Glyma13g44351 - SoyBase

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Report for Sequence Feature Glyma13g44351

Feature Type:	gene_model
Chromosome:	Gm13
Start:	43806283
stop:	43809707
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g44351

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G42170	AT	Annotation by Michelle Graham. TAIR10: BED zinc finger ;hAT family dimerisation domain \| chr3:14321838-14323928 FORWARD LENGTH=696	SoyBase	E_val: 0	ISS
GO:0009791	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
KOG1121	KOG	Tam3-transposase (Ac family)	JGI		ISS
PTHR10775	Panther	AC-LIKE TRANSPOSASE-RELATED	JGI		ISS
PTHR10775:SF11	Panther	AC-LIKE TRANSPOSASE	JGI		ISS
PF02892	PFAM	BED zinc finger	JGI		ISS
PF05699	PFAM	hAT family dimerisation domain	JGI		ISS
UniRef100_I1KGZ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGZ4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q287V4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HAT-like transposase n=1 Tax=Capsella rubella RepID=Q287V4_9BRAS	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g44351

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g44351 not represented in the dataset	Glyma13g44351 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g44351

Paralog	Evidence	Comments
Glyma15g00911	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g44351 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g366700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g44351

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g44351

Limit To All Plant Sequences

>Glyma13g44351.2   sequence type=transcript   gene model=Glyma13g44351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGAAACGTGTTTGAAACCCTTAATTGGGTTATTGGCATTGGCATTGCCTGGGAGTGACTGAGTAGTAAGTGGCGCTTCCCTTCCATTCCAACACGTTCGTTCGTTCGTTCACTGCCTTCTCCTCCTTAGGCTACGTTCGCCGCCGCAGCCCGGAAAGGATTCAACCTTCTGTCATGTCAATGGAGTATGATATACCTGATTCTGAAATACAACAAAATAGCAGGAGAAGAAAGAAATCTACTGTCTGGGAACACTTCACTGTGAAAATGGATGGACCTGGATGTGCCAGGGCTTACTGTAAAAGATGCCAAAAATCATTTGCTTATCTAAAAGATTCAAAACAATCTGGCACCAGTCATCTCAAGAGACACATTACTTTGGGAATCTGTCAGAAAAATCAACGAATACCATGTTCCAAAACCGATGCCAATCCACCAAAGAAACGAGCAAGAGCAAAACCTTGTTTTGCTGCTATCTCATTTGATCAGGAGCGTTGCAACAGTAAGATTGCTAAAATGATTATTTTACATGACTATCCACTTCATATTGTGGAACACCAAGGTTTCATTGATTTTGTTCGAGCACTACAACCCCAGTTCAATCCACTGAGCTTTAATGCTATTCAAGGGGATTGTGTCTCTATGTACCTCAGAGAGAAGCAAAACCTATTGAATCTTATTGATGGGATTCCTGGACGAGTCAACCTCACCTTGGACTTATGGACTTCAAACCAAACATCGGCCTATGTTTTTGTTCGAGGGCACTTCGTTGATGGTGATTGGAACTTACATCATCCTATACTTAATGTATTCATGGTACCATTTCCTGATTCTGATGGTTCCTTAAATCAAACTATAGTGAACTGCCTAAGTGATTGGCATTTGAAGGGTCGGCTATTTACTCTTGCACTTGATAAATTCTTCTCCAATGAGACTTTGATGGGAAAGCTGAGAAGTCTCCTCTCTGTTAATAACCCTGTGATCCTCAATGGTCAATTGTTAAGCCAGAACTGTTATGCTCGTATGCTTAGTCGCCTTGCATTAGATGCACTATCAGCTATGGGAGAAACTATTGATAAAGTTCGGGAGAGTGTAAAGTATGTGAAATCTTCTAAGTCTAATGAAGGGAATTTTTTGAATCTGAGGCAACAACTTCAAGTTCCTAGTACGACGAACCTTTTAATTGATGACCAAAATAAATGGGACACAATATACCACATGCTTGTTGCTGCTTGTGAATTAAAGGAAGTTTTTGCTTGCTTTGATGCCTCTAATCCTGATTTCAGAACAACTCTAACAATGGATGACTGGAAGCAGGTGGAAAAACTCTGTGCATATCTGAAGTACTTGTATGATGCAGCTAACATTTTAACTTTTCAACCATACCCAACTGCAAATGTATTTTTCCTTGAAGTGTCCAAACTTCAGGTGGAGTTGACTTGTGCTGCCTTAAGCCAGGATCCTTTCTGTAGTCGTTTGATTATGCCTTTGCAAGAGAAGTTTGACCAATATTGGAGAGAAAGCTGCTTGGTCTTGGCTGTTGCTGTAGCCATGGATCCAAGATATAAAATGAAAATTGTGGAATCCACTTTTGCTAAGATATTTGGTGAGAATGCTGACCAATGGATAAGAATTGTTGAGGATGGTCTTCAAGAGCTGTTCCTTGAATATAATATCATACAAGTGCTTCCTTTTGCAGCAACAAATGATGATGAAGGGAATGAGGCTATGATAAAGACTGAGACATCTCAAGAATTTGATGGATCTCTTTTTGGTGCTGATGATGGACTTTCTGATTTTGAATTTTATATATCCGATTTTACATGTAACCAGCAATTTAAGACGGAATTGGATGAATATCTTGAAGAGCCTCTAGAACCCAGAGTACAAGAATTTGATATTCTGAGCTGGTGGAGAATAAACGGATTGAAGTACCCAACATTGTCTAGACTAGCATCTGATATTTTGTGTATGCCAATATCCACCCTCTCTGCAGATGCTGTTTTTGATACAGAAATTAGAAAAATGGATAGCTACCGGACTTCATTAGACTCCTTGACTCTTGAGGCCCTTATTTGTACCAAGGACTGGTTCCAGTATAAATCATTACCCATGAATGTTCCAAATGCACTTGTCAAAGTTGAATGTTAGGTATAGGTTTCCTTGGAATAGATTCTCAACTAGCTTTTAGGTATTTAATTTTTGGTGCTGTCATTCAGGTCAATTAACTTTTGTGATTAATTGTCCGATTTTTTGTTACTTGTTTATAATATAGAGTTGATATTGTTCTAATCTTTTGTCCAAGCAAAGTATCAACTGTATTCACAGGTTTAACCAAAAACCTGGAATTTGGTTATATTTTGCCTTTGAATAGACTTTAACCTCATGTCACGGATGTAAAAACCTGGAATTTGGTTATATTTTGCCTTTGAATAGACTTTAACC

Coding sequences of Glyma13g44351

Limit To All Plant Sequences

>Glyma13g44351.1   sequence type=CDS   gene model=Glyma13g44351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGGAGTATGATATACCTGATTCTGAAATACAACAAAATAGCAGGAGAAGAAAGAAATCTACTGTCTGGGAACACTTCACTGTGAAAATGGATGGACCTGGATGTGCCAGGGCTTACTGTAAAAGATGCCAAAAATCATTTGCTTATCTAAAAGATTCAAAACAATCTGGCACCAGTCATCTCAAGAGACACATTACTTTGGGAATCTGTCAGAAAAATCAACGAATACCATGTTCCAAAACCGATGCCAATCCACCAAAGAAACGAGCAAGAGCAAAACCTTGTTTTGCTGCTATCTCATTTGATCAGGAGCGTTGCAACAGTAAGATTGCTAAAATGATTATTTTACATGACTATCCACTTCATATTGTGGAACACCAAGGTTTCATTGATTTTGTTCGAGCACTACAACCCCAGTTCAATCCACTGAGCTTTAATGCTATTCAAGGGGATTGTGTCTCTATGTACCTCAGAGAGAAGCAAAACCTATTGAATCTTATTGATGGGATTCCTGGACGAGTCAACCTCACCTTGGACTTATGGACTTCAAACCAAACATCGGCCTATGTTTTTGTTCGAGGGCACTTCGTTGATGGTGATTGGAACTTACATCATCCTATACTTAATGTATTCATGGTACCATTTCCTGATTCTGATGGTTCCTTAAATCAAACTATAGTGAACTGCCTAAGTGATTGGCATTTGAAGGGTCGGCTATTTACTCTTGCACTTGATAAATTCTTCTCCAATGAGACTTTGATGGGAAAGCTGAGAAGTCTCCTCTCTGTTAATAACCCTGTGATCCTCAATGGTCAATTGTTAAGCCAGAACTGTTATGCTCGTATGCTTAGTCGCCTTGCATTAGATGCACTATCAGCTATGGGAGAAACTATTGATAAAGTTCGGGAGAGTGTAAAGTATGTGAAATCTTCTAAGTCTAATGAAGGGAATTTTTTGAATCTGAGGCAACAACTTCAAGTTCCTAGTACGACGAACCTTTTAATTGATGACCAAAATAAATGGGACACAATATACCACATGCTTGTTGCTGCTTGTGAATTAAAGGAAGTTTTTGCTTGCTTTGATGCCTCTAATCCTGATTTCAGAACAACTCTAACAATGGATGACTGGAAGCAGGTGGAAAAACTCTGTGCATATCTGAAGTACTTGTATGATGCAGCTAACATTTTAACTTTTCAACCATACCCAACTGCAAATGTATTTTTCCTTGAAGTGTCCAAACTTCAGGTGGAGTTGACTTGTGCTGCCTTAAGCCAGGATCCTTTCTGTAGTCGTTTGATTATGCCTTTGCAAGAGAAGTTTGACCAATATTGGAGAGAAAGCTGCTTGGTCTTGGCTGTTGCTGTAGCCATGGATCCAAGATATAAAATGAAAATTGTGGAATCCACTTTTGCTAAGATATTTGGTGAGAATGCTGACCAATGGATAAGAATTGTTGAGGATGGTCTTCAAGAGCTGTTCCTTGAATATAATATCATACAAGTGCTTCCTTTTGCAGCAACAAATGATGATGAAGGGAATGAGGCTATGATAAAGACTGAGACATCTCAAGAATTTGATGGATCTCTTTTTGGTGCTGATGATGGACTTTCTGATTTTGAATTTTATATATCCGATTTTACATGTAACCAGCAATTTAAGACGGAATTGGATGAATATCTTGAAGAGCCTCTAGAACCCAGAGTACAAGAATTTGATATTCTGAGCTGGTGGAGAATAAACGGATTGAAGTACCCAACATTGTCTAGACTAGCATCTGATATTTTGTGTATGCCAATATCCACCCTCTCTGCAGATGCTGTTTTTGATACAGAAATTAGAAAAATGGATAGCTACCGGACTTCATTAGACTCCTTGACTCTTGAGGCCCTTATTTGTACCAAGGACTGGTTCCAGTATAAATCATTACCCATGAATGTTCCAAATGCACTTGTCAAAGTTGAATGTTAG

>Glyma13g44351.2   sequence type=CDS   gene model=Glyma13g44351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGGAGTATGATATACCTGATTCTGAAATACAACAAAATAGCAGGAGAAGAAAGAAATCTACTGTCTGGGAACACTTCACTGTGAAAATGGATGGACCTGGATGTGCCAGGGCTTACTGTAAAAGATGCCAAAAATCATTTGCTTATCTAAAAGATTCAAAACAATCTGGCACCAGTCATCTCAAGAGACACATTACTTTGGGAATCTGTCAGAAAAATCAACGAATACCATGTTCCAAAACCGATGCCAATCCACCAAAGAAACGAGCAAGAGCAAAACCTTGTTTTGCTGCTATCTCATTTGATCAGGAGCGTTGCAACAGTAAGATTGCTAAAATGATTATTTTACATGACTATCCACTTCATATTGTGGAACACCAAGGTTTCATTGATTTTGTTCGAGCACTACAACCCCAGTTCAATCCACTGAGCTTTAATGCTATTCAAGGGGATTGTGTCTCTATGTACCTCAGAGAGAAGCAAAACCTATTGAATCTTATTGATGGGATTCCTGGACGAGTCAACCTCACCTTGGACTTATGGACTTCAAACCAAACATCGGCCTATGTTTTTGTTCGAGGGCACTTCGTTGATGGTGATTGGAACTTACATCATCCTATACTTAATGTATTCATGGTACCATTTCCTGATTCTGATGGTTCCTTAAATCAAACTATAGTGAACTGCCTAAGTGATTGGCATTTGAAGGGTCGGCTATTTACTCTTGCACTTGATAAATTCTTCTCCAATGAGACTTTGATGGGAAAGCTGAGAAGTCTCCTCTCTGTTAATAACCCTGTGATCCTCAATGGTCAATTGTTAAGCCAGAACTGTTATGCTCGTATGCTTAGTCGCCTTGCATTAGATGCACTATCAGCTATGGGAGAAACTATTGATAAAGTTCGGGAGAGTGTAAAGTATGTGAAATCTTCTAAGTCTAATGAAGGGAATTTTTTGAATCTGAGGCAACAACTTCAAGTTCCTAGTACGACGAACCTTTTAATTGATGACCAAAATAAATGGGACACAATATACCACATGCTTGTTGCTGCTTGTGAATTAAAGGAAGTTTTTGCTTGCTTTGATGCCTCTAATCCTGATTTCAGAACAACTCTAACAATGGATGACTGGAAGCAGGTGGAAAAACTCTGTGCATATCTGAAGTACTTGTATGATGCAGCTAACATTTTAACTTTTCAACCATACCCAACTGCAAATGTATTTTTCCTTGAAGTGTCCAAACTTCAGGTGGAGTTGACTTGTGCTGCCTTAAGCCAGGATCCTTTCTGTAGTCGTTTGATTATGCCTTTGCAAGAGAAGTTTGACCAATATTGGAGAGAAAGCTGCTTGGTCTTGGCTGTTGCTGTAGCCATGGATCCAAGATATAAAATGAAAATTGTGGAATCCACTTTTGCTAAGATATTTGGTGAGAATGCTGACCAATGGATAAGAATTGTTGAGGATGGTCTTCAAGAGCTGTTCCTTGAATATAATATCATACAAGTGCTTCCTTTTGCAGCAACAAATGATGATGAAGGGAATGAGGCTATGATAAAGACTGAGACATCTCAAGAATTTGATGGATCTCTTTTTGGTGCTGATGATGGACTTTCTGATTTTGAATTTTATATATCCGATTTTACATGTAACCAGCAATTTAAGACGGAATTGGATGAATATCTTGAAGAGCCTCTAGAACCCAGAGTACAAGAATTTGATATTCTGAGCTGGTGGAGAATAAACGGATTGAAGTACCCAACATTGTCTAGACTAGCATCTGATATTTTGTGTATGCCAATATCCACCCTCTCTGCAGATGCTGTTTTTGATACAGAAATTAGAAAAATGGATAGCTACCGGACTTCATTAGACTCCTTGACTCTTGAGGCCCTTATTTGTACCAAGGACTGGTTCCAGTATAAATCATTACCCATGAATGTTCCAAATGCACTTGTCAAAGTTGAATGTTAG

Predicted protein sequences of Glyma13g44351

Limit To All Plant Sequences

>Glyma13g44351.1   sequence type=predicted peptide   gene model=Glyma13g44351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMEYDIPDSEIQQNSRRRKKSTVWEHFTVKMDGPGCARAYCKRCQKSFAYLKDSKQSGTSHLKRHITLGICQKNQRIPCSKTDANPPKKRARAKPCFAAISFDQERCNSKIAKMIILHDYPLHIVEHQGFIDFVRALQPQFNPLSFNAIQGDCVSMYLREKQNLLNLIDGIPGRVNLTLDLWTSNQTSAYVFVRGHFVDGDWNLHHPILNVFMVPFPDSDGSLNQTIVNCLSDWHLKGRLFTLALDKFFSNETLMGKLRSLLSVNNPVILNGQLLSQNCYARMLSRLALDALSAMGETIDKVRESVKYVKSSKSNEGNFLNLRQQLQVPSTTNLLIDDQNKWDTIYHMLVAACELKEVFACFDASNPDFRTTLTMDDWKQVEKLCAYLKYLYDAANILTFQPYPTANVFFLEVSKLQVELTCAALSQDPFCSRLIMPLQEKFDQYWRESCLVLAVAVAMDPRYKMKIVESTFAKIFGENADQWIRIVEDGLQELFLEYNIIQVLPFAATNDDEGNEAMIKTETSQEFDGSLFGADDGLSDFEFYISDFTCNQQFKTELDEYLEEPLEPRVQEFDILSWWRINGLKYPTLSRLASDILCMPISTLSADAVFDTEIRKMDSYRTSLDSLTLEALICTKDWFQYKSLPMNVPNALVKVEC*

>Glyma13g44351.2   sequence type=predicted peptide   gene model=Glyma13g44351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMEYDIPDSEIQQNSRRRKKSTVWEHFTVKMDGPGCARAYCKRCQKSFAYLKDSKQSGTSHLKRHITLGICQKNQRIPCSKTDANPPKKRARAKPCFAAISFDQERCNSKIAKMIILHDYPLHIVEHQGFIDFVRALQPQFNPLSFNAIQGDCVSMYLREKQNLLNLIDGIPGRVNLTLDLWTSNQTSAYVFVRGHFVDGDWNLHHPILNVFMVPFPDSDGSLNQTIVNCLSDWHLKGRLFTLALDKFFSNETLMGKLRSLLSVNNPVILNGQLLSQNCYARMLSRLALDALSAMGETIDKVRESVKYVKSSKSNEGNFLNLRQQLQVPSTTNLLIDDQNKWDTIYHMLVAACELKEVFACFDASNPDFRTTLTMDDWKQVEKLCAYLKYLYDAANILTFQPYPTANVFFLEVSKLQVELTCAALSQDPFCSRLIMPLQEKFDQYWRESCLVLAVAVAMDPRYKMKIVESTFAKIFGENADQWIRIVEDGLQELFLEYNIIQVLPFAATNDDEGNEAMIKTETSQEFDGSLFGADDGLSDFEFYISDFTCNQQFKTELDEYLEEPLEPRVQEFDILSWWRINGLKYPTLSRLASDILCMPISTLSADAVFDTEIRKMDSYRTSLDSLTLEALICTKDWFQYKSLPMNVPNALVKVEC*

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