Report for Sequence Feature Glyma13g44340
Feature Type: gene_model
Chromosome: Gm13
Start: 43798157
stop: 43803057
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g44340
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G15920 AT
Annotation by Michelle Graham. TAIR10: Phox (PX) domain-containing protein | chr3:5383768-5386955 REVERSE LENGTH=755
SoyBase E_val: 0 ISS
GO:0007154 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell communication
SoyBase N/A ISS
GO:0007165 GO-bp
Annotation by Michelle Graham. GO Biological Process: signal transduction
SoyBase N/A ISS
GO:0035556 GO-bp
Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0035091 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding
SoyBase N/A ISS
PTHR10555 Panther
SORTING NEXIN
JGI ISS
PTHR10555:SF65 Panther
PHOX (PX) DOMAIN-CONTAINING PROTEIN
JGI ISS
PF00787 PFAM
PX domain
JGI ISS
UniRef100_D7L4Y9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phox domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L4Y9_ARALL
SoyBase E_val: 0 ISS
UniRef100_I1M5V3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5V3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g44340
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g44340
Paralog Evidence Comments
Glyma15g00920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g44340 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g366600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g44340
Coding sequences of Glyma13g44340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g44340.1 sequence type=CDS gene model=Glyma13g44340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCATATGCACTGGTTGGGTCCCGACGTACCTGTGTTCGACCCCAATTTCACTTACAATCATCATCGTCCCTACTTATACGACGATGACCTCTTTCCAAACGACGCCGTTTCGGCCCGTCGCCACGATGCCGTTTCAGCCCATCACCACGACGGAACCTCACCTCTCCCACTGGGCATGGATTGGAGCCCTCCGCCGCGCCTATGGGAGGGTCGCAGCACTGTTTGGCCGCGTCATCCTCCCACCGGATGGAGCTTCTGCGTCACGCTTCCTTCATGGGTTACCGCTCCCCAATCCCCTCCTTCTGATCCCGTCGCCTTTTTTAGGGTTCAAGTCGGTGTACAATCTCCCCAAGCAATCACCACTTCTCGACTATTACTACGCAGATTTAGTGATTTCGTCAATCTCTTTTCTCAACTGAAAAAGGAATTTCCCATAAAAGATCTGCCTACACCTCCACCCAAAAAGATACTCAGAATTAAAAGTCACACTGTGTTGGAAGAGCGACGCCTTTTATTAGCTGATTGGATGGAAAAGTTGTTATCGGACGTTGATGTATCAAGAAGTGCCCCGGTGGCAATATTTCTTGAGCTAGAAGCTGCTGCTAGATCATCATTTCATGATGTGAACGAGCATGTTTCGGATGAAGCATCTGCCAATGCTACTACACCCTCACAAATGATCCAAGATACCTCACCTGGTTCTGTAAAAGCTCATGGTTCATCTGCAGCAATAGTTCCTGGTAACGATGAAGTTTCTGAGCTGGGAACACCACAACATGGAATGGATAACCGTTCTGATCAAATTATGGATAATTCAACATTGGAACATGGCTTAATTAATCCAACTGAAACGGATGTTCATTATGCCACATCCAGCGAAAACTTCGTTTATAAGGATAATATTACAGACAAAGTCACTGGGTATACTGCTGATGCTATAGCTCTTCACCTAGATGGAACTGAGTTTACACCTGCTGTACGAGATTATAACTTGAATGCTCATGTTAAGAGATTGTCAACAGAAAGCATTAGAAGTGACTTAAGTTCTCTAAGGAATACTGAAACATCAAATTTAACTACGACCACTTTGGTTCAGGATGCTTCACATAACCTTGCTGGGAGCCATGAAGTCTCAAGAAATTCAGATTTATTTTTGACTTTTCCATTGGATGAGCGGCACAAGTTGAACAAAATTCTTAATACCCAGAAACAGAGATTGGTCACTGCAAAAGCTGATGTTGAAGATCTTATAGCAAGATTGAATCAAGAAATGGCTGCAAGACAATATCTTGTGACAAAGGTCAAAGATTTGGAAGTTGAACTTGAAACAACTCGACTGAACTGCCGAGAAAACATGCAGCAGGCTGTTTTGACTGAAAAAGAAAGGTTTACACAAATGCAGTGGGATATGGAGGAACTTCGGAGGAAATGCCTGGAGACAGAAATGAAATTGAAGTTGGAAGAGGATGAAAGGCTGCTAGCAGAATCTACGAAAGAATCTGTCATTCAGGAGAAGCAAATGTTGCAGCAAGAGCTAGATGTAGCTAGAGAACAATTTAAGCACTTGCAAAAACATCATGATGAGTTTGAGATGAAATCAAAGACAGATTTGAAGGTTCTAATAAAGGAGGTAAAATCCCTTAGAAATTCTGAGTTAGAACTGAAACAGCAGCTAAGTGAATTGATGAAGGAGAAGTTAGATTTGGAGAGAATCCTCCAGAAGGAAAAGCAAAGAATGGAAAATTCACATAATGCAAATACAAAGTTGCTGCATGAGTGTGCAATCCTTCAGAAGAGGCTTCGGGAGTGTAGTGTAAATTTCCTTGTTGAAGAGGAAGATAAACTAAATATCGACACTTTGCCATCTGATGCTCTGGATTTATTAGCAACATCAGATAATCGGATTGGTCTCTTGCTTGCAGAGGCACAGCTCTTGGCACAAGATGTAGAAGATACTGTTGTTGCTGTTGAAGAGACCCGGGATATAACCACAGACAATACTGGGAAAACTCATGATGAATTGAGAAAGATGCTGGCACATATGTTTGTTGACAATGCCAGTTTAAGGAAACAAATCAATTCTGTTATTCGTTGTGCTCTAAATGCAAATATCAATTCCGAAGAGGACGGTGAAGAAATCCATTTGCAAAAAACTGTCCTAAGCAAGTTCTTAGAAAGATAG
Predicted protein sequences of Glyma13g44340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g44340.1 sequence type=predicted peptide gene model=Glyma13g44340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MHMHWLGPDVPVFDPNFTYNHHRPYLYDDDLFPNDAVSARRHDAVSAHHHDGTSPLPLGMDWSPPPRLWEGRSTVWPRHPPTGWSFCVTLPSWVTAPQSPPSDPVAFFRVQVGVQSPQAITTSRLLLRRFSDFVNLFSQLKKEFPIKDLPTPPPKKILRIKSHTVLEERRLLLADWMEKLLSDVDVSRSAPVAIFLELEAAARSSFHDVNEHVSDEASANATTPSQMIQDTSPGSVKAHGSSAAIVPGNDEVSELGTPQHGMDNRSDQIMDNSTLEHGLINPTETDVHYATSSENFVYKDNITDKVTGYTADAIALHLDGTEFTPAVRDYNLNAHVKRLSTESIRSDLSSLRNTETSNLTTTTLVQDASHNLAGSHEVSRNSDLFLTFPLDERHKLNKILNTQKQRLVTAKADVEDLIARLNQEMAARQYLVTKVKDLEVELETTRLNCRENMQQAVLTEKERFTQMQWDMEELRRKCLETEMKLKLEEDERLLAESTKESVIQEKQMLQQELDVAREQFKHLQKHHDEFEMKSKTDLKVLIKEVKSLRNSELELKQQLSELMKEKLDLERILQKEKQRMENSHNANTKLLHECAILQKRLRECSVNFLVEEEDKLNIDTLPSDALDLLATSDNRIGLLLAEAQLLAQDVEDTVVAVEETRDITTDNTGKTHDELRKMLAHMFVDNASLRKQINSVIRCALNANINSEEDGEEIHLQKTVLSKFLER*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
