAGCAGTCACAGCCTCAGGCTCCACAGCAGCAATTGATGCCACAGATTCAATCTCAACCTGCACAATTGCAACAACAGTTGGGTTTGCAACAGCAACCAAATCCCTTGCAACGAGATGTGCAGCAAAGACTTCAGGCCTCAGGTCCCTTACTTCAACAATCAAATGTTCTTGATCAACAAAAGCAGTTGTACCAATCACAAAGACCCCTTCCAGAAACTTCATCCACTTCTCTGGATTCAACAGCACAGACTGGACAGTCAAGTGGAGGTGATTGGCAAGAAGAAGTGTATCAAAAGATCAAATCTATGAAGGAAAGTTACTTGCCAGAGTTGAATGAAATGTATCAAAAAATAGTTAGTAAACTTCAGCAGCATGATTCCCTTCCACAACAGCCCAAGTCAGATCAACTTGAAAAGCTGAAGGTATTTAAAATGATGTTGGAACGAATTATAACATTCCTTCAGGTTTCCAAGAGCAACATCTCACCTAATTTCAAGGAGAAACTGAATTCATATGAGAAGCAGATTATAAATTTTATAAATACAAATAGACCTAGGAAAAACATGCCTGGACATCTTCTCCCACCTCATATGCATTCCATGCCACAATCACAACCCCAAGTTACTCAAGTGCAGTCTCATGAAAATCAAATGAACCCTCAGTTGCAAACAACAAATATGCAAGGCTCTGTAGCAACAATGCAGCAGAATAATATGGCAGGCATGCAGCATAATTCTCTGTCTGGTGTATCTACAGTACAACAGAGTAAGATGAATTCAATGCAACCAAGTACCAATTTAGATTCAGGACCAGGAAATGCTGTGAACTCCCTGCAACAGGTTCCAGTGAGCTCACTTCAACAAAACCCTGTTAGTGCTCCTCAACAAACTAATGTTAACTCCTTATCTTCACAAGCTGGGGTTAATGTAGTCCAACCAAATCTTAATCCCCTTCAGCCAGGTTCTAGTATGCTTCAACACCAGCAACTAAAACAACAGCAGGAACAACAGATGTTACAGAATCAACAGTTAAAACAACAATACCAGCGGCAATTGTTGCAGAGAAAACAACAGCAGATGTTACAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAGCAACAACAACAGTTACACCAGACATCAAAGCAGCAGCTGCCTGCACAGTTGCCAACACATCAAATACAACAACTTCACCAAATGAATGATGCAAATGACATAAAGATGAGGCAAGGAATCGGTGTTAAGCCAGGGGTCTTTCAGCAGCATCTTACTTCCAGTCAACGCTCAGCTTATCCCCATCAACAGATGAAAGGGAGTCCTTTTCCTGTTTCTTCTCCTCAACTCCTTCAGGCCACATCTCCTCAGATTCCACAACACTCATCTCCTCAGGTTGACCAACAAAACCACCTTCCATCTCTCACAAAAGTTGCTACCCCTCTGCAATCTGCTAACTCACCTTTTGTGGTACCCACTCCTTCACCTCCCTTGGCTCCATCTCCCATGCCAGGGGATTCTGAAAAGCTGATTTCTGGTGTTTCATCGATCTCAAATGCTGCAAATATTGGATATCAACAAACAGGGGGTGCAGCAGCACCTGGTCAATCCCTTGCCATTGGAACGCCTGGAATATCAGCCTCTCCTTTACTTGCAGAGTTCACTGGTCCTGATGGTGCTCATGGTAATTCTTTAGCACCCACTTCTGGAAAGTCAACTGTTACTGAGCAGCCTATTGAGCGCCTAATAAAAGCGGTGAAATCAATGTCACCAAAAGCATTAAGTTCTGCTGTCAGTGATATTGGTTCAGTTGTCAGCATGAACGATAGAATAGCAGGATCAGCTCCAGGTAATGGATCCAGAGCTGCTGTTGGCGAAGATTTGGTTGCTATGACTAATTGTCGTCTTCAGGCTAGAAATTTTATCACCCAAGATGGTGCCAATGGAACTAGGAGGATGAAGCGCTACACCAATGCAACACCCTTGAATGTTGTAACTTCTGCTGGTAGCATGAATGACAGTATCAAGCAGTTAGCTGCTGAGGCTTCTGATTTGGATTCAACTGCAACATCTAGATTCAAGATGCCGAGGATTGAGGCTAATCATTCCCTTTTGGAAGAAATTAGGGAGGTTAATCAGCGACTTATTGACACAGTAGTAGACATAAGTAACGAAGAAGTTGATCCAACGGCAGCTGCTGCTGCTGCTGAAGGGACAGAAGGGACCATTGTCAAATGTTCTTACAATGCTGTGGCTCTCAGTCCGAGCTTAAAATCCCAATATGCTTCAGCACAGATGTCACCAATTCAACCCTTGCGATTGCTTGTTCCTACAAATTATCCTAATTGTTCCCCCATACTCCTAGACAAGTTTCCAGTTGAATCCAGTAAGGAGAATGAAGATCTTTCTGTGAAAGCGAAGTCAAGGTTTAGCATATCCTTGCGAAGTTTATCACAACCTATGTCCCTTGGGGAGATAGCAAGGACTTGGGATGTTTGTGCTCGCACTGTTATTTCTGAGCATGCACAGCAGAGCGGTGGTGGGAGTTTCAGCTCTAAGTATGGGACTTGGGAGAATTGCTTGACCACATGA

Predicted protein sequences of Glyma13g44470

Limit To All Plant Sequences

>Glyma13g44470.1   sequence type=predicted peptide   gene model=Glyma13g44470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNNNWRPNQGTEANMDTSDWRGGLHHESRQRIVNKIMDTLKRHLPVTGQEGLHELQKIAQRFEEKIFTAATSQSDYLRKISLKMLTMETKSQGSMAPNLPTNQGGPSNKPPDPGLGIPPQVHNPGQQHPIPMPNQPPNRQQLLPQNIQNSIASQPSNIAQAPIQNVGQNNPNMQNIPGQNSVGSTISQNSNMQNMFPGSQRQIQGRQQVVPQQQQQQSQNSQQYIYQQQMQHQLLRQKLQQQQQQQQQQQQQQQQQQQQQQQNLLQSNQLQSSQQPAIQTSTVMQQPSMMQASLPSIQHNQQSNNQQSTQSVLQQHSQVIRQQQHQQTSIIHQQQTPMTQQSILPTQQQQQQQLMGAQANAPNMHHTQILGSQNNVGDLQQPQRLLTQQNNLSNLQQQQLINQQNNLSNMHQQLGNNVPGLQPQQVLGPQSGNSGMQTSQHSAHVLQQSQQNASNLLPSQVQQSQPQAPQQQLMPQIQSQPAQLQQQLGLQQQPNPLQRDVQQRLQASGPLLQQSNVLDQQKQLYQSQRPLPETSSTSLDSTAQTGQSSGGDWQEEVYQKIKSMKESYLPELNEMYQKIVSKLQQHDSLPQQPKSDQLEKLKVFKMMLERIITFLQVSKSNISPNFKEKLNSYEKQIINFINTNRPRKNMPGHLLPPHMHSMPQSQPQVTQVQSHENQMNPQLQTTNMQGSVATMQQNNMAGMQHNSLSGVSTVQQSKMNSMQPSTNLDSGPGNAVNSLQQVPVSSLQQNPVSAPQQTNVNSLSSQAGVNVVQPNLNPLQPGSSMLQHQQLKQQQEQQMLQNQQLKQQYQRQLLQRKQQQMLQQQQQQQQQQQQQQQQLHQTSKQQLPAQLPTHQIQQLHQMNDANDIKMRQGIGVKPGVFQQHLTSSQRSAYPHQQMKGSPFPVSSPQLLQATSPQIPQHSSPQVDQQNHLPSLTKVATPLQSANSPFVVPTPSPPLAPSPMPGDSEKLISGVSSISNAANIGYQQTGGAAAPGQSLAIGTPGISASPLLAEFTGPDGAHGNSLAPTSGKSTVTEQPIERLIKAVKSMSPKALSSAVSDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGANGTRRMKRYTNATPLNVVTSAGSMNDSIKQLAAEASDLDSTATSRFKMPRIEANHSLLEEIREVNQRLIDTVVDISNEEVDPTAAAAAAEGTEGTIVKCSYNAVALSPSLKSQYASAQMSPIQPLRLLVPTNYPNCSPILLDKFPVESSKENEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEHAQQSGGGSFSSKYGTWENCLTT*

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