SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G52500 | AT | Annotation by Michelle Graham. TAIR10: MUTM homolog-1 | chr1:19560043-19562855 FORWARD LENGTH=390 | SoyBase | E_val: 5.00E-171 | ISS |
| GO:0000741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: karyogamy | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: base-excision repair | SoyBase | N/A | ISS |
| GO:0006289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair | SoyBase | N/A | ISS |
| GO:0006312 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic recombination | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003684 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding | SoyBase | N/A | ISS |
| GO:0003906 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0008534 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidized purine nucleobase lesion DNA N-glycosylase activity | SoyBase | N/A | ISS |
| GO:0016799 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing N-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0019104 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA N-glycosylase activity | SoyBase | N/A | ISS |
| PTHR22993 | Panther | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE | JGI | ISS | |
| PTHR22993:SF4 | Panther | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE (FAPY-DNA GLYCOSYLASE) | JGI | ISS | |
| PF01149 | PFAM | Formamidopyrimidine-DNA glycosylase N-terminal domain | JGI | ISS | |
| PF06831 | PFAM | Formamidopyrimidine-DNA glycosylase H2TH domain | JGI | ISS | |
| UniRef100_G7II90 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Formamidopyrimidine-DNA glycosylase n=1 Tax=Medicago truncatula RepID=G7II90_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M5V4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5V4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g44360 not represented in the dataset |
Glyma13g44360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g366800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g44360.1 sequence type=CDS gene model=Glyma13g44360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGGAGCTTCCAGAGGTAGAGGCGGCGAGGAGGGCCGTTGAGTATAACTGCGTCGGAAAGAGGATAACAAAGTGCGTTGTCGCCGATGATTCTAAGGTGATCCATGGTGTCTCTCCCTCCGACTTCCAAGCTTCCGTCCTCGGCAAGCTCATCGTCGCTGCTCACCGTAAGGGAAAGAACATGTGGCTTCAACTTGATTCTCCTCCTTTTCCTTCCTTCCAATTCGGTATGGCTGGTGCTATATACATTAAAGGAGCTGCAGTAACAAACTATAAAAGGTCTGCTGTAAAAGACGAGGATGAGTGGCCCTCAAAATATTCAAAAATTTTCATTGAGTTAGATGATGGTTTGGAGTTGTCTTTCACTGACAAAAGGCGATTTGCTAAAGTTCGTCTGCTCAAAGATCCGACATCAGTGCCTCCCATATCCGAGCTTGGTCCTGATGCACTTTTCGAACCTATGACACTTGAGAAGTTTACGGAGTCTTTGCACAAGAAGAAAACTGAAATCAAGGCTTTATTACTTGATCAAAGCTTTATTTCAGGTATTGGAAATTGGGTGGCAGATGAAGTGTTATACCAAGCAAGAATTCATCCGCGGCAGGTGGCTTCTAGCCTGTCTAATGAAAGCTGCTCAAATTTGAGCAAGTGCATTAAAGAGGTCATTGAAAAAGCAATTGAAGTTGGAGCAGAAAGTAGTCAGTATCCCACCAATTGGATATTTCATTCACGTGAAAAGAAGCCCGGCAAGGCTTTTGTTGATGGGAAAAAAATTGACTTCATCACAGCTGGTGGCAGGACAACTGCTTACGTGCCAGAGTTGCAAAAGCTAAGTGGATCTCTAGATGTAAAAGAAACTGGTAAGCCTAATAAAAGGCAAGCCTCAAAGAAAGTAAGGGTAGATGATGACACTGAAAAACCAACAAATGGGGAAGTGGACGATTTGGGAAGTGTCAAATCAAAGAAGGGGACAAAGGCTGGAGCTAAAGGTAGGAAGCCTTCAAAAAAGAAAAAGTCAGGGGGAAGTGATGAAGACAAAGATAGTAGTGATGTTGGTACTGATTATGATAGTGATCAAGTTGAAAAGAAGAATCCAGGCAACGTGGCTAGTAGGAAACAAGCTGGGGGAGAGAAGCAATCAAACAGGAGAGTTCAAAGCAATCAAACTAGTTGGAGTGCTAAAAGGAAAGCTAAGTAA
>Glyma13g44360.1 sequence type=predicted peptide gene model=Glyma13g44360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPELPEVEAARRAVEYNCVGKRITKCVVADDSKVIHGVSPSDFQASVLGKLIVAAHRKGKNMWLQLDSPPFPSFQFGMAGAIYIKGAAVTNYKRSAVKDEDEWPSKYSKIFIELDDGLELSFTDKRRFAKVRLLKDPTSVPPISELGPDALFEPMTLEKFTESLHKKKTEIKALLLDQSFISGIGNWVADEVLYQARIHPRQVASSLSNESCSNLSKCIKEVIEKAIEVGAESSQYPTNWIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLSGSLDVKETGKPNKRQASKKVRVDDDTEKPTNGEVDDLGSVKSKKGTKAGAKGRKPSKKKKSGGSDEDKDSSDVGTDYDSDQVEKKNPGNVASRKQAGGEKQSNRRVQSNQTSWSAKRKAK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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