Glyma13g44380 - SoyBase

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Report for Sequence Feature Glyma13g44380

Feature Type:	gene_model
Chromosome:	Gm13
Start:	43823239
stop:	43826842
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g44380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02580	AT	Annotation by Michelle Graham. TAIR10: NADH-ubiquinone oxidoreductase 24 kDa subunit, putative \| chr4:1134586-1136906 FORWARD LENGTH=255	SoyBase	E_val: 7.00E-166	ISS
GO:0006120	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial electron transport, NADH to ubiquinone	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005747	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I	SoyBase	N/A	ISS
GO:0008137	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase (ubiquinone) activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0051287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD binding	SoyBase	N/A	ISS
KOG3196	KOG	NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit	JGI		ISS
PTHR10371	Panther	NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT	JGI		ISS
PF01257	PFAM	Respiratory-chain NADH dehydrogenase 24 Kd subunit	JGI		ISS
UniRef100_G7II91	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NADH-ubiquinone oxidoreductase 24 kDa subunit n=1 Tax=Medicago truncatula RepID=G7II91_MEDTR	SoyBase	E_val: 2.00E-172	ISS
UniRef100_I1M5V6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M5V6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g44380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g44380 not represented in the dataset	Glyma13g44380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g44380

Paralog	Evidence	Comments
Glyma15g00900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g44380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g367000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g44380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g44380

Limit To All Plant Sequences

>Glyma13g44380.3   sequence type=transcript   gene model=Glyma13g44380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTCACCCTCTCTACTCTCTCTCTCTCTCTCTCTCTGCGATCTGCTTCGTGTTGTAGCTAGCTCCTCGAAAATGCTGGCACGCCTCGCCGCGAGTCGCTTCAACGAGATCCGTCAGATTTTCCGTCAGCCTTCTAGGGCTTTCTCGACCGCTCTGAACTACCACCTTGACACACCGGACAACAACCCTAAACTTCCATGGGAATTCACCGAGGCCAATCAAGCAAAGGTTAAGGAGATTTTGTCTCACTATCCATCCAACTATAAGCAATCTGCTACAATTCCTCTTTTGGATCTTGCCCAGCAGCAGCATGGTGGCTGGCTCCCTGTTTCTGCAATGGATGCGGTAGCTAAGATTGTAGAGGTTCCTCCCATACGGGTCTATGAGGTTGCCACATTTTACTCCATGTTCAACCGAGCTAAGGTTGGGAAGTACCATCTGTTGGTTTGTGGAACAACACCTTGTATGATAAGAGGTTCACGAGGAATTGAAGAAGCCTTATTGAAACACTTGGGAGTGAAGCGCAATGAAGTAACACCAGATGGTTTGTTTTCTGTTGGAGAAATGGAATGCATGGGATGCTGTGTGAATGCTCCTATGATTACAGTGGCCGATTATTCAAATGGATCGGAGGGATATACTTATAATTACTTTGAAGATATAACCCCAGAGAAAGTAGTTGAGATAGTAGAAAAGCTGAGAAAGGGTGAGAAGCCACCGGTAAGGACATTGGCCATGATCTATTTCATTATTGTCCATGTTCTAGAAACTTACACCTTCTTGGATTATGAATCTGGTTTCTTTTTATTTAGCACGGCACCCAAAATCCCCGCCGAATTAAGAGTGGACCTGAAGGAGGGAACACTACTTTGTTAAGTGAGCCCAAGCCTCCTCCCTGCCGTGACCTGGATTCCTGCTGAAGTGTTGTATACTTTTTGCCTTCAATAATGTGAGGCTTGCATGTCTTGGAGCTTGCCTTAATTGAAACATTGTCAGACTGTTAGATGCTCAACCAATTTTTGTATGAATCATCCTGGATGGCTTCCGTTTCAAAAATTTGTTCCATAAACGCCATCCATAAATTTCTTGGCTTGTTTATTACTTACCAGCGTTATCTATGCGTTTCTGTACTCTGTACATTAATCATCATGAATGAAATTTGAGATTACGATGAA

>Glyma13g44380.4   sequence type=transcript   gene model=Glyma13g44380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGATCTGCTTCGTGTTGTAGCTAGCTCCTCGAAAATGCTGGCACGCCTCGCCGCGAGTCGCTTCAACGAGATCCGTCAGATTTTCCGTCAGCCTTCTAGGGCTTTCTCGACCGCTCTGAACTACCACCTTGACACACCGGACAACAACCCTAAACTTCCATGGGAATTCACCGAGGCCAATCAAGCAAAGGTTAAGGAGATTTTGTCTCACTATCCATCCAACTATAAGCAATCTGCTACAATTCCTCTTTTGGATCTTGCCCAGCAGCAGCATGGTGGCTGGCTCCCTGTTTCTGCAATGGATGCGGTAGCTAAGATTGTAGAGGTTCCTCCCATACGGGTCTATGAGGTTGCCACATTTTACTCCATGTTCAACCGAGCTAAGGTTGGGAAGTACCATCTGTTGGTTTGTGGAACAACACCTTGTATGATAAGAGGTTCACGAGGAATTGAAGAAGCCTTATTGAAACACTTGGGAGTGAAGCGCAATGAAGTAACACCAGATGGTTTGTTTTCTGTTGGAGAAATGGAATGCATGGAAGATATAACCCCAGAGAAAGTAGTTGAGATAGTAGAAAAGCTGAGAAAGGGTGAGAAGCCACCGCACGGCACCCAAAATCCCCGCCGAATTAAGAGTGGACCTGAAGGAGGGAACACTACTTTGTTAAGTGAGCCCAAGCCTCCTCCCTGCCGTGACCTGGATTCCTGCTGAAGTGTTGTATACTTTTTGCCTTCAATAATGTGAGGCTTGCATGTCTTGGAGCTTGCCTTAATTGAAACATTGTCAGACTGTTAGATGCTCAACCAATTTTTGTATGAATCATCCTGGATGGCTTCCGTTTCAAAAATTTGTTCCATAAACGCCATCCATAAATTTCTTGGCTTGTTTATTACTTACCAGCGTTATCTATGCGTTTCTGTACTCTGTACATTAATCATCATGAATGAAATTTGAGATTACGATGA

Coding sequences of Glyma13g44380

Limit To All Plant Sequences

>Glyma13g44380.1   sequence type=CDS   gene model=Glyma13g44380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTCTTACACTACACCCTTCACTTCACCCTCTCTACTCTCTCTCTCTCTCTCTCTCTGCGATCTGCTTCGTGTTGTAGCTAGCTCCTCGAAAATGCTGGCACGCCTCGCCGCGAGTCGCTTCAACGAGATCCGTCAGATTTTCCGTCAGCCTTCTAGGGCTTTCTCGACCGCTCTGAACTACCACCTTGACACACCGGACAACAACCCTAAACTTCCATGGGAATTCACCGAGGCCAATCAAGCAAAGGTTAAGGAGATTTTGTCTCACTATCCATCCAACTATAAGCAATCTGCTACAATTCCTCTTTTGGATCTTGCCCAGCAGCAGCATGGTGGCTGGCTCCCTGTTTCTGCAATGGATGCGGTAGCTAAGATTGTAGAGGTTCCTCCCATACGGGTCTATGAGGTTGCCACATTTTACTCCATGTTCAACCGAGCTAAGGTTGGGAAGTACCATCTGTTGGTTTGTGGAACAACACCTTGTATGATAAGAGGTTCACGAGGAATTGAAGAAGCCTTATTGAAACACTTGGGAGTGAAGCGCAATGAAGTAACACCAGATGGTTTGTTTTCTGTTGGAGAAATGGAATGCATGGGATGCTGTGTGAATGCTCCTATGATTACAGTGGCCGATTATTCAAATGGATCGGAGGGATATACTTATAATTACTTTGAAGATATAACCCCAGAGAAAGTAGTTGAGATAGTAGAAAAGCTGAGAAAGGGTGAGAAGCCACCGCACGGCACCCAAAATCCCCGCCGAATTAAGAGTGGACCTGAAGGAGGGAACACTACTTTGTTAAGTGAGCCCAAGCCTCCTCCCTGCCGTGACCTGGATTCCTGCTGA

>Glyma13g44380.3   sequence type=CDS   gene model=Glyma13g44380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGCACGCCTCGCCGCGAGTCGCTTCAACGAGATCCGTCAGATTTTCCGTCAGCCTTCTAGGGCTTTCTCGACCGCTCTGAACTACCACCTTGACACACCGGACAACAACCCTAAACTTCCATGGGAATTCACCGAGGCCAATCAAGCAAAGGTTAAGGAGATTTTGTCTCACTATCCATCCAACTATAAGCAATCTGCTACAATTCCTCTTTTGGATCTTGCCCAGCAGCAGCATGGTGGCTGGCTCCCTGTTTCTGCAATGGATGCGGTAGCTAAGATTGTAGAGGTTCCTCCCATACGGGTCTATGAGGTTGCCACATTTTACTCCATGTTCAACCGAGCTAAGGTTGGGAAGTACCATCTGTTGGTTTGTGGAACAACACCTTGTATGATAAGAGGTTCACGAGGAATTGAAGAAGCCTTATTGAAACACTTGGGAGTGAAGCGCAATGAAGTAACACCAGATGGTTTGTTTTCTGTTGGAGAAATGGAATGCATGGGATGCTGTGTGAATGCTCCTATGATTACAGTGGCCGATTATTCAAATGGATCGGAGGGATATACTTATAATTACTTTGAAGATATAACCCCAGAGAAAGTAGTTGAGATAGTAGAAAAGCTGAGAAAGGGTGAGAAGCCACCGGTAAGGACATTGGCCATGATCTATTTCATTATTGTCCATGTTCTAGAAACTTACACCTTCTTGGATTATGAATCTGGTTTCTTTTTATTTAGCACGGCACCCAAAATCCCCGCCGAATTAAGAGTGGACCTGAAGGAGGGAACACTACTTTGTTAA

>Glyma13g44380.4   sequence type=CDS   gene model=Glyma13g44380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGCACGCCTCGCCGCGAGTCGCTTCAACGAGATCCGTCAGATTTTCCGTCAGCCTTCTAGGGCTTTCTCGACCGCTCTGAACTACCACCTTGACACACCGGACAACAACCCTAAACTTCCATGGGAATTCACCGAGGCCAATCAAGCAAAGGTTAAGGAGATTTTGTCTCACTATCCATCCAACTATAAGCAATCTGCTACAATTCCTCTTTTGGATCTTGCCCAGCAGCAGCATGGTGGCTGGCTCCCTGTTTCTGCAATGGATGCGGTAGCTAAGATTGTAGAGGTTCCTCCCATACGGGTCTATGAGGTTGCCACATTTTACTCCATGTTCAACCGAGCTAAGGTTGGGAAGTACCATCTGTTGGTTTGTGGAACAACACCTTGTATGATAAGAGGTTCACGAGGAATTGAAGAAGCCTTATTGAAACACTTGGGAGTGAAGCGCAATGAAGTAACACCAGATGGTTTGTTTTCTGTTGGAGAAATGGAATGCATGGAAGATATAACCCCAGAGAAAGTAGTTGAGATAGTAGAAAAGCTGAGAAAGGGTGAGAAGCCACCGCACGGCACCCAAAATCCCCGCCGAATTAAGAGTGGACCTGAAGGAGGGAACACTACTTTGTTAAGTGAGCCCAAGCCTCCTCCCTGCCGTGACCTGGATTCCTGCTGA

Predicted protein sequences of Glyma13g44380

Limit To All Plant Sequences

>Glyma13g44380.1   sequence type=predicted peptide   gene model=Glyma13g44380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSYTTPFTSPSLLSLSLSLCDLLRVVASSSKMLARLAASRFNEIRQIFRQPSRAFSTALNYHLDTPDNNPKLPWEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVSAMDAVAKIVEVPPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGSRGIEEALLKHLGVKRNEVTPDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDITPEKVVEIVEKLRKGEKPPHGTQNPRRIKSGPEGGNTTLLSEPKPPPCRDLDSC*

>Glyma13g44380.3   sequence type=predicted peptide   gene model=Glyma13g44380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLARLAASRFNEIRQIFRQPSRAFSTALNYHLDTPDNNPKLPWEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVSAMDAVAKIVEVPPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGSRGIEEALLKHLGVKRNEVTPDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDITPEKVVEIVEKLRKGEKPPVRTLAMIYFIIVHVLETYTFLDYESGFFLFSTAPKIPAELRVDLKEGTLLC*

>Glyma13g44380.4   sequence type=predicted peptide   gene model=Glyma13g44380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLARLAASRFNEIRQIFRQPSRAFSTALNYHLDTPDNNPKLPWEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVSAMDAVAKIVEVPPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGSRGIEEALLKHLGVKRNEVTPDGLFSVGEMECMEDITPEKVVEIVEKLRKGEKPPHGTQNPRRIKSGPEGGNTTLLSEPKPPPCRDLDSC*

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